YOGY Home YOGY Help

Search term: YLR276C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name DBP9
SGD link S000004266
Alternative ID YLR276C
Description ATP-dependent RNA helicase of the DEAD-box family involved in biogenesis of the 60S ribosomal subunit
Synonyms YLR276C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0346 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA helicase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g34910 GI:15236218
Caenorhabditis elegans (Cel) CE27728
(WBGene00016073)		 GI:17532039
Drosophila melanogaster (Dme) 7295505 GI:17647509
Homo sapiens (Hsa) Hs9506931
(DDX56)		 GI:9506931 Q9NY93
Saccharomyces cerevisiae (Sce) YLR276c
(S000004266)		 GI:6323306 Q06218
Schizosaccharomyces pombe (Spo) SPCC1494.06c GI:19076031 O60080
Arabidopsis thaliana (Ath) At4g34910 GI:15236218
Caenorhabditis elegans (Cel) CE27728
(WBGene00016073)		 GI:17532039
Drosophila melanogaster (Dme) 7295505 GI:17647509
Homo sapiens (Hsa) Hs9506931
(DDX56)		 GI:9506931 Q9NY93
Saccharomyces cerevisiae (Sce) YLR276c
(S000004266)		 GI:6323306 Q06218
Schizosaccharomyces pombe (Spo) SPCC1494.06c GI:19076031 O60080
Arabidopsis thaliana (Ath) At4g34910 GI:15236218
Caenorhabditis elegans (Cel) CE27728
(WBGene00016073)		 GI:17532039
Drosophila melanogaster (Dme) 7295505 GI:17647509
Homo sapiens (Hsa) Hs9506931
(DDX56)		 GI:9506931 Q9NY93
Saccharomyces cerevisiae (Sce) YLR276c
(S000004266)		 GI:6323306 Q06218
Schizosaccharomyces pombe (Spo) SPCC1494.06c GI:19076031 O60080


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt4g34910
GO:0005730 nucleolus C
IDA
HsaDDX56
SpoSPCC1494.06c
ISS
SpoSPCC1494.06c
TAS
SceS000004266
GO:0005829 cytosol C
IDA
SpoSPCC1494.06c
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPCC1494.06c
TAS
HsaDDX56
SceS000004266
GO:0005515 protein binding F
IPI
HsaDDX56
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt4g34910
GO:0042802 identical protein binding F
IPI
HsaDDX56
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000004266
GO:0002119 nematode larval development P
IMP
CelWBGene00016073
GO:0006364 rRNA processing P
IMP
SceS000004266
IPI
SceS000004266
ISS
SpoSPCC1494.06c
TAS
SceS000004266
GO:0040007 growth P
IMP
CelWBGene00016073

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6498

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DDX56 GI:9506931 Q9NY93
Pan troglodytes (Ptr) DDX56 GI:114613145
Canis familiaris (Cfa) DDX56 GI:74009730
Mus musculus (Mmu) Ddx56
(MGI:1277172)		 GI:21312650 Q5SVX3
Rattus norvegicus (Rno) Ddx56
(RGD:1303195)		 GI:51948394
Drosophila melanogaster (Dme) Hlc
(FBgn0001565)		 GI:24643725
Anopheles gambiae (Aga) AgaP_AGAP011147 GI:158287479
Anopheles gambiae (Aga) AgaP_AGAP011145 GI:158287483
Caenorhabditis elegans (Cel) helicase GI:25148203
Schizosaccharomyces pombe (Spo) SPCC1494.06c GI:19076031 O60080
Saccharomyces cerevisiae (Sce) DBP9
(S000004266)		 GI:6323306 Q06218
Kluyveromyces lactis (Kla) KLLA0C04576g GI:50304895
Eremothecium gossypii (Ego) AGOS_AGR278C GI:45201374
Magnaporthe grisea (Mgr) MGG_04993 GI:39940494
Neurospora crassa (Ncr) NCU07070.1 GI:32413753
Arabidopsis thaliana (Ath) AT4G34910 GI:15236218
Oryza sativa (Osa) Os03g0728800 GI:115455097
Plasmodium falciparum (Pfa) PFL2010c GI:124806710


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt4g34910
PfaPFL2010c
GO:0005730 nucleolus C
IDA
HsaDDX56
MmuMGI:1277172
SpoSPCC1494.06c
ISS
SpoSPCC1494.06c
TAS
SceS000004266
GO:0005829 cytosol C
IDA
SpoSPCC1494.06c
GO:0003674 molecular_function F
ND
MmuMGI:1277172
GO:0004004 ATP-dependent RNA helicase activity F
ISS
DmeFBgn0001565
PfaPFL2010c
SpoSPCC1494.06c
TAS
HsaDDX56
SceS000004266
GO:0005515 protein binding F
IPI
HsaDDX56
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt4g34910
GO:0042802 identical protein binding F
IPI
HsaDDX56
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000004266
GO:0006364 rRNA processing P
IMP
SceS000004266
IPI
SceS000004266
ISS
SpoSPCC1494.06c
TAS
SceS000004266
GO:0008150 biological_process P
ND
MmuMGI:1277172
GO:0016070 RNA metabolic process P
ISS
PfaPFL2010c

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2009

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga8173 ENSANGP00000021948
Anopheles gambiae (Aga) aga8174 ENSANGP00000026912
Anopheles gambiae (Aga) aga8175 ENSANGP00000027746
Ashbya gossypii (Ago) ago4589 AGR278C
Arabidopsis thaliana (Ath) ath21637 At4g34910.1
Caenorhabditis elegans (Cel) cel2609 C24H12.4a
(CE27728;
WBGene00016073)
Candida glabrata (Cgl) cgl1446 CAGL0F04983g
Cryptococcus neoformans (Cne) cne1766 164.m02159
Dictyostelium discoideum (Ddi) ddi5698 DDB0205182
Debaryomyces hansenii (Dha) dha4975 DEHA0F13321g
Drosophila melanogaster (Dme) dme18907 CG1666-PA
(FBgn0001565)
Danio rerio (Dre) dre1350 ENSDARP00000004966
Danio rerio (Dre) dre1349 ENSDARP00000035846
(ddx56)		 Q6DRE7
Takifugu rubripes (Fru) fru4604 SINFRUP00000160753
Homo sapiens (Hsa) hsa28552 ENSP00000258772
(DDX56)		 Q9NY93
Kluyveromyces lactis (Kla) kla1402 KLLA0C04576g
Mus musculus (Mmu) mmu3236 ENSMUSP00000004507
(MGI:1277172)		 Q9D0R4
Neurospora crassa (Ncr) ncr6880 NCU07070.2
Oryza sativa (Osa) osa59649 6358.m00123
Oryza sativa (Osa) osa86823 9216.m00124
Oryza sativa (Osa) osa87233 9547.m00138
Plasmodium falciparum (Pfa) pfa5183 PFL2010c
Rattus norvegicus (Rno) rno10708 ENSRNOP00000006642
(RGD:1303195)
Saccharomyces cerevisiae (Sce) sce4382 YLR276C
(S000004266)
Schizosaccharomyces pombe (Spo) spo4866 SPCC1494.06c O60080
Yarrowia lipolytica (Yli) yli6640 YALI0F31493g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt4g34910
PfaPFL2010c
GO:0005730 nucleolus C
IDA
MmuMGI:1277172
SpoSPCC1494.06c
ISS
SpoSPCC1494.06c
TAS
SceS000004266
GO:0005829 cytosol C
IDA
SpoSPCC1494.06c
GO:0003674 molecular_function F
ND
MmuMGI:1277172
GO:0004004 ATP-dependent RNA helicase activity F
ISS
DmeFBgn0001565
PfaPFL2010c
SpoSPCC1494.06c
TAS
SceS000004266
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt4g34910
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000004266
GO:0002119 nematode larval development P
IMP
CelWBGene00016073
GO:0006364 rRNA processing P
IMP
SceS000004266
IPI
SceS000004266
ISS
SpoSPCC1494.06c
TAS
SceS000004266
GO:0008150 biological_process P
ND
MmuMGI:1277172
GO:0016070 RNA metabolic process P
ISS
PfaPFL2010c
GO:0040007 growth P
IMP
CelWBGene00016073

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC1494.06c
(O60080)		 YLR276C
(S000004266)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
SpoSPCC1494.06c
ISS
SpoSPCC1494.06c
TAS
SceS000004266
GO:0005829 cytosol C
IDA
SpoSPCC1494.06c
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPCC1494.06c
TAS
SceS000004266
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000004266
GO:0006364 rRNA processing P
IMP
SceS000004266
IPI
SceS000004266
ISS
SpoSPCC1494.06c
TAS
SceS000004266

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk