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Search term: YLR277C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name YSH1
SGD link S000004267
Alternative ID YLR277C
Description Putative endoribonuclease, subunit of the mRNA cleavage and polyadenylation specificity complex; required for 3' processing, splicing, and transcriptional termination of mRNAs and snoRNAs
Synonyms YLR277C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1137 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g61010 GI:15219848
Arabidopsis thaliana (Ath) At5g63420 GI:15242755
Caenorhabditis elegans (Cel) CE28423 GI:17543978
Drosophila melanogaster (Dme) 7300421 GI:7300421
Homo sapiens (Hsa) Hs7706427
(CPSF3)		 GI:7706427 Q9UKF6
Saccharomyces cerevisiae (Sce) YLR277c
(S000004267)		 GI:6323307 Q06224
Schizosaccharomyces pombe (Spo) SPAC17G6.16c GI:19115175 O13794
Encephalitozoon cuniculi (Ecu) ECU10g0900 GI:19074699 Q8SUE4
Arabidopsis thaliana (Ath) At1g61010 GI:15219848
Arabidopsis thaliana (Ath) At5g63420 GI:15242755
Caenorhabditis elegans (Cel) CE28423 GI:17543978
Drosophila melanogaster (Dme) 7300421 GI:7300421
Homo sapiens (Hsa) Hs7706427
(CPSF3)		 GI:7706427 Q9UKF6
Saccharomyces cerevisiae (Sce) YLR277c
(S000004267)		 GI:6323307 Q06224
Schizosaccharomyces pombe (Spo) SPAC17G6.16c GI:19115175 O13794
Encephalitozoon cuniculi (Ecu) ECU10g0900 GI:19074699 Q8SUE4


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt1g61010
SpoSPAC17G6.16c
GO:0005654 nucleoplasm C
TAS
HsaCPSF3
GO:0005829 cytosol C
IDA
SpoSPAC17G6.16c
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPAC17G6.16c
IPI
SceS000004267
ISS
AthAt1g61010
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000004267
GO:0009507 chloroplast C
IDA
AthAt5g63420
GO:0003723 RNA binding F
IC
SceS000004267
ISS
HsaCPSF3
GO:0003824 catalytic activity F
ISS
AthAt5g63420
GO:0004521 endoribonuclease activity F
IMP
SceS000004267
ISS
HsaCPSF3
SceS000004267
SpoSPAC17G6.16c
GO:0005515 protein binding F
IPI
AthAt1g61010
HsaCPSF3
GO:0008409 5'-3' exonuclease activity F
ISS
HsaCPSF3
GO:0006369 termination of RNA polymerase II
transcription		 P
IMP
SceS000004267
GO:0006378 mRNA polyadenylation P
IC
SpoSPAC17G6.16c
IMP
SceS000004267
ISS
AthAt1g61010
TAS
HsaCPSF3
GO:0006379 mRNA cleavage P
IC
SpoSPAC17G6.16c
IMP
SceS000004267
TAS
HsaCPSF3
GO:0006398 histone mRNA 3'-end processing P
IDA
HsaCPSF3
GO:0008152 metabolic process P
ISS
AthAt5g63420
GO:0008380 RNA splicing P
EXP
HsaCPSF3
IMP
SceS000004267
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt5g63420
GO:0031126 snoRNA 3'-end processing P
IMP
SceS000004267
GO:0034247 snoRNA splicing P
IMP
SceS000004267

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6499

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) CPSF3 GI:7706427 Q9UKF6
Pan troglodytes (Ptr) CPSF3 GI:114576008
Canis familiaris (Cfa) CPSF3 GI:73979708
Mus musculus (Mmu) Cpsf3
(MGI:1859328)		 GI:31980904 Q3TC91
Rattus norvegicus (Rno) Cpsf3
(RGD:1305767)		 GI:71795627
Gallus gallus (Gga) CPSF3 GI:118088995
Drosophila melanogaster (Dme) CG7698
(FBgn0038636)		 GI:24648013
Anopheles gambiae (Aga) AgaP_AGAP001224 GI:158302375
Caenorhabditis elegans (Cel) cpsf-3
(CE32993;
WBGene00013460)		 GI:32566029
Schizosaccharomyces pombe (Spo) ysh1
(SPAC17G6.16c)		 GI:19115175 O13794
Saccharomyces cerevisiae (Sce) YSH1
(S000004267)		 GI:6323307 Q06224
Kluyveromyces lactis (Kla) KLLA0C04598g GI:50304897
Eremothecium gossypii (Ego) AGOS_AGR279C GI:45201375
Magnaporthe grisea (Mgr) MGG_01804 GI:145613207
Neurospora crassa (Ncr) NCU03479.1 GI:32404248
Arabidopsis thaliana (Ath) CPSF73-I GI:30696512
Oryza sativa (Osa) Os03g0852900 GI:115456655
Plasmodium falciparum (Pfa) PF14_0364 GI:124809291


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthCPSF73-I
SpoSPAC17G6.16c
GO:0005654 nucleoplasm C
TAS
HsaCPSF3
GO:0005829 cytosol C
IDA
SpoSPAC17G6.16c
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPAC17G6.16c
IPI
SceS000004267
ISO
MmuMGI:1859328
ISS
AthCPSF73-I
PfaPF14_0364
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000004267
GO:0003723 RNA binding F
IC
SceS000004267
IDA
MmuMGI:1859328
ISS
HsaCPSF3
GO:0003729 mRNA binding F
ISO
MmuMGI:1859328
GO:0004521 endoribonuclease activity F
IDA
MmuMGI:1859328
IMP
SceS000004267
ISS
HsaCPSF3
SceS000004267
SpoSPAC17G6.16c
GO:0005515 protein binding F
IPI
AthCPSF73-I
HsaCPSF3
GO:0008409 5'-3' exonuclease activity F
IDA
MmuMGI:1859328
ISS
HsaCPSF3
GO:0002119 nematode larval development P
IMP
CelWBGene00013460
GO:0006369 termination of RNA polymerase II
transcription		 P
IMP
SceS000004267
GO:0006378 mRNA polyadenylation P
IC
SpoSPAC17G6.16c
IMP
SceS000004267
ISO
MmuMGI:1859328
ISS
AthCPSF73-I
PfaPF14_0364
TAS
HsaCPSF3
GO:0006379 mRNA cleavage P
IC
SpoSPAC17G6.16c
IMP
SceS000004267
ISS
PfaPF14_0364
TAS
HsaCPSF3
GO:0006398 histone mRNA 3'-end processing P
IDA
HsaCPSF3
MmuMGI:1859328
GO:0008380 RNA splicing P
EXP
HsaCPSF3
IMP
SceS000004267
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00013460
GO:0031126 snoRNA 3'-end processing P
IMP
SceS000004267
GO:0034247 snoRNA splicing P
IMP
SceS000004267
GO:0040007 growth P
IMP
CelWBGene00013460

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1364

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga3298 ENSANGP00000013989
Ashbya gossypii (Ago) ago4590 AGR279C
Arabidopsis thaliana (Ath) ath5283 At1g61010.1
Arabidopsis thaliana (Ath) ath5284 At1g61010.2
Caenorhabditis elegans (Cel) cel20384 Y67H2A.1
(CE32993;
WBGene00013460)
Candida glabrata (Cgl) cgl1447 CAGL0F05005g
Dictyostelium discoideum (Ddi) ddi3116 DDB0217481
Debaryomyces hansenii (Dha) dha4493 DEHA0F02398g
Drosophila melanogaster (Dme) dme13271 CG7698-PA
(FBgn0038636)
Danio rerio (Dre) dre12635 ENSDARP00000040291
(cpsf3)		 Q5U3T4
Encephalitozoon cuniculi (Ecu) ecu615 19074699
Takifugu rubripes (Fru) fru9986 SINFRUP00000133946
Takifugu rubripes (Fru) fru23027 SINFRUP00000134458
Gallus gallus (Gga) gga15954 ENSGALP00000026443
(CPSF3)
Homo sapiens (Hsa) hsa17445 ENSP00000238112
(CPSF3)		 Q9UKF6
Kluyveromyces lactis (Kla) kla1403 KLLA0C04598g
Mus musculus (Mmu) mmu30560 ENSMUSP00000068148
(MGI:1859328)		 Q3TC91
Neurospora crassa (Ncr) ncr3371 NCU03479.2
Oryza sativa (Osa) osa54095 6301.m00204
Oryza sativa (Osa) osa64261 6703.m00180
Plasmodium falciparum (Pfa) pfa1815 PF14_0364
Rattus norvegicus (Rno) rno24925 ENSRNOP00000009652
(RGD:1305767)		 Q499P4
Saccharomyces cerevisiae (Sce) sce4383 YLR277C
(S000004267)
Schizosaccharomyces pombe (Spo) spo3609 SPAC17G6.16c O13794
Yarrowia lipolytica (Yli) yli5501 YALI0F03817g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt1g61010
SpoSPAC17G6.16c
GO:0005829 cytosol C
IDA
SpoSPAC17G6.16c
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPAC17G6.16c
IPI
SceS000004267
ISO
MmuMGI:1859328
ISS
AthAt1g61010
PfaPF14_0364
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000004267
GO:0003723 RNA binding F
IC
SceS000004267
IDA
MmuMGI:1859328
GO:0003729 mRNA binding F
ISO
MmuMGI:1859328
GO:0004521 endoribonuclease activity F
IDA
MmuMGI:1859328
IMP
SceS000004267
ISS
SceS000004267
SpoSPAC17G6.16c
GO:0005515 protein binding F
IPI
AthAt1g61010
GO:0008409 5'-3' exonuclease activity F
IDA
MmuMGI:1859328
GO:0002119 nematode larval development P
IMP
CelWBGene00013460
GO:0006369 termination of RNA polymerase II
transcription		 P
IMP
SceS000004267
GO:0006378 mRNA polyadenylation P
IC
SpoSPAC17G6.16c
IMP
SceS000004267
ISO
MmuMGI:1859328
ISS
AthAt1g61010
PfaPF14_0364
GO:0006379 mRNA cleavage P
IC
SpoSPAC17G6.16c
IMP
SceS000004267
ISS
PfaPF14_0364
GO:0006398 histone mRNA 3'-end processing P
IDA
MmuMGI:1859328
GO:0008380 RNA splicing P
IMP
SceS000004267
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00013460
GO:0031126 snoRNA 3'-end processing P
IMP
SceS000004267
GO:0034247 snoRNA splicing P
IMP
SceS000004267
GO:0040007 growth P
IMP
CelWBGene00013460

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC17G6.16c
(O13794)		 YLR277C
(S000004267)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC17G6.16c
GO:0005829 cytosol C
IDA
SpoSPAC17G6.16c
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPAC17G6.16c
IPI
SceS000004267
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000004267
GO:0003723 RNA binding F
IC
SceS000004267
GO:0004521 endoribonuclease activity F
IMP
SceS000004267
ISS
SceS000004267
SpoSPAC17G6.16c
GO:0006369 termination of RNA polymerase II
transcription		 P
IMP
SceS000004267
GO:0006378 mRNA polyadenylation P
IC
SpoSPAC17G6.16c
IMP
SceS000004267
GO:0006379 mRNA cleavage P
IC
SpoSPAC17G6.16c
IMP
SceS000004267
GO:0008380 RNA splicing P
IMP
SceS000004267
GO:0031126 snoRNA 3'-end processing P
IMP
SceS000004267
GO:0034247 snoRNA splicing P
IMP
SceS000004267

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Search for gene by ID or name:

Query species:

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Search for GO info:  

GO info in one table:

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