YOGY Home YOGY Help

Search term: YLR323C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CWC24
SGD link S000004315
Alternative ID YLR323C
Description Essential protein, component of a complex containing Cef1p; has similarity to S. pombe Cwf24p
Synonyms YLR323C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1813 ACDHYPE

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Predicted E3 ubiquitin ligase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g01350_1 GI:15223384
Arabidopsis thaliana (Ath) At4g01020_3 GI:7486358
Arabidopsis thaliana (Ath) At5g06420 GI:15240037
Caenorhabditis elegans (Cel) CE26718
(WBGene00010476)		 GI:17553966 O17917
Drosophila melanogaster (Dme) 7300590 GI:18487725
Homo sapiens (Hsa) Hs5902158
(RNF113A)		 GI:5902158 O15541
Saccharomyces cerevisiae (Sce) YLR323c
(S000004315)		 GI:6323355 P53769
Schizosaccharomyces pombe (Spo) SPBC13E7.02_1 GI:19113049 Q9P6R8
Encephalitozoon cuniculi (Ecu) ECU06g1060 GI:19074356 Q8SV98


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004315
SpoSPBC13E7.02
GO:0005681 spliceosomal complex C
IDA
SpoSPBC13E7.02
GO:0005684 U2-type spliceosomal complex C
IDA
SceS000004315
GO:0016020 membrane C
IDA
AthAt5g06420
GO:0003674 molecular_function F
ND
SceS000004315
GO:0003676 nucleic acid binding F
ISS
AthAt5g06420
At4g01020
At1g01350
GO:0004386 helicase activity F
ISS
AthAt4g01020
GO:0004842 ubiquitin-protein ligase activity F
ISS
SpoSPBC13E7.02
GO:0005524 ATP binding F
ISS
AthAt4g01020
GO:0008080 N-acetyltransferase activity F
ISS
SpoSPBC13E7.02
GO:0008270 zinc ion binding F
ISS
AthAt5g06420
SpoSPBC13E7.02
GO:0000398 nuclear mRNA splicing, via spliceosome P
TAS
SpoSPBC13E7.02
GO:0002119 nematode larval development P
IMP
CelWBGene00010476
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010476
GO:0016074 snoRNA metabolic process P
NAS
SpoSPBC13E7.02
GO:0016567 protein ubiquitination P
ISS
SpoSPBC13E7.02
GO:0034247 snoRNA splicing P
IMP
SceS000004315
GO:0040007 growth P
IMP
CelWBGene00010476

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
5071

Species Gene ID NCBI link UniProt link
Mus musculus (Mmu) Rnf113a1
(MGI:1917192)		 GI:23943840 Q3UJW4
Rattus norvegicus (Rno) Rnf113a1 GI:62339353
Gallus gallus (Gga) RNF113A GI:52138685
Drosophila melanogaster (Dme) CG4973
(FBgn0038772)		 GI:21356215
Anopheles gambiae (Aga) AgaP_AGAP007068 GI:158286347
Caenorhabditis elegans (Cel) rnf-113 GI:17553966 O17917
Schizosaccharomyces pombe (Spo) cwf24
(SPBC13E7.02)		 GI:19113049 Q9P6R8
Saccharomyces cerevisiae (Sce) CWC24
(S000004315)		 GI:6323355 P53769
Kluyveromyces lactis (Kla) KLLA0C18260g GI:50306103
Eremothecium gossypii (Ego) AGOS_AFR499C GI:45199017
Magnaporthe grisea (Mgr) MGG_02960 GI:39970987
Neurospora crassa (Ncr) NCU01954.1 GI:32417332
Arabidopsis thaliana (Ath) AT5G06420 GI:30681442
Arabidopsis thaliana (Ath) AT1G01350 GI:186478011
Oryza sativa (Osa) Os02g0301000 GI:115445681


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1917192
GO:0005634 nucleus C
IDA
SceS000004315
SpoSPBC13E7.02
GO:0005681 spliceosomal complex C
IDA
SpoSPBC13E7.02
GO:0005684 U2-type spliceosomal complex C
IDA
SceS000004315
GO:0016020 membrane C
IDA
AthAt5g06420
GO:0003674 molecular_function F
ND
MmuMGI:1917192
SceS000004315
GO:0003676 nucleic acid binding F
ISS
AthAt5g06420
At1g01350
GO:0004842 ubiquitin-protein ligase activity F
ISS
SpoSPBC13E7.02
GO:0008080 N-acetyltransferase activity F
ISS
SpoSPBC13E7.02
GO:0008270 zinc ion binding F
ISS
AthAt5g06420
SpoSPBC13E7.02
GO:0000398 nuclear mRNA splicing, via spliceosome P
TAS
SpoSPBC13E7.02
GO:0008150 biological_process P
ND
MmuMGI:1917192
GO:0016074 snoRNA metabolic process P
NAS
SpoSPBC13E7.02
GO:0016567 protein ubiquitination P
ISS
SpoSPBC13E7.02
GO:0034247 snoRNA splicing P
IMP
SceS000004315

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2286

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga2520 ENSANGP00000021479
Ashbya gossypii (Ago) ago3691 AFR499C
Arabidopsis thaliana (Ath) ath41 At1g01350.1
Arabidopsis thaliana (Ath) ath22837 At5g06420.1
Arabidopsis thaliana (Ath) ath22838 At5g06420.2
Caenorhabditis elegans (Cel) cel11586 K01G5.1
(CE26718;
WBGene00010476)
Candida glabrata (Cgl) cgl36 CAGL0A00935g
Cryptococcus neoformans (Cne) cne339 162.m02934
Dictyostelium discoideum (Ddi) ddi305 DDB0189602
Debaryomyces hansenii (Dha) dha314 DEHA0A07084g
Drosophila melanogaster (Dme) dme13466 CG4973-PA
(FBgn0038772)
Danio rerio (Dre) dre17570 ENSDARP00000029319
Encephalitozoon cuniculi (Ecu) ecu1583 19074356
Takifugu rubripes (Fru) fru24144 SINFRUP00000161592
Gallus gallus (Gga) gga13723 ENSGALP00000000742
(RNF113A)		 Q67ER3
Homo sapiens (Hsa) hsa33315 ENSP00000245419
Homo sapiens (Hsa) hsa8957 ENSP00000267291
(RNF113B)		 Q8IZP6
Kluyveromyces lactis (Kla) kla2012 KLLA0C18260g
Mus musculus (Mmu) mmu28844 ENSMUSP00000042569
(MGI:1917192)		 Q3UJW4
Neurospora crassa (Ncr) ncr1901 NCU01954.2
Oryza sativa (Osa) osa46162 5519.m00192
Plasmodium falciparum (Pfa) pfa1867 PF14_0416
Rattus norvegicus (Rno) rno30699 ENSRNOP00000047839
(RGD:1359693)		 Q5PPN1
Saccharomyces cerevisiae (Sce) sce4436 YLR323C
(S000004315)
Schizosaccharomyces pombe (Spo) spo2385 SPBC13E7.02 Q9P6R8
Yarrowia lipolytica (Yli) yli2619 YALI0C22484g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1917192
GO:0005634 nucleus C
IDA
SceS000004315
SpoSPBC13E7.02
GO:0005681 spliceosomal complex C
IDA
SpoSPBC13E7.02
GO:0005684 U2-type spliceosomal complex C
IDA
SceS000004315
GO:0016020 membrane C
IDA
AthAt5g06420
GO:0003674 molecular_function F
ND
MmuMGI:1917192
SceS000004315
GO:0003676 nucleic acid binding F
ISS
AthAt5g06420
At1g01350
GO:0004842 ubiquitin-protein ligase activity F
ISS
SpoSPBC13E7.02
GO:0008080 N-acetyltransferase activity F
ISS
SpoSPBC13E7.02
GO:0008270 zinc ion binding F
ISS
AthAt5g06420
SpoSPBC13E7.02
GO:0000398 nuclear mRNA splicing, via spliceosome P
TAS
SpoSPBC13E7.02
GO:0002119 nematode larval development P
IMP
CelWBGene00010476
GO:0008150 biological_process P
ND
MmuMGI:1917192
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010476
GO:0016074 snoRNA metabolic process P
NAS
SpoSPBC13E7.02
GO:0016567 protein ubiquitination P
ISS
SpoSPBC13E7.02
GO:0034247 snoRNA splicing P
IMP
SceS000004315
GO:0040007 growth P
IMP
CelWBGene00010476

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC13E7.02
(Q9P6R8)		 YLR323C
(S000004315)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004315
SpoSPBC13E7.02
GO:0005681 spliceosomal complex C
IDA
SpoSPBC13E7.02
GO:0005684 U2-type spliceosomal complex C
IDA
SceS000004315
GO:0003674 molecular_function F
ND
SceS000004315
GO:0004842 ubiquitin-protein ligase activity F
ISS
SpoSPBC13E7.02
GO:0008080 N-acetyltransferase activity F
ISS
SpoSPBC13E7.02
GO:0008270 zinc ion binding F
ISS
SpoSPBC13E7.02
GO:0000398 nuclear mRNA splicing, via spliceosome P
TAS
SpoSPBC13E7.02
GO:0016074 snoRNA metabolic process P
NAS
SpoSPBC13E7.02
GO:0016567 protein ubiquitination P
ISS
SpoSPBC13E7.02
GO:0034247 snoRNA splicing P
IMP
SceS000004315

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk