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Search term: YLR325C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPL38
SGD link S000004317
Alternative ID YLR325C
Description Protein component of the large (60S) ribosomal subunit, has similarity to rat L38 ribosomal protein
Synonyms YLR325C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3499 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING 60S ribosomal protein L38

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g43460 GI:15224284
Arabidopsis thaliana (Ath) At3g59540 GI:15224284
Caenorhabditis elegans (Cel) CE20485
(WBGene00004452)		 GI:17563238 O17570
Drosophila melanogaster (Dme) 7289476 GI:7289476
Homo sapiens (Hsa) Hs4506645
(RPL38)		 GI:4506645 P63173
Saccharomyces cerevisiae (Sce) YLR325c
(S000004317)		 GI:6323357 P49167
Schizosaccharomyces pombe (Spo) SPAC30D11.12 GI:19114117 Q09900
Schizosaccharomyces pombe (Spo) SPBC577.02 GI:19112092 Q9USR7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005829 cytosol C
EXP
HsaRPL38
IDA
SpoSPBC577.02
SPAC30D11.12
GO:0005840 ribosome C
ISS
AthAt3g59540
At2g43460
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt3g59540
At2g43460
ISS
SpoSPAC30D11.12
SPBC577.02
TAS
HsaRPL38
SceS000004317
GO:0022626 cytosolic ribosome C
IDA
AthAt2g43460
GO:0003723 RNA binding F
TAS
HsaRPL38
GO:0003735 structural constituent of ribosome F
ISS
AthAt3g59540
At2g43460
SpoSPAC30D11.12
SPBC577.02
TAS
SceS000004317
GO:0005515 protein binding F
IPI
HsaRPL38
GO:0000003 reproduction P
IMP
CelWBGene00004452
GO:0002119 nematode larval development P
IMP
CelWBGene00004452
GO:0006412 translation P
ISS
AthAt3g59540
At2g43460
SpoSPBC577.02
SPAC30D11.12
TAS
HsaRPL38
SceS000004317
GO:0006414 translational elongation P
EXP
HsaRPL38
GO:0040007 growth P
IMP
CelWBGene00004452
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004452
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004452
GO:0042254 ribosome biogenesis P
ISS
AthAt3g59540
At2g43460
GO:0042255 ribosome assembly P
RCA
SceS000004317

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39771

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RPL38
(S000004317)		 GI:6323357 P49167
Kluyveromyces lactis (Kla) KLLA0C18216g GI:50306099
Eremothecium gossypii (Ego) AGOS_AFR501C GI:45199019


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0022625 cytosolic large ribosomal subunit C
TAS
SceS000004317
GO:0003735 structural constituent of ribosome F
TAS
SceS000004317
GO:0006412 translation P
TAS
SceS000004317
GO:0042255 ribosome assembly P
RCA
SceS000004317

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1460

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga12460 ENSANGP00000012582
Ashbya gossypii (Ago) ago3693 AFR501C
Arabidopsis thaliana (Ath) ath11539 At2g43460.1
Arabidopsis thaliana (Ath) ath17374 At3g59540.1
Caenorhabditis elegans (Cel) cel1267 C06B8.8
(CE20485;
WBGene00004452)
Candida glabrata (Cgl) cgl38 CAGL0A00979g
Dictyostelium discoideum (Ddi) ddi11389 DDB0231155
Debaryomyces hansenii (Dha) dha320 DEHA0A07216g
Drosophila melanogaster (Dme) dme15655 CG18001-PA
Danio rerio (Dre) dre8090 ENSDARP00000005837
Gallus gallus (Gga) gga24843 ENSGALP00000002218
(RPL38)
Homo sapiens (Hsa) hsa14269 ENSP00000309830
(RPL38)		 P63173
Kluyveromyces lactis (Kla) kla2010 KLLA0C18216g
Mus musculus (Mmu) mmu22984 ENSMUSP00000072103
Mus musculus (Mmu) mmu19185 ENSMUSP00000076054
Mus musculus (Mmu) mmu21886 ENSMUSP00000079241
Mus musculus (Mmu) mmu5094 ENSMUSP00000080741
(MGI:1914921)		 Q9JJI8
Neurospora crassa (Ncr) ncr3526 NCU03635.2
Oryza sativa (Osa) osa20104 3515.m00183
Oryza sativa (Osa) osa49140 5726.m00118
Plasmodium falciparum (Pfa) pfa763 PF11_0312
Rattus norvegicus (Rno) rno6374 ENSRNOP00000030902
(RGD:1305573)		 P63174
Rattus norvegicus (Rno) rno16671 ENSRNOP00000042022
(RGD:1305573)		 P63174
Rattus norvegicus (Rno) rno20314 ENSRNOP00000042288
(RGD:1305573)		 P63174
Rattus norvegicus (Rno) rno12092 ENSRNOP00000046127
(RGD:1305573)		 P63174
Rattus norvegicus (Rno) rno31769 ENSRNOP00000049028
(GI:680353)
Rattus norvegicus (Rno) rno28721 ENSRNOP00000050202
(RGD:1305573)		 P63174
Rattus norvegicus (Rno) rno10824 ENSRNOP00000050353
(RGD:1305573)		 P63174
Saccharomyces cerevisiae (Sce) sce4438 YLR325C
(S000004317)
Schizosaccharomyces pombe (Spo) spo3719 SPAC30D11.12 Q09900
Schizosaccharomyces pombe (Spo) spo4619 SPBC577.02 Q9USR7
Yarrowia lipolytica (Yli) yli1203 YALI0B11308g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1914921
GO:0005829 cytosol C
IDA
SpoSPBC577.02
SPAC30D11.12
GO:0005840 ribosome C
ISS
AthAt3g59540
At2g43460
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt3g59540
At2g43460
ISS
PfaPF11_0312
SpoSPAC30D11.12
SPBC577.02
TAS
SceS000004317
GO:0022626 cytosolic ribosome C
IDA
AthAt2g43460
GO:0003674 molecular_function F
ND
MmuMGI:1914921
GO:0003735 structural constituent of ribosome F
ISS
AthAt3g59540
At2g43460
SpoSPAC30D11.12
SPBC577.02
TAS
SceS000004317
GO:0000003 reproduction P
IMP
CelWBGene00004452
GO:0002119 nematode larval development P
IMP
CelWBGene00004452
GO:0006412 translation P
ISS
AthAt3g59540
At2g43460
SpoSPBC577.02
SPAC30D11.12
TAS
SceS000004317
GO:0008150 biological_process P
ND
MmuMGI:1914921
GO:0040007 growth P
IMP
CelWBGene00004452
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004452
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004452
GO:0042254 ribosome biogenesis P
ISS
AthAt3g59540
At2g43460
GO:0042255 ribosome assembly P
RCA
SceS000004317

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC30D11.12
(Q09900)		 YLR325C
(S000004317)
SPBC577.02
(Q9USR7)		 YLR325C
(S000004317)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005829 cytosol C
IDA
SpoSPBC577.02
SPAC30D11.12
GO:0022625 cytosolic large ribosomal subunit C
ISS
SpoSPAC30D11.12
SPBC577.02
TAS
SceS000004317
GO:0003735 structural constituent of ribosome F
ISS
SpoSPAC30D11.12
SPBC577.02
TAS
SceS000004317
GO:0006412 translation P
ISS
SpoSPBC577.02
SPAC30D11.12
TAS
SceS000004317
GO:0042255 ribosome assembly P
RCA
SceS000004317

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