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Search term: YLR399C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name BDF1
SGD link S000004391
Alternative ID YLR399C
Description Protein involved in transcription initiation at TATA-containing promoters; associates with the basal transcription factor TFIID; contains two bromodomains; corresponds to the C-terminal region of mammalian TAF1; redundant with Bdf2p
Synonyms YLR399C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1474 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g06230 GI:15221424
Arabidopsis thaliana (Ath) At1g17790 GI:18394534
Arabidopsis thaliana (Ath) At1g58025 GI:15217830
Arabidopsis thaliana (Ath) At1g73150 GI:15219397
Arabidopsis thaliana (Ath) At2g34900 GI:15226857
Arabidopsis thaliana (Ath) At3g01770 GI:6016737
Arabidopsis thaliana (Ath) At3g27260 GI:15232127
Arabidopsis thaliana (Ath) At3g52280 GI:15231174
Arabidopsis thaliana (Ath) At5g10550 GI:15238195
Arabidopsis thaliana (Ath) At5g14270 GI:11358472
Arabidopsis thaliana (Ath) At5g46550 GI:15237461
Arabidopsis thaliana (Ath) At5g63330 GI:15242727
Arabidopsis thaliana (Ath) At5g65630 GI:15239091
Caenorhabditis elegans (Cel) CE05993 GI:17568249
Caenorhabditis elegans (Cel) CE18761 GI:17568247 Q20948
Caenorhabditis elegans (Cel) CE19384
(WBGene00017423)		 GI:17551634 O76561
Caenorhabditis elegans (Cel) CE25214
(WBGene00022473)		 GI:17510957
Drosophila melanogaster (Dme) 7290870 GI:7290870
Drosophila melanogaster (Dme) 7291557 GI:7291557
Drosophila melanogaster (Dme) 7301065 GI:7301065 Q9VCG6
Drosophila melanogaster (Dme) 7302505 GI:20130147
Homo sapiens (Hsa) Hs11067749
(BRD3)		 GI:11067749 Q15059
Homo sapiens (Hsa) Hs19718731
(BRD4)		 GI:19718731 Q96HN0
Homo sapiens (Hsa) Hs4502453 GI:4502453
Homo sapiens (Hsa) Hs4826806 GI:4826806 Q9UNM9
Homo sapiens (Hsa) Hs7657218 GI:7657218 Q96HN0
Saccharomyces cerevisiae (Sce) YDL070w
(S000002228)		 GI:6320132 Q07442
Saccharomyces cerevisiae (Sce) YLR399c
(S000004391)		 GI:6323431 P35817
Schizosaccharomyces pombe (Spo) SPAC631.02 GI:19114532 Q9HGP4
Encephalitozoon cuniculi (Ecu) ECU08g1640 GI:19173489 Q8SR93


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IDA
SceS000004391
ISS
SpoSPAC631.02
GO:0005575 cellular_component C
ND
AthAt1g06230
At1g58025
At5g10550
At5g65630
At3g01770
GO:0005634 nucleus C
IDA
AthAt2g34900
At3g52280
HsaBRD4
SceS000004391
SpoSPAC631.02
ISS
SpoSPAC631.02
NAS
HsaBRD3
TAS
SceS000002228
GO:0005737 cytoplasm C
IDA
HsaBRD4
GO:0009507 chloroplast C
IDA
AthAt3g27260
GO:0003674 molecular_function F
ND
HsaBRD3
SpoSPAC631.02
GO:0003677 DNA binding F
ISS
AthAt5g14270
At5g65630
At1g58025
At3g27260
At5g10550
At1g73150
At2g34900
At1g17790
At1g06230
At5g46550
At3g52280
At3g01770
GO:0004402 histone acetyltransferase activity F
IDA
AthAt3g52280
GO:0005515 protein binding F
IPI
HsaBRD3
BRD4
GO:0030528 transcription regulator activity F
IMP
SceS000004391
ISS
SceS000004391
GO:0042393 histone binding F
IDA
SceS000002228
IPI
AthAt1g73150
GO:0070577 histone acetyl-lysine binding F
IDA
SceS000002228
S000004391
GO:0000003 reproduction P
IMP
CelWBGene00022473
WBGene00017423
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00022473
GO:0002119 nematode larval development P
IMP
CelWBGene00022473
WBGene00017423
GO:0006281 DNA repair P
IMP
SceS000004391
GO:0006338 chromatin remodeling P
IDA
AthAt3g52280
IPI
SceS000004391
ISS
SpoSPAC631.02
GO:0007049 cell cycle P
IMP
AthAt1g06230
GO:0007126 meiosis P
IMP
SceS000004391
GO:0008150 biological_process P
ND
AthAt1g58025
At1g17790
At3g01770
At3g27260
HsaBRD3
SceS000002228
GO:0009294 DNA mediated transformation P
IMP
AthAt5g65630
At5g10550
At1g06230
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00022473
WBGene00017423
GO:0010030 positive regulation of seed germination P
IMP
AthAt2g34900
GO:0030437 ascospore formation P
IMP
SceS000004391
GO:0040007 growth P
IMP
CelWBGene00022473
WBGene00017423
GO:0040011 locomotion P
IMP
CelWBGene00017423
WBGene00022473
GO:0043044 ATP-dependent chromatin remodeling P
RCA
SceS000004391
GO:0048364 root development P
IMP
AthAt1g06230

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
81801

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) BRD3 GI:11067749 Q15059
Pan troglodytes (Ptr) BRD3 GI:114627439
Canis familiaris (Cfa) BRD3 GI:73967596
Mus musculus (Mmu) Brd3
(MGI:1914632)		 GI:31981064 Q05DR7
Rattus norvegicus (Rno) Brd3 GI:109467954
Gallus gallus (Gga) BRD3 GI:118099425
Drosophila melanogaster (Dme) fs(1)h
(FBgn0004656)		 GI:24640482
Anopheles gambiae (Aga) AgaP_AGAP002807 GI:118782185
Caenorhabditis elegans (Cel) tag-332
(CE25214;
WBGene00022473)		 GI:212645116
Saccharomyces cerevisiae (Sce) BDF1
(S000004391)		 GI:6323431 P35817
Kluyveromyces lactis (Kla) KLLA0B03113g GI:50303459
Eremothecium gossypii (Ego) AGOS_AER068C GI:45190674


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IDA
SceS000004391
GO:0005575 cellular_component C
ND
MmuMGI:1914632
GO:0005634 nucleus C
IDA
SceS000004391
NAS
HsaBRD3
GO:0003674 molecular_function F
ND
HsaBRD3
MmuMGI:1914632
GO:0003677 DNA binding F
NAS
DmeFBgn0004656
GO:0004672 protein kinase activity F
NAS
DmeFBgn0004656
GO:0005515 protein binding F
IPI
HsaBRD3
GO:0030528 transcription regulator activity F
IMP
SceS000004391
ISS
SceS000004391
GO:0070577 histone acetyl-lysine binding F
IDA
SceS000004391
GO:0000003 reproduction P
IMP
CelWBGene00022473
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00022473
GO:0002119 nematode larval development P
IMP
CelWBGene00022473
GO:0006281 DNA repair P
IMP
SceS000004391
GO:0006338 chromatin remodeling P
IPI
SceS000004391
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
NAS
DmeFBgn0004656
GO:0007126 meiosis P
IMP
SceS000004391
GO:0007362 terminal region determination P
IMP
DmeFBgn0004656
GO:0008150 biological_process P
ND
HsaBRD3
MmuMGI:1914632
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00022473
GO:0030437 ascospore formation P
IMP
SceS000004391
GO:0032582 negative regulation of gene-specific
transcription		 P
IMP
DmeFBgn0004656
GO:0040007 growth P
IMP
CelWBGene00022473
GO:0040011 locomotion P
IMP
CelWBGene00022473
GO:0043044 ATP-dependent chromatin remodeling P
RCA
SceS000004391

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_842

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5031 ENSANGP00000016848
Ashbya gossypii (Ago) ago2573 AER068C
Arabidopsis thaliana (Ath) ath596 At1g06230.1
Arabidopsis thaliana (Ath) ath597 At1g06230.2
Arabidopsis thaliana (Ath) ath1906 At1g17790.1
Arabidopsis thaliana (Ath) ath6607 At1g73150.1
Caenorhabditis elegans (Cel) cel17780 Y119C1B.8a
(CE25214;
WBGene00022473)
Caenorhabditis elegans (Cel) cel17781 Y119C1B.8b
(CE33207)
Candida glabrata (Cgl) cgl527 CAGL0C02541g
Debaryomyces hansenii (Dha) dha1035 DEHA0B07986g
Drosophila melanogaster (Dme) dme16924 CG2252-PA
(FBgn0004656)
Drosophila melanogaster (Dme) dme16923 CG2252-PB
(FBgn0004656)
Drosophila melanogaster (Dme) dme16925 CG2252-PC
(FBgn0004656)
Drosophila melanogaster (Dme) dme16926 CG2252-PD
(FBgn0004656)
Drosophila melanogaster (Dme) dme16927 CG2252-PE
(FBgn0004656)
Danio rerio (Dre) dre9686 ENSDARP00000000686
Danio rerio (Dre) dre31546 ENSDARP00000005852
(LOC573807)		 Q7SXL8
Danio rerio (Dre) dre20095 ENSDARP00000017041
Danio rerio (Dre) dre20096 ENSDARP00000029806
Danio rerio (Dre) dre20094 ENSDARP00000038301
Danio rerio (Dre) dre23844 ENSDARP00000038787
(brd2)		 Q8AWX9
Encephalitozoon cuniculi (Ecu) ecu320 19173489
Takifugu rubripes (Fru) fru11321 SINFRUP00000140333
Takifugu rubripes (Fru) fru14134 SINFRUP00000140567
Takifugu rubripes (Fru) fru14135 SINFRUP00000174878
Gallus gallus (Gga) gga7707 ENSGALP00000000211
(BRD2)		 A5HUL5
Gallus gallus (Gga) gga7911 ENSGALP00000004215
Gallus gallus (Gga) gga7912 ENSGALP00000004216
Gallus gallus (Gga) gga7910 ENSGALP00000004217
(BRD3)
Homo sapiens (Hsa) hsa32165 ENSP00000305918
(BRD3)		 Q15059-1
Homo sapiens (Hsa) hsa26924 ENSP00000309923
Homo sapiens (Hsa) hsa32166 ENSP00000350557
(BRD3)		 Q15059-2
Kluyveromyces lactis (Kla) kla669 KLLA0B03113g
Mus musculus (Mmu) mmu11454 ENSMUSP00000025193
(MGI:99495)		 Q7JJ13-1
Mus musculus (Mmu) mmu14301 ENSMUSP00000028282
(MGI:1914632)		 Q8K2F0-1
Mus musculus (Mmu) mmu14302 ENSMUSP00000069584
Neurospora crassa (Ncr) ncr8210 NCU08423.2
Oryza sativa (Osa) osa6209 2442.m00119
Oryza sativa (Osa) osa9868 2740.m00178
Oryza sativa (Osa) osa11360 2796.m00184
Oryza sativa (Osa) osa45215 5635.m00172
Rattus norvegicus (Rno) rno17503 ENSRNOP00000000535
(RGD:1303324)		 Q6MGA9
Rattus norvegicus (Rno) rno18290 ENSRNOP00000009033
(RGD:1308925)
Rattus norvegicus (Rno) rno18291 ENSRNOP00000010775
(RGD:1308925)
Saccharomyces cerevisiae (Sce) sce4517 YLR399C
(S000004391)
Schizosaccharomyces pombe (Spo) spo1672 SPAC631.02 Q9HGP4
Schizosaccharomyces pombe (Spo) spo4890 SPCC1450.02 Q9Y7N0
Yarrowia lipolytica (Yli) yli4709 YALI0E20537g