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Search term: YLR401C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name DUS3
SGD link S000004393
Alternative ID YLR401C
Description Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus4p; contains a consensus oleate response element (ORE) in its promoter region
Synonyms YLR401C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2333 ACDHYP-

KOGs classification KOGs description
POORLY CHARACTERIZED Uncharacterized conserved protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g38890 GI:15234862
Caenorhabditis elegans (Cel) CE19615
(WBGene00021377)		 GI:17543114 Q9TYN2
Drosophila melanogaster (Dme) 7298625 GI:7298625 Q9VIS4
Homo sapiens (Hsa) Hs22052882 GI:22052882
Saccharomyces cerevisiae (Sce) YLR401c
(S000004393)		 GI:6323433
Schizosaccharomyces pombe (Spo) SPAC16.04 GI:19115484 Q9UTH9


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004393
SpoSPAC16.04
ISS
SpoSPAC16.04
GO:0005737 cytoplasm C
IDA
SceS000004393
ISS
SpoSPAC16.04
GO:0005773 vacuole C
IDA
AthAt4g38890
GO:0017150 tRNA dihydrouridine synthase activity F
ISS
SceS000004393
SpoSPAC16.04
GO:0006400 tRNA modification P
IMP
SceS000004393
ISS
SceS000004393
SpoSPAC16.04
GO:0009451 RNA modification P
RCA
SceS000004393

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6533

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DUS3L GI:24308187
Pan troglodytes (Ptr) DUS3L GI:114674847
Canis familiaris (Cfa) DUS3L GI:73987294
Mus musculus (Mmu) Dus3l
(MGI:2147092)		 GI:21450077 A4FTV5
Rattus norvegicus (Rno) Dus3l
(RGD:1563228)		 GI:77917548
Gallus gallus (Gga) DUS3L GI:118103122
Drosophila melanogaster (Dme) CG10463
(FBgn0032819)		 GI:24585320
Anopheles gambiae (Aga) AgaP_AGAP009171 GI:158299928
Caenorhabditis elegans (Cel) Y37E11B.5
(CE19615;
WBGene00021377)		 GI:17543114 Q9TYN2
Schizosaccharomyces pombe (Spo) dus3
(SPAC16.04)		 GI:19115484 Q9UTH9
Saccharomyces cerevisiae (Sce) DUS3
(S000004393)		 GI:85666121
Kluyveromyces lactis (Kla) KLLA0B03069g GI:50303455
Eremothecium gossypii (Ego) AGOS_AER070C GI:45190676
Magnaporthe grisea (Mgr) MGG_01205 GI:39950340
Neurospora crassa (Ncr) NCU02619.1 GI:32422749
Arabidopsis thaliana (Ath) AT4G38890 GI:15234862
Oryza sativa (Osa) Os04g0117600 GI:115456906


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2147092
GO:0005634 nucleus C
IDA
SceS000004393
SpoSPAC16.04
ISS
SpoSPAC16.04
GO:0005737 cytoplasm C
IDA
SceS000004393
ISS
SpoSPAC16.04
GO:0005773 vacuole C
IDA
AthAt4g38890
GO:0003674 molecular_function F
ND
MmuMGI:2147092
GO:0017150 tRNA dihydrouridine synthase activity F
ISS
SceS000004393
SpoSPAC16.04
GO:0006400 tRNA modification P
IMP
SceS000004393
ISS
SceS000004393
SpoSPAC16.04
GO:0008150 biological_process P
ND
MmuMGI:2147092
GO:0009451 RNA modification P
RCA
SceS000004393

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1329

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga11297 ENSANGP00000016833
Ashbya gossypii (Ago) ago2575 AER070C
Arabidopsis thaliana (Ath) ath22084 At4g38890.1
Caenorhabditis elegans (Cel) cel18241 Y37E11B.5
(CE19615;
WBGene00021377)
Candida glabrata (Cgl) cgl5092 CAGL0M09977g
Cryptococcus neoformans (Cne) cne179 162.m02596
Dictyostelium discoideum (Ddi) ddi11209 DDB0184523
Debaryomyces hansenii (Dha) dha2846 DEHA0D12364g
Drosophila melanogaster (Dme) dme3047 CG10463-PA
(FBgn0032819)
Danio rerio (Dre) dre3827 ENSDARP00000025079
Escherichia coli (Eco) eco3150 16131148
Takifugu rubripes (Fru) fru2561 SINFRUP00000133965
Takifugu rubripes (Fru) fru2563 SINFRUP00000172793
Gallus gallus (Gga) gga14100 ENSGALP00000002774
Gallus gallus (Gga) gga14098 ENSGALP00000002775
Gallus gallus (Gga) gga14101 ENSGALP00000002776
Gallus gallus (Gga) gga14099 ENSGALP00000002777
(DUS3L)
Homo sapiens (Hsa) hsa15418 ENSP00000311977
(DUS3L)		 Q96G46-1
Homo sapiens (Hsa) hsa15417 ENSP00000315558
(DUS3L)		 Q96G46-3
Kluyveromyces lactis (Kla) kla667 KLLA0B03069g
Mus musculus (Mmu) mmu11961 ENSMUSP00000007747
(MGI:2147092)		 Q91XI1-1
Neurospora crassa (Ncr) ncr2537 NCU02619.2
Oryza sativa (Osa) osa46746 5532.m00161
Saccharomyces cerevisiae (Sce) sce4520 YLR401C
(S000004393)
Schizosaccharomyces pombe (Spo) spo2055 SPAC16.04 Q9UTH9
Yarrowia lipolytica (Yli) yli4933 YALI0E26048g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2147092
GO:0005634 nucleus C
IDA
SceS000004393
SpoSPAC16.04
ISS
SpoSPAC16.04
GO:0005737 cytoplasm C
IDA
SceS000004393
ISS
SpoSPAC16.04
GO:0005773 vacuole C
IDA
AthAt4g38890
GO:0003674 molecular_function F
ND
MmuMGI:2147092
GO:0017150 tRNA dihydrouridine synthase activity F
ISS
SceS000004393
SpoSPAC16.04
GO:0006400 tRNA modification P
IMP
SceS000004393
ISS
SceS000004393
SpoSPAC16.04
GO:0008150 biological_process P
ND
MmuMGI:2147092
GO:0009451 RNA modification P
RCA
SceS000004393

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC16.04
(Q9UTH9)		 YLR401C
(S000004393)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004393
SpoSPAC16.04
ISS
SpoSPAC16.04
GO:0005737 cytoplasm C
IDA
SceS000004393
ISS
SpoSPAC16.04
GO:0017150 tRNA dihydrouridine synthase activity F
ISS
SceS000004393
SpoSPAC16.04
GO:0006400 tRNA modification P
IMP
SceS000004393
ISS
SceS000004393
SpoSPAC16.04
GO:0009451 RNA modification P
RCA
SceS000004393

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