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Search term: YLR447C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name VMA6
SGD link S000004439
Alternative ID YLR447C
Description Subunit d of the five-subunit V0 integral membrane domain of vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found in the endomembrane system; stabilizes VO subunits; required for V1 domain assembly on the vacuolar membrane
Synonyms YLR447C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2957 ACDHYPE

KOGs classification KOGs description
METABOLISM Vacuolar H+-ATPase V0 sector, subunit d

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g28710 GI:15233060
Arabidopsis thaliana (Ath) At3g28715 GI:15229475
Caenorhabditis elegans (Cel) CE25796 GI:17505761
Drosophila melanogaster (Dme) 7290447
(FBgn0028665)		 GI:18543319
Drosophila melanogaster (Dme) 7300966 GI:12585514
Homo sapiens (Hsa) Hs20543874 GI:20543874
Homo sapiens (Hsa) Hs19913432
(ATP6V0D1)		 GI:19913432 P61421
Saccharomyces cerevisiae (Sce) YLR447c
(S000004439)		 GI:6323480 P32366
Schizosaccharomyces pombe (Spo) SPAC17A2.03c GI:19115149 O13753
Encephalitozoon cuniculi (Ecu) ECU08g1520 GI:19173477 Q8SR97


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000220 vacuolar proton-transporting V-type ATPase, V0
domain		 C
ISS
DmeFBgn0028665
SpoSPAC17A2.03c
NAS
DmeFBgn0028665
TAS
SceS000004439
GO:0000322 storage vacuole C
RCA
SceS000004439
GO:0000323 lytic vacuole C
RCA
SceS000004439
GO:0000324 fungal-type vacuole C
RCA
SceS000004439
GO:0000325 plant-type vacuole C
IDA
AthAt3g28710
GO:0000329 fungal-type vacuole membrane C
RCA
SceS000004439
GO:0005634 nucleus C
IDA
SpoSPAC17A2.03c
GO:0005773 vacuole C
IDA
AthAt3g28715
At3g28710
GO:0005774 vacuolar membrane C
IDA
AthAt3g28710
SceS000004439
GO:0005886 plasma membrane C
IDA
AthAt3g28710
At3g28715
DmeFBgn0028665
GO:0016020 membrane C
IDA
HsaATP6V0D1
GO:0016471 vacuolar proton-transporting V-type ATPase
complex		 C
IDA
HsaATP6V0D1
NAS
HsaATP6V0D1
GO:0005515 protein binding F
IPI
HsaATP6V0D1
GO:0005524 ATP binding F
IC
SpoSPAC17A2.03c
GO:0008553 hydrogen-exporting ATPase activity,
phosphorylative mechanism		 F
ISS
DmeFBgn0028665
NAS
DmeFBgn0028665
GO:0046961 proton-transporting ATPase activity, rotational
mechanism		 F
IDA
SceS000004439
IMP
SceS000004439
ISS
AthAt3g28715
At3g28710
SpoSPAC17A2.03c
GO:0006811 ion transport P
RCA
SceS000004439
GO:0007034 vacuolar transport P
IDA
SceS000004439
IMP
SceS000004439
GO:0007035 vacuolar acidification P
IMP
DmeFBgn0028665
ISS
SpoSPAC17A2.03c
TAS
SceS000004439
GO:0008593 regulation of Notch signaling pathway P
IMP
DmeFBgn0028665
GO:0009117 nucleotide metabolic process P
RCA
SceS000004439
GO:0015991 ATP hydrolysis coupled proton transport P
IC
SpoSPAC17A2.03c
GO:0015992 proton transport P
ISS
AthAt3g28715
At3g28710
NAS
DmeFBgn0028665
HsaATP6V0D1
GO:0050801 ion homeostasis P
RCA
SceS000004439

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
3444

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) ATP6V0D1 GI:19913432 P61421
Pan troglodytes (Ptr) ATP6V0D1 GI:114663128
Canis familiaris (Cfa) ATP6V0D1 GI:73957263
Mus musculus (Mmu) Atp6v0d1
(MGI:1201778)		 GI:31981304 P51863
Rattus norvegicus (Rno) Atp6v0d1
(RGD:1306159)		 GI:58865424
Gallus gallus (Gga) ATP6V0D1 GI:50753561
Drosophila melanogaster (Dme) VhaAC39
(FBgn0028665)		 GI:18543319
Anopheles gambiae (Aga) AgaP_AGAP000721 GI:158289559
Caenorhabditis elegans (Cel) vha-16
(CE29684;
WBGene00016258)		 GI:25144000
Schizosaccharomyces pombe (Spo) vma6
(SPAC17A2.03c)		 GI:19115149 O13753
Saccharomyces cerevisiae (Sce) VMA6
(S000004439)		 GI:6323480 P32366
Kluyveromyces lactis (Kla) KLLA0B04752g GI:50303607
Eremothecium gossypii (Ego) AGOS_AER146C GI:45190751
Magnaporthe grisea (Mgr) MGG_07007 GI:39978245
Neurospora crassa (Ncr) NCU03395.1 GI:32404080
Arabidopsis thaliana (Ath) AT3G28710 GI:15233060
Arabidopsis thaliana (Ath) AT3G28715 GI:15229475
Oryza sativa (Osa) Os01g0587000 GI:115437984
Plasmodium falciparum (Pfa) PF14_0615 GI:124810167


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000220 vacuolar proton-transporting V-type ATPase, V0
domain		 C
ISS
DmeFBgn0028665
PfaPF14_0615
SpoSPAC17A2.03c
NAS
DmeFBgn0028665
TAS
SceS000004439
GO:0000322 storage vacuole C
RCA
SceS000004439
GO:0000323 lytic vacuole C
RCA
SceS000004439
GO:0000324 fungal-type vacuole C
RCA
SceS000004439
GO:0000325 plant-type vacuole C
IDA
AthAt3g28710
GO:0000329 fungal-type vacuole membrane C
RCA
SceS000004439
GO:0005634 nucleus C
IDA
SpoSPAC17A2.03c
GO:0005769 early endosome C
IDA
MmuMGI:1201778
GO:0005773 vacuole C
IDA
AthAt3g28715
At3g28710
GO:0005774 vacuolar membrane C
IDA
AthAt3g28710
SceS000004439
GO:0005886 plasma membrane C
IDA
AthAt3g28710
At3g28715
DmeFBgn0028665
GO:0008021 synaptic vesicle C
ISO
MmuMGI:1201778
GO:0016020 membrane C
IDA
HsaATP6V0D1
GO:0016324 apical plasma membrane C
ISO
MmuMGI:1201778
GO:0016471 vacuolar proton-transporting V-type ATPase
complex		 C
IDA
HsaATP6V0D1
NAS
HsaATP6V0D1
GO:0019717 synaptosome C
ISO
MmuMGI:1201778
GO:0043234 protein complex C
ISO
MmuMGI:1201778
GO:0043679 axon terminus C
ISO
MmuMGI:1201778
GO:0005515 protein binding F
IPI
HsaATP6V0D1
GO:0005524 ATP binding F
IC
SpoSPAC17A2.03c
GO:0008553 hydrogen-exporting ATPase activity,
phosphorylative mechanism		 F
IDA
MmuMGI:1201778
ISS
DmeFBgn0028665
NAS
DmeFBgn0028665
GO:0032403 protein complex binding F
ISO
MmuMGI:1201778
GO:0046961 proton-transporting ATPase activity, rotational
mechanism		 F
IDA
SceS000004439
IMP
SceS000004439
ISS
AthAt3g28715
At3g28710
SpoSPAC17A2.03c
GO:0000003 reproduction P
IMP
CelWBGene00016258
GO:0002119 nematode larval development P
IMP
CelWBGene00016258
GO:0006200 ATP catabolic process P
IDA
MmuMGI:1201778
GO:0006811 ion transport P
RCA
SceS000004439
GO:0007034 vacuolar transport P
IDA
SceS000004439
IMP
SceS000004439
GO:0007035 vacuolar acidification P
IMP
DmeFBgn0028665
ISS
PfaPF14_0615
SpoSPAC17A2.03c
TAS
SceS000004439
GO:0008593 regulation of Notch signaling pathway P
IMP
DmeFBgn0028665
GO:0009117 nucleotide metabolic process P
RCA
SceS000004439
GO:0015991 ATP hydrolysis coupled proton transport P
IC
SpoSPAC17A2.03c
GO:0015992 proton transport P
IDA
MmuMGI:1201778
ISS
AthAt3g28715
At3g28710
NAS
DmeFBgn0028665
HsaATP6V0D1
GO:0034220 ion transmembrane transport P
IDA
MmuMGI:1201778
GO:0040007 growth P
IMP
CelWBGene00016258
GO:0050801 ion homeostasis P
RCA
SceS000004439

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1544

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga15379 ENSANGP00000011974
Ashbya gossypii (Ago) ago2650 AER146C
Arabidopsis thaliana (Ath) ath15232 At3g28710.1
Arabidopsis thaliana (Ath) ath15233 At3g28715.1
Caenorhabditis elegans (Cel) cel3066 C30F8.2
(CE29684;
WBGene00016258)
Candida glabrata (Cgl) cgl4684 CAGL0M00660g
Cryptococcus neoformans (Cne) cne2170 181.m08187
Dictyostelium discoideum (Ddi) ddi11589 DDB0185227
Dictyostelium discoideum (Ddi) ddi2130 DDB0217242
Debaryomyces hansenii (Dha) dha4660 DEHA0F06138g
Drosophila melanogaster (Dme) dme16416 CG2934-PA
(FBgn0028665)
Danio rerio (Dre) dre21585 ENSDARP00000009547
Encephalitozoon cuniculi (Ecu) ecu308 19173477
Takifugu rubripes (Fru) fru16799 SINFRUP00000141435
Gallus gallus (Gga) gga4450 ENSGALP00000003494
(ATP6V0D1)
Gallus gallus (Gga) gga11308 ENSGALP00000025533
(ATP6V0D2)		 Q5ZHL0
Gallus gallus (Gga) gga11309 ENSGALP00000025534
Gallus gallus (Gga) gga11310 ENSGALP00000025535
Homo sapiens (Hsa) hsa30481 ENSP00000285393
(ATP6V0D2)		 Q8N8Y2
Homo sapiens (Hsa) hsa12354 ENSP00000290949
(ATP6V0D1)		 P61421
Kluyveromyces lactis (Kla) kla743 KLLA0B04752g
Mus musculus (Mmu) mmu26592 ENSMUSP00000013304
(MGI:1201778)		 P51863
Mus musculus (Mmu) mmu17867 ENSMUSP00000029900
(MGI:1924415)		 Q80SY3
Neurospora crassa (Ncr) ncr3291 NCU03395.2
Oryza sativa (Osa) osa32330 4404.m00126
Plasmodium falciparum (Pfa) pfa1406 PF14_0615
Rattus norvegicus (Rno) rno22856 ENSRNOP00000009334
(RGD:1306900)		 Q5FVL0
Rattus norvegicus (Rno) rno14907 ENSRNOP00000023606
(RGD:1306159)		 Q5M7T6
Saccharomyces cerevisiae (Sce) sce4572 YLR447C
(S000004439)
Schizosaccharomyces pombe (Spo) spo2258 SPAC17A2.03c O13753
Yarrowia lipolytica (Yli) yli6025 YALI0F16181g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000220 vacuolar proton-transporting V-type ATPase, V0
domain		 C
ISS
DmeFBgn0028665
PfaPF14_0615
SpoSPAC17A2.03c
NAS
DmeFBgn0028665
TAS
SceS000004439
GO:0000322 storage vacuole C
RCA
SceS000004439
GO:0000323 lytic vacuole C
RCA
SceS000004439
GO:0000324 fungal-type vacuole C
RCA
SceS000004439
GO:0000325 plant-type vacuole C
IDA
AthAt3g28710
GO:0000329 fungal-type vacuole membrane C
RCA
SceS000004439
GO:0005634 nucleus C
IDA
SpoSPAC17A2.03c
GO:0005768 endosome C
ISO
MmuMGI:1924415
GO:0005769 early endosome C
IDA
MmuMGI:1201778
MGI:1924415
GO:0005773 vacuole C
IDA
AthAt3g28715
At3g28710
GO:0005774 vacuolar membrane C
IDA
AthAt3g28710
SceS000004439
GO:0005886 plasma membrane C
IDA
AthAt3g28710
At3g28715
DmeFBgn0028665
GO:0008021 synaptic vesicle C
ISO
MmuMGI:1201778
GO:0016324 apical plasma membrane C
ISO
MmuMGI:1201778
MGI:1924415
GO:0019717 synaptosome C
ISO
MmuMGI:1201778
GO:0043234 protein complex C
ISO
MmuMGI:1201778
GO:0043679 axon terminus C
ISO
MmuMGI:1201778
GO:0005524 ATP binding F
IC
SpoSPAC17A2.03c
GO:0008553 hydrogen-exporting ATPase activity,
phosphorylative mechanism		 F
IDA
MmuMGI:1201778
ISS
DmeFBgn0028665
NAS
DmeFBgn0028665
GO:0032403 protein complex binding F
ISO
MmuMGI:1201778
GO:0046961 proton-transporting ATPase activity, rotational
mechanism		 F
IDA
SceS000004439
IMP
SceS000004439
ISS
AthAt3g28715
At3g28710
SpoSPAC17A2.03c
GO:0000003 reproduction P
IMP
CelWBGene00016258
GO:0002119 nematode larval development P
IMP
CelWBGene00016258
GO:0006200 ATP catabolic process P
IDA
MmuMGI:1201778
GO:0006811 ion transport P
RCA
SceS000004439
GO:0007034 vacuolar transport P
IDA
SceS000004439
IMP
SceS000004439
GO:0007035 vacuolar acidification P
IMP
DmeFBgn0028665
ISS
PfaPF14_0615
SpoSPAC17A2.03c
TAS
SceS000004439
GO:0008593 regulation of Notch signaling pathway P
IMP
DmeFBgn0028665
GO:0009117 nucleotide metabolic process P
RCA
SceS000004439
GO:0015991 ATP hydrolysis coupled proton transport P
IC
SpoSPAC17A2.03c
GO:0015992 proton transport P
IDA
MmuMGI:1201778
ISS
AthAt3g28715
At3g28710
NAS
DmeFBgn0028665
GO:0034220 ion transmembrane transport P
IDA
MmuMGI:1201778
GO:0040007 growth P
IMP
CelWBGene00016258
GO:0050801 ion homeostasis P
RCA
SceS000004439

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC17A2.03c
(O13753)		 YLR447C
(S000004439)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000220 vacuolar proton-transporting V-type ATPase, V0
domain		 C
ISS
SpoSPAC17A2.03c
TAS
SceS000004439
GO:0000322 storage vacuole C
RCA
SceS000004439
GO:0000323 lytic vacuole C
RCA
SceS000004439
GO:0000324 fungal-type vacuole C
RCA
SceS000004439
GO:0000329 fungal-type vacuole membrane C
RCA
SceS000004439
GO:0005634 nucleus C
IDA
SpoSPAC17A2.03c
GO:0005774 vacuolar membrane C
IDA
SceS000004439
GO:0005524 ATP binding F
IC
SpoSPAC17A2.03c
GO:0046961 proton-transporting ATPase activity, rotational
mechanism		 F
IDA
SceS000004439
IMP
SceS000004439
ISS
SpoSPAC17A2.03c
GO:0006811 ion transport P
RCA
SceS000004439
GO:0007034 vacuolar transport P
IDA
SceS000004439
IMP
SceS000004439
GO:0007035 vacuolar acidification P
ISS
SpoSPAC17A2.03c
TAS
SceS000004439
GO:0009117 nucleotide metabolic process P
RCA
SceS000004439
GO:0015991 ATP hydrolysis coupled proton transport P
IC
SpoSPAC17A2.03c
GO:0050801 ion homeostasis P
RCA
SceS000004439

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GO info in one table:

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