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Search term: YML014W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TRM9
SGD link S000004476
Alternative ID YML014W
Description tRNA methyltransferase, catalyzes esterification of modified uridine nucleotides in tRNA(Arg3) and tRNA(Glu), likely as part of a complex with Trm112p; deletion confers resistance to zymocin
Synonyms YML014W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1331 ACDHYPE

KOGs classification KOGs description
POORLY CHARACTERIZED Predicted methyltransferase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g36310 GI:12324477
Caenorhabditis elegans (Cel) CE01193
(WBGene00016448)		 GI:17552504 Q18489
Caenorhabditis elegans (Cel) CE28888_2 GI:17552176 Q9U3P9
Drosophila melanogaster (Dme) 7291441_2 GI:7291441 Q9W232
Drosophila melanogaster (Dme) 7301414 GI:7301414
Drosophila melanogaster (Dme) 7301415 GI:7301415
Homo sapiens (Hsa) Hs15300401 GI:15300401
Saccharomyces cerevisiae (Sce) YML014w
(S000004476)		 GI:6323627 P49957
Schizosaccharomyces pombe (Spo) SPAC13D6.03c GI:19114593 Q10224
Encephalitozoon cuniculi (Ecu) ECU09g1500 GI:19173271


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004476
SpoSPAC13D6.03c
ISS
SpoSPAC13D6.03c
GO:0005737 cytoplasm C
IDA
SceS000004476
ISS
SpoSPAC13D6.03c
GO:0005829 cytosol C
IDA
SpoSPAC13D6.03c
GO:0008757 S-adenosylmethionine-dependent methyltransferase
activity		 F
RCA
SceS000004476
GO:0016300 tRNA (uracil) methyltransferase
activity		 F
IDA
SceS000004476
ISS
SpoSPAC13D6.03c
GO:0002098 tRNA wobble uridine modification P
IMP
SceS000004476
GO:0006950 response to stress P
IMP
SceS000004476
GO:0009451 RNA modification P
RCA
SceS000004476
GO:0030488 tRNA methylation P
IDA
SceS000004476
ISS
SpoSPAC13D6.03c
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00016448
WBGene00007581

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
44488

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) ALKBH8 GI:195927056
Pan troglodytes (Ptr) ALKBH8 GI:114640181
Canis familiaris (Cfa) ALKBH8 GI:73955199
Mus musculus (Mmu) Alkbh8
(MGI:1914917)		 GI:61675696 Q3V2N8
Rattus norvegicus (Rno) Alkbh8 GI:109480107
Gallus gallus (Gga) ALKBH8 GI:118085116
Drosophila melanogaster (Dme) CG17807
(FBgn0034748)		 GI:24658267
Anopheles gambiae (Aga) AgaP_AGAP011900 GI:58394263
Caenorhabditis elegans (Cel) C14B1.10
(CE28888;
WBGene00007581)		 GI:17552176 Q9U3P9
Schizosaccharomyces pombe (Spo) SPAC13D6.03c GI:19114593 Q10224
Saccharomyces cerevisiae (Sce) TRM9
(S000004476)		 GI:6323627 P49957
Kluyveromyces lactis (Kla) KLLA0B01023g GI:50303269
Magnaporthe grisea (Mgr) MGG_14001 GI:145604428
Neurospora crassa (Ncr) NCU01705.1 GI:32415329
Arabidopsis thaliana (Ath) AT1G36310 GI:79319214
Oryza sativa (Osa) Os02g0750500 GI:115448705


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1914917
GO:0005634 nucleus C
IDA
HsaALKBH8
SceS000004476
SpoSPAC13D6.03c
ISS
SpoSPAC13D6.03c
GO:0005737 cytoplasm C
IDA
SceS000004476
ISS
SpoSPAC13D6.03c
GO:0005829 cytosol C
IDA
HsaALKBH8
SpoSPAC13D6.03c
GO:0003674 molecular_function F
ND
MmuMGI:1914917
GO:0005515 protein binding F
IPI
HsaALKBH8
GO:0008757 S-adenosylmethionine-dependent methyltransferase
activity		 F
RCA
SceS000004476
GO:0016300 tRNA (uracil) methyltransferase
activity		 F
IDA
HsaALKBH8
SceS000004476
ISS
SpoSPAC13D6.03c
GO:0002098 tRNA wobble uridine modification P
IMP
SceS000004476
GO:0006950 response to stress P
IMP
SceS000004476
GO:0006974 response to DNA damage stimulus P
IDA
HsaALKBH8
GO:0008150 biological_process P
ND
MmuMGI:1914917
GO:0009451 RNA modification P
RCA
SceS000004476
GO:0030488 tRNA methylation P
IDA
HsaALKBH8
SceS000004476
ISS
SpoSPAC13D6.03c
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007581

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_983

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga9045 ENSANGP00000021203
Ashbya gossypii (Ago) ago1922 ADR181W
Arabidopsis thaliana (Ath) ath3718 At1g36310.1
Caenorhabditis elegans (Cel) cel1945 C14B1.10
(CE28888;
WBGene00007581)
Caenorhabditis elegans (Cel) cel3509 C35D10.12
(CE01193;
WBGene00016448)
Candida glabrata (Cgl) cgl2271 CAGL0H04807g
Cryptococcus neoformans (Cne) cne4122 177.m02880
Dictyostelium discoideum (Ddi) ddi10472 DDB0184405
Debaryomyces hansenii (Dha) dha3545 DEHA0E06897g
Drosophila melanogaster (Dme) dme6562 CG17807-PA
(FBgn0034748)
Danio rerio (Dre) dre6489 ENSDARP00000003120
(LOC554774)
Danio rerio (Dre) dre7538 ENSDARP00000028739
Encephalitozoon cuniculi (Ecu) ecu1422 19173271
Takifugu rubripes (Fru) fru4289 SINFRUP00000151453
Takifugu rubripes (Fru) fru5355 SINFRUP00000152073
Takifugu rubripes (Fru) fru5356 SINFRUP00000173883
Gallus gallus (Gga) gga18046 ENSGALP00000022260
(C8orf79)
Gallus gallus (Gga) gga3242 ENSGALP00000027679
(ALKBH8)
Gallus gallus (Gga) gga3243 ENSGALP00000027680
Gallus gallus (Gga) gga3244 ENSGALP00000027681
Homo sapiens (Hsa) hsa29941 ENSP00000303257
(C8orf79)		 Q9P272-1
Homo sapiens (Hsa) hsa6496 ENSP00000304230
Kluyveromyces lactis (Kla) kla574 KLLA0B01023g
Mus musculus (Mmu) mmu25868 ENSMUSP00000046985
(MGI:2442328)		 Q80WQ4-1
Mus musculus (Mmu) mmu26952 ENSMUSP00000061511
(MGI:1914917)		 Q80Y20-1
Neurospora crassa (Ncr) ncr1658 NCU01705.2
Oryza sativa (Osa) osa7184 2497.m00101
Oryza sativa (Osa) osa25468 3846.m00184
Plasmodium falciparum (Pfa) pfa492 PF10_0274
Rattus norvegicus (Rno) rno25966 ENSRNOP00000003432
(RGD:1304687)
Rattus norvegicus (Rno) rno12533 ENSRNOP00000015062
(RGD:1304810)
Saccharomyces cerevisiae (Sce) sce4613 YML014W
(S000004476)
Schizosaccharomyces pombe (Spo) spo4356 SPAC13D6.03c Q10224
Yarrowia lipolytica (Yli) yli3247 YALI0D12837g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1914917
MGI:2442328
GO:0005634 nucleus C
IDA
SceS000004476
SpoSPAC13D6.03c
ISS
SpoSPAC13D6.03c
GO:0005737 cytoplasm C
IDA
SceS000004476
ISS
SpoSPAC13D6.03c
GO:0005829 cytosol C
IDA
SpoSPAC13D6.03c
GO:0003674 molecular_function F
ND
MmuMGI:2442328
MGI:1914917
GO:0008757 S-adenosylmethionine-dependent methyltransferase
activity		 F
RCA
SceS000004476
GO:0016300 tRNA (uracil) methyltransferase
activity		 F
IDA
SceS000004476
ISS
SpoSPAC13D6.03c
GO:0002098 tRNA wobble uridine modification P
IMP
SceS000004476
GO:0006950 response to stress P
IMP
SceS000004476
GO:0008150 biological_process P
ND
MmuMGI:1914917
MGI:2442328
GO:0009451 RNA modification P
RCA
SceS000004476
GO:0030488 tRNA methylation P
IDA
SceS000004476
ISS
SpoSPAC13D6.03c
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00016448
WBGene00007581

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC13D6.03c
(Q10224)		 YML014W
(S000004476)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004476
SpoSPAC13D6.03c
ISS
SpoSPAC13D6.03c
GO:0005737 cytoplasm C
IDA
SceS000004476
ISS
SpoSPAC13D6.03c
GO:0005829 cytosol C
IDA
SpoSPAC13D6.03c
GO:0008757 S-adenosylmethionine-dependent methyltransferase
activity		 F
RCA
SceS000004476
GO:0016300 tRNA (uracil) methyltransferase
activity		 F
IDA
SceS000004476
ISS
SpoSPAC13D6.03c
GO:0002098 tRNA wobble uridine modification P
IMP
SceS000004476
GO:0006950 response to stress P
IMP
SceS000004476
GO:0009451 RNA modification P
RCA
SceS000004476
GO:0030488 tRNA methylation P
IDA
SceS000004476
ISS
SpoSPAC13D6.03c

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GO info in one table:

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