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Search term: YML041C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name VPS71
SGD link S000004505
Alternative ID YML041C
Description Nucleosome-binding component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; required for vacuolar protein sorting
Synonyms YML041C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3362 ACDHYP-

KOGs classification KOGs description
POORLY CHARACTERIZED Predicted BBOX Zn-finger protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g37050_1 GI:15239486
Caenorhabditis elegans (Cel) CE16955 GI:17559032
Drosophila melanogaster (Dme) 7296927
(FBgn0031668)		 GI:19920718
Homo sapiens (Hsa) Hs5453617
(ZNHIT1)		 GI:5453617 O43257
Saccharomyces cerevisiae (Sce) YML041c
(S000004505)		 GI:6323600 Q03433
Schizosaccharomyces pombe (Spo) SPBC29A3.05 GI:19112625 O59669


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000812 Swr1 complex C
IDA
SceS000004505
SpoSPBC29A3.05
GO:0005634 nucleus C
IDA
SceS000004505
SpoSPBC29A3.05
GO:0005829 cytosol C
IDA
SpoSPBC29A3.05
GO:0003674 molecular_function F
ND
AthAt5g37050
SpoSPBC29A3.05
GO:0005515 protein binding F
IPI
HsaZNHIT1
GO:0031491 nucleosome binding F
IMP
SceS000004505
GO:0006338 chromatin remodeling P
IDA
SceS000004505
IGI
SceS000004505
IMP
SceS000004505
IPI
SpoSPBC29A3.05
GO:0006623 protein targeting to vacuole P
IMP
SceS000004505
GO:0006730 one-carbon metabolic process P
RCA
SceS000004505
GO:0008150 biological_process P
ND
AthAt5g37050
GO:0009890 negative regulation of biosynthetic
process		 P
RCA
SceS000004505
GO:0016481 negative regulation of transcription P
RCA
SceS000004505
GO:0043486 histone exchange P
IMP
SceS000004505
IPI
SpoSPBC29A3.05
GO:0051276 chromosome organization P
RCA
SceS000004505

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39857

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) VPS71
(S000004505)		 GI:6323600 Q03433
Kluyveromyces lactis (Kla) KLLA0A02145g GI:50302321
Eremothecium gossypii (Ego) AGOS_AAR123C GI:45184947


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000812 Swr1 complex C
IDA
SceS000004505
GO:0005634 nucleus C
IDA
SceS000004505
GO:0031491 nucleosome binding F
IMP
SceS000004505
GO:0006338 chromatin remodeling P
IDA
SceS000004505
IGI
SceS000004505
IMP
SceS000004505
GO:0006623 protein targeting to vacuole P
IMP
SceS000004505
GO:0006730 one-carbon metabolic process P
RCA
SceS000004505
GO:0009890 negative regulation of biosynthetic
process		 P
RCA
SceS000004505
GO:0016481 negative regulation of transcription P
RCA
SceS000004505
GO:0043486 histone exchange P
IMP
SceS000004505
GO:0051276 chromosome organization P
RCA
SceS000004505

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_24675

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago310 AAR123C
Candida glabrata (Cgl) cgl3512 CAGL0J11814g
Debaryomyces hansenii (Dha) dha3174 DEHA0D19569g
Kluyveromyces lactis (Kla) kla92 KLLA0A02145g
Saccharomyces cerevisiae (Sce) sce4641 YML041C
(S000004505)


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000812 Swr1 complex C
IDA
SceS000004505
GO:0005634 nucleus C
IDA
SceS000004505
GO:0031491 nucleosome binding F
IMP
SceS000004505
GO:0006338 chromatin remodeling P
IDA
SceS000004505
IGI
SceS000004505
IMP
SceS000004505
GO:0006623 protein targeting to vacuole P
IMP
SceS000004505
GO:0006730 one-carbon metabolic process P
RCA
SceS000004505
GO:0009890 negative regulation of biosynthetic
process		 P
RCA
SceS000004505
GO:0016481 negative regulation of transcription P
RCA
SceS000004505
GO:0043486 histone exchange P
IMP
SceS000004505
GO:0051276 chromosome organization P
RCA
SceS000004505

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC29A3.05
(O59669)		 YML041C
(S000004505)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000812 Swr1 complex C
IDA
SceS000004505
SpoSPBC29A3.05
GO:0005634 nucleus C
IDA
SceS000004505
SpoSPBC29A3.05
GO:0005829 cytosol C
IDA
SpoSPBC29A3.05
GO:0003674 molecular_function F
ND
SpoSPBC29A3.05
GO:0031491 nucleosome binding F
IMP
SceS000004505
GO:0006338 chromatin remodeling P
IDA
SceS000004505
IGI
SceS000004505
IMP
SceS000004505
IPI
SpoSPBC29A3.05
GO:0006623 protein targeting to vacuole P
IMP
SceS000004505
GO:0006730 one-carbon metabolic process P
RCA
SceS000004505
GO:0009890 negative regulation of biosynthetic
process		 P
RCA
SceS000004505
GO:0016481 negative regulation of transcription P
RCA
SceS000004505
GO:0043486 histone exchange P
IMP
SceS000004505
IPI
SpoSPBC29A3.05
GO:0051276 chromosome organization P
RCA
SceS000004505

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GO info in one table:

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