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Search term: YML049C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RSE1
SGD link S000004513
Alternative ID YML049C
Description Protein involved in pre-mRNA splicing; component of the pre-spliceosome; associates with U2 snRNA; involved in ER to Golgi transport
Synonyms YML049C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1898 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Splicing factor 3b, subunit 3

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g11960 GI:15229912
Arabidopsis thaliana (Ath) At3g55200 GI:18410222
Caenorhabditis elegans (Cel) CE17155
(WBGene00019323)		 GI:17508021 O44985
Drosophila melanogaster (Dme) 7292001 GI:7292001
Homo sapiens (Hsa) Hs11034823 GI:11034823
Saccharomyces cerevisiae (Sce) YML049c
(S000004513)		 GI:6323592 Q04693
Schizosaccharomyces pombe (Spo) SPAPJ698.03c GI:19115326 Q9UTT2
Encephalitozoon cuniculi (Ecu) ECU07g1670 GI:19074588 Q8SUV1


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
ISS
AthAt3g11960
At3g55200
GO:0005681 spliceosomal complex C
NAS
SpoSPAPJ698.03c
RCA
SceS000004513
GO:0005686 U2 snRNP C
IDA
SceS000004513
S000004513
IPI
SceS000004513
ISS
SpoSPAPJ698.03c
GO:0009507 chloroplast C
IDA
AthAt3g55200
GO:0071004 U2-type prespliceosome C
IDA
SceS000004513
GO:0003676 nucleic acid binding F
ISS
AthAt3g55200
At3g11960
GO:0030620 U2 snRNA binding F
IPI
SceS000004513
ISS
SpoSPAPJ698.03c
GO:0000003 reproduction P
IMP
CelWBGene00019323
GO:0000245 spliceosome assembly P
IDA
SceS000004513
ISS
SpoSPAPJ698.03c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IGI
SceS000004513
IMP
SceS000004513
IPI
SceS000004513
ISS
SpoSPAPJ698.03c
GO:0001703 gastrulation with mouth forming
first		 P
IMP
CelWBGene00019323
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00019323
GO:0002119 nematode larval development P
IMP
CelWBGene00019323
GO:0007369 gastrulation P
IMP
CelWBGene00019323
GO:0008150 biological_process P
ND
AthAt3g55200
At3g11960
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00019323
GO:0009790 embryo development P
IMP
CelWBGene00019323
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00019323
GO:0016071 mRNA metabolic process P
RCA
SceS000004513
GO:0040007 growth P
IMP
CelWBGene00019323
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00019323

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68855

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RSE1
(S000004513)		 GI:6323592 Q04693
Kluyveromyces lactis (Kla) KLLA0A08129g GI:50302849
Eremothecium gossypii (Ego) AGOS_AFR382W GI:45198900


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005681 spliceosomal complex C
RCA
SceS000004513
GO:0005686 U2 snRNP C
IDA
SceS000004513
S000004513
IPI
SceS000004513
GO:0071004 U2-type prespliceosome C
IDA
SceS000004513
GO:0030620 U2 snRNA binding F
IPI
SceS000004513
GO:0000245 spliceosome assembly P
IDA
SceS000004513
GO:0000398 nuclear mRNA splicing, via spliceosome P
IGI
SceS000004513
IMP
SceS000004513
IPI
SceS000004513
GO:0016071 mRNA metabolic process P
RCA
SceS000004513

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1500

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga962 ENSANGP00000017759
Ashbya gossypii (Ago) ago3574 AFR382W
Arabidopsis thaliana (Ath) ath16901 At3g55200.1
Arabidopsis thaliana (Ath) ath16903 At3g55220.1
Caenorhabditis elegans (Cel) cel11696 K02F2.3
(CE17155;
WBGene00019323)
Candida glabrata (Cgl) cgl4142 CAGL0L01507g
Cryptococcus neoformans (Cne) cne2182 181.m08199
Dictyostelium discoideum (Ddi) ddi6085 DDB0204844
Debaryomyces hansenii (Dha) dha406 DEHA0A09141g
Drosophila melanogaster (Dme) dme7289 CG13900-PA
(FBgn0035162)
Drosophila melanogaster (Dme) dme7290 CG13900-PB
(FBgn0035162)
Danio rerio (Dre) dre9061 ENSDARP00000018100
(LOC554839)		 Q1LVE8
Danio rerio (Dre) dre9046 ENSDARP00000023230
Danio rerio (Dre) dre9062 ENSDARP00000050427
Takifugu rubripes (Fru) fru17353 SINFRUP00000148066
Takifugu rubripes (Fru) fru17354 SINFRUP00000175656
Gallus gallus (Gga) gga4472 ENSGALP00000003978
(SF3B3)
Gallus gallus (Gga) gga4471 ENSGALP00000003979
Gallus gallus (Gga) gga4470 ENSGALP00000003980
Homo sapiens (Hsa) hsa12450 ENSP00000305790
(SF3B3)		 Q15393-1
Kluyveromyces lactis (Kla) kla358 KLLA0A08129g
Mus musculus (Mmu) mmu26697 ENSMUSP00000045073
(MGI:1289341)		 Q921M3-1
Neurospora crassa (Ncr) ncr382 NCU00396.2
Oryza sativa (Osa) osa6189 2474.m00122
Oryza sativa (Osa) osa78511 7382.m00119
Plasmodium falciparum (Pfa) pfa5119 PFL1680w
Rattus norvegicus (Rno) rno15003 ENSRNOP00000023854 B5DF12
Rattus norvegicus (Rno) rno15004 ENSRNOP00000050585
Saccharomyces cerevisiae (Sce) sce4650 YML049C
(S000004513)
Schizosaccharomyces pombe (Spo) spo3680 SPAPJ698.03c Q9UTT2
Yarrowia lipolytica (Yli) yli2821 YALI0D02717g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1289341
GO:0005634 nucleus C
ISS
AthAt3g55200
At3g55220
GO:0005681 spliceosomal complex C
ISS
PfaPFL1680w
NAS
SpoSPAPJ698.03c
RCA
SceS000004513
GO:0005686 U2 snRNP C
IDA
SceS000004513
S000004513
IPI
SceS000004513
ISS
DmeFBgn0035162
SpoSPAPJ698.03c
GO:0009507 chloroplast C
IDA
AthAt3g55200
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0035162
GO:0071004 U2-type prespliceosome C
IDA
SceS000004513
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0035162
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0035162
GO:0003674 molecular_function F
ND
MmuMGI:1289341
GO:0003676 nucleic acid binding F
ISS
AthAt3g55200
At3g55220
GO:0003684 damaged DNA binding F
ISS
DmeFBgn0035162
GO:0030620 U2 snRNA binding F
IPI
SceS000004513
ISS
SpoSPAPJ698.03c
GO:0000003 reproduction P
IMP
CelWBGene00019323
GO:0000245 spliceosome assembly P
IDA
SceS000004513
ISS
SpoSPAPJ698.03c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0035162
IGI
SceS000004513
IMP
SceS000004513
IPI
SceS000004513
ISS
DmeFBgn0035162
SpoSPAPJ698.03c
GO:0001703 gastrulation with mouth forming
first		 P
IMP
CelWBGene00019323
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00019323
GO:0002119 nematode larval development P
IMP
CelWBGene00019323
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0035162
GO:0007369 gastrulation P
IMP
CelWBGene00019323
GO:0008150 biological_process P
ND
AthAt3g55220
At3g55200
MmuMGI:1289341
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00019323
GO:0008380 RNA splicing P
ISS
PfaPFL1680w
GO:0009790 embryo development P
IMP
CelWBGene00019323
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00019323
GO:0016071 mRNA metabolic process P
RCA
SceS000004513
GO:0040007 growth P
IMP
CelWBGene00019323
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00019323

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAPJ698.03c
(Q9UTT2)		 YML049C
(S000004513)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005681 spliceosomal complex C
NAS
SpoSPAPJ698.03c
RCA
SceS000004513
GO:0005686 U2 snRNP C
IDA
SceS000004513
S000004513
IPI
SceS000004513
ISS
SpoSPAPJ698.03c
GO:0071004 U2-type prespliceosome C
IDA
SceS000004513
GO:0030620 U2 snRNA binding F
IPI
SceS000004513
ISS
SpoSPAPJ698.03c
GO:0000245 spliceosome assembly P
IDA
SceS000004513
ISS
SpoSPAPJ698.03c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IGI
SceS000004513
IMP
SceS000004513
IPI
SceS000004513
ISS
SpoSPAPJ698.03c
GO:0016071 mRNA metabolic process P
RCA
SceS000004513

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GO info in one table:

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