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Search term: YML097C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name VPS9
SGD link S000004563
Alternative ID YML097C
Description A guanine nucleotide exchange factor involved in vesicle-mediated vacuolar protein transport; specifically stimulates the intrinsic guanine nucleotide exchange activity of Vps21p/Rab5: similar to mammalian ras inhibitors; binds ubiquitin
Synonyms YML097C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2319 ACDHYPE

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Vacuolar assembly/sorting protein VPS9

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g19770 GI:15230946
Arabidopsis thaliana (Ath) At5g09320_1 GI:15242388
Caenorhabditis elegans (Cel) CE19123 GI:17555692
Caenorhabditis elegans (Cel) CE19124 GI:17555694 Q9XX20
Caenorhabditis elegans (Cel) CE26367 GI:17567947
Caenorhabditis elegans (Cel) CE26468 GI:17567949 Q9GYH7
Drosophila melanogaster (Dme) 7292054_2
(FBgn0035202)		 GI:19923036
Drosophila melanogaster (Dme) 7292625_1 GI:7292625
Drosophila melanogaster (Dme) 7292625_2 GI:7292625
Homo sapiens (Hsa) Hs14149803 GI:14149803
Homo sapiens (Hsa) Hs20538500 GI:20538500
Homo sapiens (Hsa) Hs7657496_3
(RABGEF1)		 GI:7657496 Q9UJ41
Saccharomyces cerevisiae (Sce) YML097c
(S000004563)		 GI:6323541 P54787
Schizosaccharomyces pombe (Spo) SPBC29A10.11c GI:19112848 O94388
Schizosaccharomyces pombe (Spo) SPBC4F6.10 GI:19112902 O74396
Encephalitozoon cuniculi (Ecu) ECU07g1710 GI:19074592 Q8SUV0


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g09320
GO:0005634 nucleus C
IDA
AthAt3g19770
GO:0005829 cytosol C
IDA
AthAt3g19770
SceS000004563
SpoSPBC29A10.11c
ISS
SpoSPBC29A10.11c
SPBC4F6.10
GO:0016020 membrane C
IDA
AthAt3g19770
GO:0003674 molecular_function F
ND
AthAt5g09320
GO:0005085 guanyl-nucleotide exchange factor
activity		 F
IDA
SceS000004563
ISS
DmeFBgn0035202
SpoSPBC4F6.10
SPBC29A10.11c
GO:0005089 Rho guanyl-nucleotide exchange factor
activity		 F
IDA
AthAt3g19770
GO:0005515 protein binding F
IPI
HsaRABGEF1
GO:0043130 ubiquitin binding F
IDA
SceS000004563
GO:0000011 vacuole inheritance P
IMP
SceS000004563
GO:0000919 cell plate assembly P
IMP
AthAt3g19770
GO:0006623 protein targeting to vacuole P
IMP
SceS000004563
ISS
SpoSPBC29A10.11c
SPBC4F6.10
GO:0006810 transport P
ISS
AthAt5g09320
At3g19770
GO:0009790 embryo development P
IMP
AthAt3g19770
GO:0042546 cell wall biogenesis P
IMP
AthAt3g19770
GO:0048528 post-embryonic root development P
IMP
AthAt3g19770

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
29907

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) VPS9
(S000004563)		 GI:6323541 P54787
Kluyveromyces lactis (Kla) KLLA0D10263g GI:50307079
Eremothecium gossypii (Ego) AGOS_ADL349W GI:45187523
Magnaporthe grisea (Mgr) MGG_05379 GI:145615097
Neurospora crassa (Ncr) NCU07301.1 GI:32414215


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005829 cytosol C
IDA
SceS000004563
GO:0005085 guanyl-nucleotide exchange factor
activity		 F
IDA
SceS000004563
GO:0043130 ubiquitin binding F
IDA
SceS000004563
GO:0000011 vacuole inheritance P
IMP
SceS000004563
GO:0006623 protein targeting to vacuole P
IMP
SceS000004563

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1263

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga964 ENSANGP00000007196
Ashbya gossypii (Ago) ago1391 ADL349W
Arabidopsis thaliana (Ath) ath14261 At3g19770.1
Arabidopsis thaliana (Ath) ath23124 At5g09320.1
Caenorhabditis elegans (Cel) cel9751 F49E7.1b
(CE26468)
Caenorhabditis elegans (Cel) cel18448 Y39A1A.5
(CE32521;
WBGene00012644)
Candida glabrata (Cgl) cgl2365 CAGL0H06941g
Cryptococcus neoformans (Cne) cne4344 177.m03098
Dictyostelium discoideum (Ddi) ddi8459 DDB0218662
Debaryomyces hansenii (Dha) dha289 DEHA0A06479g
Drosophila melanogaster (Dme) dme7358 CG9139-PA
(FBgn0035202)
Danio rerio (Dre) dre26876 ENSDARP00000013482
(LOC555172)
Danio rerio (Dre) dre2019 ENSDARP00000016779
(zgc:65944)		 Q6P6Y4
Danio rerio (Dre) dre2023 ENSDARP00000046679
Takifugu rubripes (Fru) fru23979 SINFRUP00000145619
Takifugu rubripes (Fru) fru26001 SINFRUP00000152525
Takifugu rubripes (Fru) fru23980 SINFRUP00000171955
Takifugu rubripes (Fru) fru23978 SINFRUP00000172302
Gallus gallus (Gga) gga8830 ENSGALP00000004112
Gallus gallus (Gga) gga8831 ENSGALP00000004113
(RABGEF1)
Homo sapiens (Hsa) hsa28702 ENSP00000284957
(RABGEF1)		 Q9UJ41-2
Kluyveromyces lactis (Kla) kla2517 KLLA0D10263g
Mus musculus (Mmu) mmu21014 ENSMUSP00000026390
(MGI:1929459)		 Q9JM13
Neurospora crassa (Ncr) ncr7107 NCU07301.2
Oryza sativa (Osa) osa88107 9541.m00176
Plasmodium falciparum (Pfa) pfa2077 MAL8P1.82
Rattus norvegicus (Rno) rno8451 ENSRNOP00000001196
(RGD:1307295)		 B5DEJ8
Saccharomyces cerevisiae (Sce) sce4703 YML097C
(S000004563)
Schizosaccharomyces pombe (Spo) spo15 SPBC4F6.10 O74396
Yarrowia lipolytica (Yli) yli5219 YALI0E32593g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g09320
MmuMGI:1929459
GO:0005634 nucleus C
IDA
AthAt3g19770
GO:0005829 cytosol C
IDA
AthAt3g19770
SceS000004563
ISS
SpoSPBC4F6.10
GO:0016020 membrane C
IDA
AthAt3g19770
GO:0003674 molecular_function F
ND
AthAt5g09320
MmuMGI:1929459
GO:0005085 guanyl-nucleotide exchange factor
activity		 F
IDA
SceS000004563
ISS
DmeFBgn0035202
SpoSPBC4F6.10
GO:0005089 Rho guanyl-nucleotide exchange factor
activity		 F
IDA
AthAt3g19770
GO:0043130 ubiquitin binding F
IDA
SceS000004563
GO:0000011 vacuole inheritance P
IMP
SceS000004563
GO:0000919 cell plate assembly P
IMP
AthAt3g19770
GO:0006623 protein targeting to vacuole P
IMP
SceS000004563
ISS
SpoSPBC4F6.10
GO:0006810 transport P
ISS
AthAt5g09320
At3g19770
GO:0008150 biological_process P
ND
MmuMGI:1929459
GO:0009790 embryo development P
IMP
AthAt3g19770
GO:0042546 cell wall biogenesis P
IMP
AthAt3g19770
GO:0048528 post-embryonic root development P
IMP
AthAt3g19770

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC29A10.11c
(O94388)		 YML097C
(S000004563)
SPBC4F6.10
(O74396)		 YML097C
(S000004563)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005829 cytosol C
IDA
SceS000004563
SpoSPBC29A10.11c
ISS
SpoSPBC29A10.11c
SPBC4F6.10
GO:0005085 guanyl-nucleotide exchange factor
activity		 F
IDA
SceS000004563
ISS
SpoSPBC4F6.10
SPBC29A10.11c
GO:0043130 ubiquitin binding F
IDA
SceS000004563
GO:0000011 vacuole inheritance P
IMP
SceS000004563
GO:0006623 protein targeting to vacuole P
IMP
SceS000004563
ISS
SpoSPBC29A10.11c
SPBC4F6.10

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s.khadayate@ucl.ac.uk