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Search term: YML098W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TAF13
SGD link S000004564
Alternative ID YML098W
Description TFIID subunit (19 kDa), involved in RNA polymerase II transcription initiation, similar to histone H4 with atypical histone fold motif of Spt3-like transcription factors
Synonyms YML098W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3901 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Transcription initiation factor IID subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g02680 GI:15217827
Caenorhabditis elegans (Cel) CE02139_1 GI:17536591
Drosophila melanogaster (Dme) 7298660
(FBgn0032847)		 GI:19921578
Homo sapiens (Hsa) Hs5032155
(TAF13)		 GI:5032155 Q15543
Saccharomyces cerevisiae (Sce) YML098w
(S000004564)		 GI:6323540 P11747
Schizosaccharomyces pombe (Spo) SPCC1494.02c GI:19076027 O60076
Encephalitozoon cuniculi (Ecu) ECU04g0950 GI:19074172 Q8SS37


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000785 chromatin C
NAS
SpoSPCC1494.02c
GO:0005634 nucleus C
IDA
SceS000004564
GO:0005654 nucleoplasm C
EXP
HsaTAF13
GO:0005667 transcription factor complex C
ISS
AthAt1g02680
GO:0005669 transcription factor TFIID complex C
IDA
HsaTAF13
SceS000004564
ISS
DmeFBgn0032847
SpoSPCC1494.02c
NAS
HsaTAF13
GO:0003700 transcription factor activity F
NAS
HsaTAF13
GO:0003702 RNA polymerase II transcription factor
activity		 F
ISS
AthAt1g02680
GO:0005515 protein binding F
IPI
HsaTAF13
GO:0008022 protein C-terminus binding F
IPI
HsaTAF13
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IC
HsaTAF13
IDA
SceS000004564
ISS
DmeFBgn0032847
SpoSPCC1494.02c
GO:0006352 transcription initiation P
ISS
AthAt1g02680
NAS
HsaTAF13
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaTAF13
IC
HsaTAF13
ISS
DmeFBgn0032847
SpoSPCC1494.02c
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaTAF13
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000004564
GO:0045449 regulation of transcription P
ISS
SpoSPCC1494.02c
GO:0051123 RNA polymerase II transcriptional preinitiation
complex assembly		 P
IMP
SceS000004564

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39837

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) TAF13
(S000004564)		 GI:6323540 P11747
Kluyveromyces lactis (Kla) KLLA0D10219g GI:50307075
Eremothecium gossypii (Ego) AGOS_ADL347C GI:45187525


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004564
GO:0005669 transcription factor TFIID complex C
IDA
SceS000004564
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IDA
SceS000004564
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000004564
GO:0051123 RNA polymerase II transcriptional preinitiation
complex assembly		 P
IMP
SceS000004564

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3855

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga10027 ENSANGP00000011751
Ashbya gossypii (Ago) ago1393 ADL347C
Arabidopsis thaliana (Ath) ath186 At1g02680.1
Caenorhabditis elegans (Cel) cel1920 C14A4.10
(CE33030;
WBGene00006397)
Candida glabrata (Cgl) cgl2363 CAGL0H06897g
Dictyostelium discoideum (Ddi) ddi13455 DDB0231002
Debaryomyces hansenii (Dha) dha2611 DEHA0D07106g
Drosophila melanogaster (Dme) dme3092 CG10756-PA
(FBgn0032847)
Danio rerio (Dre) dre24329 ENSDARP00000036453
Encephalitozoon cuniculi (Ecu) ecu810 19074172
Gallus gallus (Gga) gga1767 ENSGALP00000024457
(TAF13)		 Q5ZLI0
Homo sapiens (Hsa) hsa1624 ENSP00000353263
Kluyveromyces lactis (Kla) kla2515 KLLA0D10219g
Mus musculus (Mmu) mmu17403 ENSMUSP00000053470
(MGI:1913500)		 P61216
Mus musculus (Mmu) mmu3629 ENSMUSP00000074753
Neurospora crassa (Ncr) ncr3359 NCU03464.2
Oryza sativa (Osa) osa11611 2800.m00140
Oryza sativa (Osa) osa12599 2845.m00133
Rattus norvegicus (Rno) rno16861 ENSRNOP00000027530
(RGD:1305398)		 B2RYQ7
Saccharomyces cerevisiae (Sce) sce4704 YML098W
(S000004564)
Schizosaccharomyces pombe (Spo) spo2475 SPCC1494.02c O60076
Yarrowia lipolytica (Yli) yli3107 YALI0D09625g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000785 chromatin C
NAS
SpoSPCC1494.02c
GO:0005634 nucleus C
IDA
MmuMGI:1913500
SceS000004564
GO:0005667 transcription factor complex C
ISS
AthAt1g02680
GO:0005669 transcription factor TFIID complex C
IDA
SceS000004564
ISS
DmeFBgn0032847
SpoSPCC1494.02c
GO:0003677 DNA binding F
IDA
MmuMGI:1913500
GO:0003702 RNA polymerase II transcription factor
activity		 F
ISS
AthAt1g02680
GO:0005515 protein binding F
IPI
MmuMGI:1913500
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IDA
SceS000004564
ISS
DmeFBgn0032847
SpoSPCC1494.02c
GO:0006352 transcription initiation P
ISS
AthAt1g02680
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
DmeFBgn0032847
SpoSPCC1494.02c
GO:0008150 biological_process P
ND
MmuMGI:1913500
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000004564
GO:0045449 regulation of transcription P
ISS
SpoSPCC1494.02c
GO:0051123 RNA polymerase II transcriptional preinitiation
complex assembly		 P
IMP
SceS000004564

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC1494.02c
(O60076)		 YML098W
(S000004564)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000785 chromatin C
NAS
SpoSPCC1494.02c
GO:0005634 nucleus C
IDA
SceS000004564
GO:0005669 transcription factor TFIID complex C
IDA
SceS000004564
ISS
SpoSPCC1494.02c
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IDA
SceS000004564
ISS
SpoSPCC1494.02c
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
SpoSPCC1494.02c
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000004564
GO:0045449 regulation of transcription P
ISS
SpoSPCC1494.02c
GO:0051123 RNA polymerase II transcriptional preinitiation
complex assembly		 P
IMP
SceS000004564

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