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Search term: YMR005W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TAF4
SGD link S000004607
Alternative ID YMR005W
Description TFIID subunit (48 kDa), involved in RNA polymerase II transcription initiation; potential Cdc28p substrate
Synonyms YMR005W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2341 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING TATA box binding protein (TBP)-associated factor, RNA polymerase II

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g27720 GI:15217691
Arabidopsis thaliana (Ath) At5g43130 GI:15239190
Caenorhabditis elegans (Cel) CE18160 GI:17509349
Drosophila melanogaster (Dme) 7294182
(FBgn0010280)		 GI:17647987 A4V201
Drosophila melanogaster (Dme) 7298224 GI:17647729
Homo sapiens (Hsa) Hs22044658 GI:22044658
Homo sapiens (Hsa) Hs22059582 GI:22059582
Homo sapiens (Hsa) Hs4507349 GI:4507349
Saccharomyces cerevisiae (Sce) YMR005w
(S000004607)		 GI:6323647 P50105
Schizosaccharomyces pombe (Spo) SPAC23G3.09 GI:19114021 Q9P7S4
Encephalitozoon cuniculi (Ecu) ECU09g0270 GI:19173147


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000785 chromatin C
NAS
SpoSPAC23G3.09
GO:0005634 nucleus C
IDA
SpoSPAC23G3.09
NAS
DmeFBgn0010280
GO:0005669 transcription factor TFIID complex C
IDA
SceS000004607
IPI
DmeFBgn0010280
ISS
DmeFBgn0010280
SpoSPAC23G3.09
GO:0003682 chromatin binding F
IDA
SceS000004607
GO:0003702 RNA polymerase II transcription factor
activity		 F
ISS
SpoSPAC23G3.09
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IC
SpoSPAC23G3.09
IDA
SceS000004607
IPI
DmeFBgn0010280
ISS
DmeFBgn0010280
GO:0016986 transcription initiation factor
activity		 F
ISS
AthAt5g43130
At1g27720
SpoSPAC23G3.09
GO:0006352 transcription initiation P
RCA
SceS000004607
GO:0006355 regulation of transcription, DNA-dependent P
IPI
DmeFBgn0010280
NAS
DmeFBgn0010280
GO:0006366 transcription from RNA polymerase II
promoter		 P
RCA
SceS000004607
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
IPI
DmeFBgn0010280
ISS
DmeFBgn0010280
SpoSPAC23G3.09
GO:0007517 muscle organ development P
IMP
DmeFBgn0010280
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000004607
GO:0045941 positive regulation of transcription P
ISS
SpoSPAC23G3.09
GO:0045944 positive regulation of transcription from RNA
polymerase II promoter		 P
IDA
DmeFBgn0010280
GO:0048813 dendrite morphogenesis P
IMP
DmeFBgn0010280
GO:0051123 RNA polymerase II transcriptional preinitiation
complex assembly		 P
IC
SceS000004607
ISS
SpoSPAC23G3.09
GO:0051325 interphase P
RCA
SceS000004607

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39878

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) TAF4
(S000004607)		 GI:6323647 P50105
Kluyveromyces lactis (Kla) KLLA0C05962g GI:50305011
Eremothecium gossypii (Ego) AGOS_ACL016C GI:45185672


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005669 transcription factor TFIID complex C
IDA
SceS000004607
GO:0003682 chromatin binding F
IDA
SceS000004607
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IDA
SceS000004607
GO:0006352 transcription initiation P
RCA
SceS000004607
GO:0006366 transcription from RNA polymerase II
promoter		 P
RCA
SceS000004607
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000004607
GO:0051123 RNA polymerase II transcriptional preinitiation
complex assembly		 P
IC
SceS000004607
GO:0051325 interphase P
RCA
SceS000004607

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_17709

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago1033 ACL016C
Candida glabrata (Cgl) cgl3508 CAGL0J11726g
Debaryomyces hansenii (Dha) dha5495 DEHA0F24838g
Kluyveromyces lactis (Kla) kla1462 KLLA0C05962g
Saccharomyces cerevisiae (Sce) sce4751 YMR005W
(S000004607)
Schizosaccharomyces pombe (Spo) spo4686 SPAC23G3.09 Q9P7S4
Yarrowia lipolytica (Yli) yli5612 YALI0F06372g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000785 chromatin C
NAS
SpoSPAC23G3.09
GO:0005634 nucleus C
IDA
SpoSPAC23G3.09
GO:0005669 transcription factor TFIID complex C
IDA
SceS000004607
ISS
SpoSPAC23G3.09
GO:0003682 chromatin binding F
IDA
SceS000004607
GO:0003702 RNA polymerase II transcription factor
activity		 F
ISS
SpoSPAC23G3.09
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IC
SpoSPAC23G3.09
IDA
SceS000004607
GO:0016986 transcription initiation factor
activity		 F
ISS
SpoSPAC23G3.09
GO:0006352 transcription initiation P
RCA
SceS000004607
GO:0006366 transcription from RNA polymerase II
promoter		 P
RCA
SceS000004607
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
SpoSPAC23G3.09
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000004607
GO:0045941 positive regulation of transcription P
ISS
SpoSPAC23G3.09
GO:0051123 RNA polymerase II transcriptional preinitiation
complex assembly		 P
IC
SceS000004607
ISS
SpoSPAC23G3.09
GO:0051325 interphase P
RCA
SceS000004607

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC23G3.09
(Q9P7S4)		 YMR005W
(S000004607)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000785 chromatin C
NAS
SpoSPAC23G3.09
GO:0005634 nucleus C
IDA
SpoSPAC23G3.09
GO:0005669 transcription factor TFIID complex C
IDA
SceS000004607
ISS
SpoSPAC23G3.09
GO:0003682 chromatin binding F
IDA
SceS000004607
GO:0003702 RNA polymerase II transcription factor
activity		 F
ISS
SpoSPAC23G3.09
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IC
SpoSPAC23G3.09
IDA
SceS000004607
GO:0016986 transcription initiation factor
activity		 F
ISS
SpoSPAC23G3.09
GO:0006352 transcription initiation P
RCA
SceS000004607
GO:0006366 transcription from RNA polymerase II
promoter		 P
RCA
SceS000004607
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
SpoSPAC23G3.09
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000004607
GO:0045941 positive regulation of transcription P
ISS
SpoSPAC23G3.09
GO:0051123 RNA polymerase II transcriptional preinitiation
complex assembly		 P
IC
SceS000004607
ISS
SpoSPAC23G3.09
GO:0051325 interphase P
RCA
SceS000004607

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