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Search term: YMR038C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CCS1
SGD link S000004641
Alternative ID YMR038C
Description Copper chaperone for superoxide dismutase Sod1p, involved in oxidative stress protection; Met-X-Cys-X2-Cys motif within the N-terminal portion is involved in insertion of copper into Sod1p under conditions of copper deprivation
Synonyms YMR038C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4656 A-DHY--

KOGs classification KOGs description
METABOLISM Copper chaperone for superoxide dismutase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g12520 GI:8778642
Drosophila melanogaster (Dme) 7303790 GI:7303790 A1Z850
Homo sapiens (Hsa) Hs4826665
(CCS)		 GI:4826665 O14618
Saccharomyces cerevisiae (Sce) YMR038c
(S000004641)		 GI:6323681 P40202


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005625 soluble fraction C
TAS
HsaCCS
GO:0005634 nucleus C
IDA
HsaCCS
SceS000004641
GO:0005737 cytoplasm C
IDA
HsaCCS
GO:0005743 mitochondrial inner membrane C
IDA
SceS000004641
GO:0005829 cytosol C
IDA
SceS000004641
GO:0009507 chloroplast C
IDA
AthAt1g12520
GO:0004784 superoxide dismutase activity F
IDA
AthAt1g12520
IGI
AthAt1g12520
IMP
AthAt1g12520
GO:0005375 copper ion transmembrane transporter
activity		 F
TAS
HsaCCS
GO:0005507 copper ion binding F
TAS
HsaCCS
GO:0005515 protein binding F
IPI
HsaCCS
GO:0016532 superoxide dismutase copper chaperone
activity		 F
IGI
SceS000004641
IMP
SceS000004641
ISS
AthAt1g12520
SceS000004641
GO:0006878 cellular copper ion homeostasis P
TAS
AthAt1g12520
GO:0015680 intracellular copper ion transport P
IMP
SceS000004641
ISS
SceS000004641
TAS
HsaCCS

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
104102

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) CCS1
(S000004641)		 GI:6323681 P40202
Kluyveromyces lactis (Kla) KLLA0F26917g GI:50312483
Magnaporthe grisea (Mgr) MGG_05281 GI:145601985
Neurospora crassa (Ncr) NCU07851.1 GI:32416158


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004641
GO:0005743 mitochondrial inner membrane C
IDA
SceS000004641
GO:0005829 cytosol C
IDA
SceS000004641
GO:0016532 superoxide dismutase copper chaperone
activity		 F
IGI
SceS000004641
IMP
SceS000004641
ISS
SceS000004641
GO:0015680 intracellular copper ion transport P
IMP
SceS000004641
ISS
SceS000004641

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_8695

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga2476 ENSANGP00000015070
Ashbya gossypii (Ago) ago682 ABR091C
Arabidopsis thaliana (Ath) ath1318 At1g12520.1
Candida glabrata (Cgl) cgl1491 CAGL0F06017g
Cryptococcus neoformans (Cne) cne3087 167.m03391
Dictyostelium discoideum (Ddi) ddi11262 DDB0189222
Debaryomyces hansenii (Dha) dha5545 DEHA0F25960g
Kluyveromyces lactis (Kla) kla5277 KLLA0F26917g
Neurospora crassa (Ncr) ncr7647 NCU07851.2
Oryza sativa (Osa) osa43851 5497.m00148
Saccharomyces cerevisiae (Sce) sce4788 YMR038C
(S000004641)
Schizosaccharomyces pombe (Spo) spo1865 SPAC22E12.04 Q10357
Yarrowia lipolytica (Yli) yli6612 YALI0F30877g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004641
SpoSPAC22E12.04
GO:0005743 mitochondrial inner membrane C
IDA
SceS000004641
ISS
SpoSPAC22E12.04
GO:0005829 cytosol C
IDA
SceS000004641
SpoSPAC22E12.04
ISS
SpoSPAC22E12.04
GO:0009507 chloroplast C
IDA
AthAt1g12520
GO:0004784 superoxide dismutase activity F
IDA
AthAt1g12520
IGI
AthAt1g12520
IMP
AthAt1g12520
GO:0016531 copper chaperone activity F
IDA
SpoSPAC22E12.04
GO:0016532 superoxide dismutase copper chaperone
activity		 F
IGI
SceS000004641
SpoSPAC22E12.04
IMP
SceS000004641
ISS
AthAt1g12520
SceS000004641
GO:0006878 cellular copper ion homeostasis P
IGI
SpoSPAC22E12.04
TAS
AthAt1g12520
GO:0010038 response to metal ion P
IGI
SpoSPAC22E12.04
GO:0015680 intracellular copper ion transport P
IMP
SceS000004641
ISS
SceS000004641

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC22E12.04
(Q10357)		 YMR038C
(S000004641)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004641
SpoSPAC22E12.04
GO:0005743 mitochondrial inner membrane C
IDA
SceS000004641
ISS
SpoSPAC22E12.04
GO:0005829 cytosol C
IDA
SceS000004641
SpoSPAC22E12.04
ISS
SpoSPAC22E12.04
GO:0016531 copper chaperone activity F
IDA
SpoSPAC22E12.04
GO:0016532 superoxide dismutase copper chaperone
activity		 F
IGI
SceS000004641
SpoSPAC22E12.04
IMP
SceS000004641
ISS
SceS000004641
GO:0006878 cellular copper ion homeostasis P
IGI
SpoSPAC22E12.04
GO:0010038 response to metal ion P
IGI
SpoSPAC22E12.04
GO:0015680 intracellular copper ion transport P
IMP
SceS000004641
ISS
SceS000004641

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