Search term: YMR042W

Gene summary:

KOG results:

KOG name	Phylogenetic pattern (and link to KOGs with this pattern)
KOG0015	-CDHYPE

KOGs classification	KOGs description
INFORMATION STORAGE AND PROCESSING	Regulator of arginine metabolism and related MADS box-containing transcription factors

Species	KOG link	NCBI link	UniProt link
Caenorhabditis elegans (Cel)	CE05534 (WBGene00006844)	GI:17506351	Q18955
Drosophila melanogaster (Dme)	7291774	GI:7291774	B7YZQ0
Homo sapiens (Hsa)	Hs4507205 (SRF)	GI:4507205	P11831
Saccharomyces cerevisiae (Sce)	YMR042w (S000004645)	GI:6323685	P07249
Saccharomyces cerevisiae (Sce)	YMR043w (S000004646)	GI:6323686	P11746
Schizosaccharomyces pombe (Spo)	SPAC11E3.06	GI:19115843	P78926
Encephalitozoon cuniculi (Ecu)	ECU07g1740	GI:19074595	Q8SUU7
Caenorhabditis elegans (Cel)	CE05534 (WBGene00006844)	GI:17506351	Q18955
Drosophila melanogaster (Dme)	7291774	GI:7291774	B7YZQ0
Homo sapiens (Hsa)	Hs4507205 (SRF)	GI:4507205	P11831
Saccharomyces cerevisiae (Sce)	YMR042w (S000004645)	GI:6323685	P07249
Saccharomyces cerevisiae (Sce)	YMR043w (S000004646)	GI:6323686	P11746
Schizosaccharomyces pombe (Spo)	SPAC11E3.06	GI:19115843	P78926
Encephalitozoon cuniculi (Ecu)	ECU07g1740	GI:19074595	Q8SUU7
Caenorhabditis elegans (Cel)	CE05534 (WBGene00006844)	GI:17506351	Q18955
Drosophila melanogaster (Dme)	7291774	GI:7291774	B7YZQ0
Homo sapiens (Hsa)	Hs4507205 (SRF)	GI:4507205	P11831
Saccharomyces cerevisiae (Sce)	YMR042w (S000004645)	GI:6323685	P07249
Saccharomyces cerevisiae (Sce)	YMR043w (S000004646)	GI:6323686	P11746
Schizosaccharomyces pombe (Spo)	SPAC11E3.06	GI:19115843	P78926
Encephalitozoon cuniculi (Ecu)	ECU07g1740	GI:19074595	Q8SUU7

GO terms for KOG results:

GO ID	GO term	GO aspect	Evidence codes and associations
GO:0000978			TAS Spo SPAC11E3.06
GO:0000790	nuclear chromatin	C	IDA Sce S000004646
GO:0005634	nucleus	C	IC Spo SPAC11E3.06 IDA Hsa SRF Sce S000004645 Spo SPAC11E3.06 IPI Sce S000004646
GO:0005737	cytoplasm	C	IDA Hsa SRF TAS Hsa SRF
GO:0003677	DNA binding	F	IDA Sce S000004646 IMP Sce S000004646 ISS Spo SPAC11E3.06 TAS Sce S000004645
GO:0003688	DNA replication origin binding	F	IDA Sce S000004646
GO:0003700	transcription factor activity	F	IDA Hsa SRF Sce S000004646
GO:0003704	specific RNA polymerase II transcription factor activity	F	IDA Hsa SRF Sce S000004645 NAS Spo SPAC11E3.06
GO:0005515	protein binding	F	IPI Hsa SRF
GO:0008134	transcription factor binding	F	IPI Hsa SRF
GO:0008301	DNA bending activity	F	IDA Sce S000004646 IMP Sce S000004646 RCA Sce S000004645
GO:0010736	serum response element binding	F	IDA Hsa SRF
GO:0042803	protein homodimerization activity	F	IPI Hsa SRF
GO:0043565	sequence-specific DNA binding	F	IDA Sce S000004646
GO:0000003	reproduction	P	IMP Cel WBGene00006844
GO:0001829	trophectodermal cell differentiation	P	IDA Hsa SRF
GO:0001947	heart looping	P	ISS Hsa SRF
GO:0002009	morphogenesis of an epithelium	P	IMP Cel WBGene00006844
GO:0002042	cell migration involved in sprouting angiogenesis	P	IMP Hsa SRF
GO:0002119	nematode larval development	P	IMP Cel WBGene00006844
GO:0006270	DNA-dependent DNA replication initiation	P	IMP Sce S000004646
GO:0006357	regulation of transcription from RNA polymerase II promoter	P	IDA Sce S000004646
GO:0006414	translational elongation	P	RCA Sce S000004645
GO:0006525	arginine metabolic process	P	TAS Sce S000004645
GO:0007507	heart development	P	ISS Hsa SRF
GO:0007532	regulation of transcription, mating-type specific	P	IMP Spo SPAC11E3.06
GO:0009636	response to toxin	P	TAS Hsa SRF
GO:0009725	response to hormone stimulus	P	IDA Hsa SRF
GO:0009792	embryo development ending in birth or egg hatching	P	IMP Cel WBGene00006844
GO:0009891	positive regulation of biosynthetic process	P	RCA Sce S000004646
GO:0009893	positive regulation of metabolic process	P	RCA Sce S000004646
GO:0010171	body morphogenesis	P	IMP Cel WBGene00006844
GO:0010557	positive regulation of macromolecule biosynthetic process	P	RCA Sce S000004646
GO:0010628	positive regulation of gene expression	P	RCA Sce S000004646
GO:0010735	positive regulation of transcription via serum response element binding	P	IDA Hsa SRF
GO:0031325	positive regulation of cellular metabolic process	P	RCA Sce S000004646
GO:0031328	positive regulation of cellular biosynthetic process	P	RCA Sce S000004646
GO:0032569	gene-specific transcription from RNA polymerase II promoter	P	NAS Spo SPAC11E3.06
GO:0034097	response to cytokine stimulus	P	IMP Hsa SRF NAS Hsa SRF
GO:0040007	growth	P	IMP Cel WBGene00006844
GO:0040010	positive regulation of growth rate	P	IMP Cel WBGene00006844
GO:0040011	locomotion	P	IMP Cel WBGene00006844
GO:0045597	positive regulation of cell differentiation	P	IDA Hsa SRF
GO:0045941	positive regulation of transcription	P	RCA Sce S000004646
GO:0045944	positive regulation of transcription from RNA polymerase II promoter	P	IDA Hsa SRF Sce S000004645 RCA Sce S000004646
GO:0045987	positive regulation of smooth muscle contraction	P	IDA Hsa SRF
GO:0046716	muscle cell homeostasis	P	ISS Hsa SRF
GO:0048518	positive regulation of biological process	P	RCA Sce S000004646
GO:0048666	neuron development	P	TAS Hsa SRF
GO:0051049	regulation of transport	P	RCA Sce S000004645 S000004646
GO:0051150	regulation of smooth muscle cell differentiation	P	TAS Hsa SRF
GO:0060055	angiogenesis involved in wound healing	P	TAS Hsa SRF
GO:0060261	positive regulation of transcription initiation from RNA polymerase II promoter	P	IDA Hsa SRF

OrthoMCL results:

OrthoMCL cluster	Phylogenetic pattern
OG1_10351

Species	OrthoMCL sequence	Model organism protein page	UniProt link
Arabidopsis thaliana (Ath)	ath11463	At2g42830.1
Arabidopsis thaliana (Ath)	ath11464	At2g42830.2
Arabidopsis thaliana (Ath)	ath17287	At3g58780.1
Arabidopsis thaliana (Ath)	ath18721	At4g09960.1
Arabidopsis thaliana (Ath)	ath18722	At4g09960.2
Arabidopsis thaliana (Ath)	ath19776	At4g18960.1
Candida glabrata (Cgl)	cgl1499	CAGL0F06259g
Oryza sativa (Osa)	osa10190	2722.m00200
Oryza sativa (Osa)	osa28145	4192.m00133
Oryza sativa (Osa)	osa39271	4988.m00144
Saccharomyces cerevisiae (Sce)	sce4792	YMR042W (S000004645)

GO terms for OrthoMCL results:

GO ID	GO term	GO aspect	Evidence codes and associations
GO:0005634	nucleus	C	IDA Sce S000004645 ISS Ath At2g42830
GO:0003677	DNA binding	F	IDA Ath At4g18960 ISS Ath At3g58780 TAS Sce S000004645
GO:0003700	transcription factor activity	F	IDA Ath At4g09960 ISS Ath At2g42830 At3g58780 At4g09960 At4g18960 TAS Ath At4g18960
GO:0003704	specific RNA polymerase II transcription factor activity	F	IDA Sce S000004645
GO:0005515	protein binding	F	IPI Ath At2g42830 At3g58780 At4g09960 ISS Ath At2g42830
GO:0008301	DNA bending activity	F	RCA Sce S000004645
GO:0006355	regulation of transcription, DNA-dependent	P	ISS Ath At2g42830 At4g09960
GO:0006414	translational elongation	P	RCA Sce S000004645
GO:0006525	arginine metabolic process	P	TAS Sce S000004645
GO:0045944	positive regulation of transcription from RNA polymerase II promoter	P	IDA Sce S000004645
GO:0048366	leaf development	P	IEP Ath At4g18960
GO:0048440	carpel development	P	IMP Ath At2g42830 At3g58780 At4g09960 At4g18960
GO:0048443	stamen development	P	IMP Ath At4g18960
GO:0048481	ovule development	P	IMP Ath At2g42830 At3g58780 At4g09960
GO:0048497	maintenance of floral organ identity	P	IMP Ath At4g18960
GO:0051049	regulation of transport	P	RCA Sce S000004645

Curated yeast ortholog results:

S. pombe systematic ID	S. cerevisiae systematic ID
SPBC19G7.06 (O42954)	YMR042W (S000004645)
SPAC11E3.06 (P78926)	YMR042W (S000004645)

GO terms for curated homolog results:

GO ID	GO term	GO aspect	Evidence codes and associations
GO:0000978			TAS Spo SPAC11E3.06
GO:0005634	nucleus	C	IC Spo SPAC11E3.06 IDA Sce S000004645 Spo SPAC11E3.06
GO:0005667	transcription factor complex	C	TAS Spo SPBC19G7.06
GO:0005829	cytosol	C	IDA Spo SPBC19G7.06
GO:0003677	DNA binding	F	ISS Spo SPBC19G7.06 SPAC11E3.06 TAS Sce S000004645
GO:0003704	specific RNA polymerase II transcription factor activity	F	IDA Sce S000004645 NAS Spo SPBC19G7.06 SPAC11E3.06
GO:0008301	DNA bending activity	F	RCA Sce S000004645
GO:0006414	translational elongation	P	RCA Sce S000004645
GO:0006525	arginine metabolic process	P	TAS Sce S000004645
GO:0007532	regulation of transcription, mating-type specific	P	IMP Spo SPAC11E3.06
GO:0032569	gene-specific transcription from RNA polymerase II promoter	P	NAS Spo SPBC19G7.06 SPAC11E3.06
GO:0045896	regulation of transcription, mitotic	P	IMP Spo SPBC19G7.06
GO:0045944	positive regulation of transcription from RNA polymerase II promoter	P	IDA Sce S000004645
GO:0051049	regulation of transport	P	RCA Sce S000004645