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Search term: YMR049C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ERB1
SGD link S000004652
Alternative ID YMR049C
Description Constituent of 66S pre-ribosomal particles, forms a complex with Nop7p and Ytm1p that is required for maturation of the large ribosomal subunit; required for maturation of the 25S and 5.8S ribosomal RNAs; homologous to mammalian Bop1
Synonyms YMR049C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0650 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g40360 GI:15226662
Caenorhabditis elegans (Cel) CE22116
(WBGene00012978)		 GI:17537181 Q9U2A9
Drosophila melanogaster (Dme) 7302708
(FBgn0028744)		 GI:19922488
Homo sapiens (Hsa) Hs21327667 GI:20482760
Saccharomyces cerevisiae (Sce) YMR049c
(S000004652)		 GI:6323693 Q04660
Schizosaccharomyces pombe (Spo) SPBC4F6.13c GI:19112905 O74399
Encephalitozoon cuniculi (Ecu) ECU02g1070 GI:19074026 Q8SWB4
Arabidopsis thaliana (Ath) At2g40360 GI:15226662
Caenorhabditis elegans (Cel) CE22116
(WBGene00012978)		 GI:17537181 Q9U2A9
Drosophila melanogaster (Dme) 7302708
(FBgn0028744)		 GI:19922488
Homo sapiens (Hsa) Hs21327667 GI:20482760
Saccharomyces cerevisiae (Sce) YMR049c
(S000004652)		 GI:6323693 Q04660
Schizosaccharomyces pombe (Spo) SPBC4F6.13c GI:19112905 O74399
Encephalitozoon cuniculi (Ecu) ECU02g1070 GI:19074026 Q8SWB4


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004652
SpoSPBC4F6.13c
GO:0005730 nucleolus C
IDA
SceS000004652
SpoSPBC4F6.13c
ISS
DmeFBgn0028744
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000004652
GO:0043234 protein complex C
NAS
SpoSPBC4F6.13c
GO:0070545 PeBoW complex C
IDA
SceS000004652
IPI
SceS000004652
GO:0000166 nucleotide binding F
ISS
AthAt2g40360
GO:0003674 molecular_function F
ND
SceS000004652
SpoSPBC4F6.13c
GO:0043021 ribonucleoprotein binding F
ISS
DmeFBgn0028744
GO:0000003 reproduction P
IMP
CelWBGene00012978
GO:0002119 nematode larval development P
IMP
CelWBGene00012978
GO:0006364 rRNA processing P
IMP
SceS000004652
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00012978
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00012978
GO:0040007 growth P
IMP
CelWBGene00012978
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00012978
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00012978
GO:0042254 ribosome biogenesis P
ISS
DmeFBgn0028744
SpoSPBC4F6.13c
GO:0042273 ribosomal large subunit biogenesis P
IPI
SceS000004652
GO:0051049 regulation of transport P
RCA
SceS000004652

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6612

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) BOP1 GI:21327667
Homo sapiens (Hsa) LOC727967 GI:239743654
Mus musculus (Mmu) Bop1
(MGI:1334460)		 GI:7304931 P97452
Rattus norvegicus (Rno) Bop1
(RGD:1310589)		 GI:66730443
Gallus gallus (Gga) BOP1 GI:118117900
Drosophila melanogaster (Dme) CG5033
(FBgn0028744)		 GI:19922488
Anopheles gambiae (Aga) AgaP_AGAP007128 GI:158286228
Caenorhabditis elegans (Cel) Y48B6A.1
(CE22116;
WBGene00012978)		 GI:17537181 Q9U2A9
Schizosaccharomyces pombe (Spo) SPBC4F6.13c GI:19112905 O74399
Saccharomyces cerevisiae (Sce) ERB1
(S000004652)		 GI:6323693 Q04660
Kluyveromyces lactis (Kla) KLLA0F26653g GI:50312465
Eremothecium gossypii (Ego) AGOS_ABR101C GI:45185331
Magnaporthe grisea (Mgr) MGG_09313 GI:39959156
Neurospora crassa (Ncr) NCU03321.1 GI:32420627
Arabidopsis thaliana (Ath) AT2G40360 GI:42569798
Oryza sativa (Osa) Os07g0435400 GI:115471807
Plasmodium falciparum (Pfa) PF14_0055 GI:124808093


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
PfaPF14_0055
GO:0005634 nucleus C
IDA
SceS000004652
SpoSPBC4F6.13c
GO:0005730 nucleolus C
IDA
MmuMGI:1334460
SceS000004652
SpoSPBC4F6.13c
ISS
DmeFBgn0028744
GO:0030529 ribonucleoprotein complex C
IDA
HsaBOP1
ISO
MmuMGI:1334460
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000004652
GO:0043234 protein complex C
NAS
SpoSPBC4F6.13c
GO:0070545 PeBoW complex C
IDA
HsaBOP1
SceS000004652
IPI
SceS000004652
GO:0000166 nucleotide binding F
ISS
AthAt2g40360
GO:0003674 molecular_function F
ND
PfaPF14_0055
SceS000004652
SpoSPBC4F6.13c
GO:0005515 protein binding F
IPI
HsaBOP1
MmuMGI:1334460
GO:0043021 ribonucleoprotein binding F
IDA
MmuMGI:1334460
ISS
DmeFBgn0028744
GO:0000003 reproduction P
IMP
CelWBGene00012978
GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
MmuMGI:1334460
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
HsaBOP1
GO:0002119 nematode larval development P
IMP
CelWBGene00012978
GO:0006364 rRNA processing P
IMP
MmuMGI:1334460
SceS000004652
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00012978
GO:0008150 biological_process P
ND
PfaPF14_0055
GO:0008283 cell proliferation P
IMP
MmuMGI:1334460
NAS
HsaBOP1
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00012978
GO:0040007 growth P
IMP
CelWBGene00012978
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00012978
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00012978
GO:0042254 ribosome biogenesis P
IC
HsaBOP1
ISS
DmeFBgn0028744
SpoSPBC4F6.13c
NAS
HsaBOP1
GO:0042273 ribosomal large subunit biogenesis P
IMP
MmuMGI:1334460
IPI
SceS000004652
GO:0051049 regulation of transport P
RCA
SceS000004652
GO:0051726 regulation of cell cycle P
IMP
HsaBOP1

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2040

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga2584 ENSANGP00000007563
Ashbya gossypii (Ago) ago693 ABR101C
Arabidopsis thaliana (Ath) ath11172 At2g40360.1
Caenorhabditis elegans (Cel) cel19198 Y48B6A.1
(CE22116;
WBGene00012978)
Candida glabrata (Cgl) cgl4294 CAGL0L04950g
Cryptococcus neoformans (Cne) cne4982 186.m03894
Dictyostelium discoideum (Ddi) ddi6886 DDB0204239
Debaryomyces hansenii (Dha) dha3104 DEHA0D17919g
Drosophila melanogaster (Dme) dme5736 CG5033-PA
(FBgn0028744)
Drosophila melanogaster (Dme) dme5737 CG5033-PB
(FBgn0028744)
Danio rerio (Dre) dre3417 ENSDARP00000033480
Danio rerio (Dre) dre3416 ENSDARP00000041956
Takifugu rubripes (Fru) fru31233 SINFRUP00000138968
Takifugu rubripes (Fru) fru31234 SINFRUP00000144803
Takifugu rubripes (Fru) fru31235 SINFRUP00000166200
Takifugu rubripes (Fru) fru31232 SINFRUP00000167532
Homo sapiens (Hsa) hsa30885 ENSP00000304151
(BOP1)		 Q14137
Kluyveromyces lactis (Kla) kla5266 KLLA0F26653g
Mus musculus (Mmu) mmu9187 ENSMUSP00000023217
(MGI:1334460)		 P97452
Neurospora crassa (Ncr) ncr3218 NCU03321.2
Oryza sativa (Osa) osa3948 2075.m00140
Oryza sativa (Osa) osa34844 4718.m00141
Plasmodium falciparum (Pfa) pfa1311 PF14_0055
Rattus norvegicus (Rno) rno27291 ENSRNOP00000025133
(RGD:1310589)		 Q562C2
Saccharomyces cerevisiae (Sce) sce4800 YMR049C
(S000004652)
Schizosaccharomyces pombe (Spo) spo333 SPBC4F6.13c O74399
Yarrowia lipolytica (Yli) yli4947 YALI0E26389g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
PfaPF14_0055
GO:0005634 nucleus C
IDA
SceS000004652
SpoSPBC4F6.13c
GO:0005730 nucleolus C
IDA
MmuMGI:1334460
SceS000004652
SpoSPBC4F6.13c
ISS
DmeFBgn0028744
GO:0030529 ribonucleoprotein complex C
ISO
MmuMGI:1334460
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000004652
GO:0043234 protein complex C
NAS
SpoSPBC4F6.13c
GO:0070545 PeBoW complex C
IDA
SceS000004652
IPI
SceS000004652
GO:0000166 nucleotide binding F
ISS
AthAt2g40360
GO:0003674 molecular_function F
ND
PfaPF14_0055
SceS000004652
SpoSPBC4F6.13c
GO:0005515 protein binding F
IPI
MmuMGI:1334460
GO:0043021 ribonucleoprotein binding F
IDA
MmuMGI:1334460
ISS
DmeFBgn0028744
GO:0000003 reproduction P
IMP
CelWBGene00012978
GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
MmuMGI:1334460
GO:0002119 nematode larval development P
IMP
CelWBGene00012978
GO:0006364 rRNA processing P
IMP
MmuMGI:1334460
SceS000004652
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00012978
GO:0008150 biological_process P
ND
PfaPF14_0055
GO:0008283 cell proliferation P
IMP
MmuMGI:1334460
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00012978
GO:0040007 growth P
IMP
CelWBGene00012978
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00012978
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00012978
GO:0042254 ribosome biogenesis P
ISS
DmeFBgn0028744
SpoSPBC4F6.13c
GO:0042273 ribosomal large subunit biogenesis P
IMP
MmuMGI:1334460
IPI
SceS000004652
GO:0051049 regulation of transport P
RCA
SceS000004652

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC4F6.13c
(O74399)		 YMR049C
(S000004652)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004652
SpoSPBC4F6.13c
GO:0005730 nucleolus C
IDA
SceS000004652
SpoSPBC4F6.13c
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000004652
GO:0043234 protein complex C
NAS
SpoSPBC4F6.13c
GO:0070545 PeBoW complex C
IDA
SceS000004652
IPI
SceS000004652
GO:0003674 molecular_function F
ND
SceS000004652
SpoSPBC4F6.13c
GO:0006364 rRNA processing P
IMP
SceS000004652
GO:0042254 ribosome biogenesis P
ISS
SpoSPBC4F6.13c
GO:0042273 ribosomal large subunit biogenesis P
IPI
SceS000004652
GO:0051049 regulation of transport P
RCA
SceS000004652

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GO info in one table:

s.khadayate@ucl.ac.uk