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Search term: YMR061W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RNA14
SGD link S000004665
Alternative ID YMR061W
Description Cleavage and polyadenylation factor I (CF I) component involved in cleavage and polyadenylation of mRNA 3' ends; bridges interaction between Rna15p and Hrp1p in the CF I complex
Synonyms YMR061W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1914 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING mRNA cleavage and polyadenylation factor I complex, subunit RNA14

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g17760 GI:15220840
Caenorhabditis elegans (Cel) CE03277
(WBGene00006307)		 GI:17533541 Q19866
Drosophila melanogaster (Dme) 7288899 GI:135031
Homo sapiens (Hsa) Hs4557495
(CSTF3)		 GI:4557495 Q12996
Saccharomyces cerevisiae (Sce) YMR061w
(S000004665)		 GI:6323706 P25298
Schizosaccharomyces pombe (Spo) SPAC6F12.17 GI:19114215 O14233
Encephalitozoon cuniculi (Ecu) ECU02g0930 GI:19074012 Q8SWC5


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004665
SpoSPAC6F12.17
ISS
SpoSPAC6F12.17
GO:0005739 mitochondrion C
IDA
SceS000004665
ISS
SpoSPAC6F12.17
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
ISS
SpoSPAC6F12.17
RCA
SceS000004665
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000004665
ISS
SpoSPAC6F12.17
GO:0003674 molecular_function F
ND
SpoSPAC6F12.17
GO:0003723 RNA binding F
IDA
SceS000004665
TAS
HsaCSTF3
GO:0003729 mRNA binding F
IDA
AthAt1g17760
GO:0005515 protein binding F
IPI
AthAt1g17760
HsaCSTF3
GO:0016564 transcription repressor activity F
IMP
AthAt1g17760
GO:0046982 protein heterodimerization activity F
IPI
SceS000004665
GO:0000003 reproduction P
IMP
CelWBGene00006307
GO:0006378 mRNA polyadenylation P
IDA
SceS000004665
ISS
SpoSPAC6F12.17
TAS
HsaCSTF3
GO:0006379 mRNA cleavage P
IDA
SceS000004665
ISS
SpoSPAC6F12.17
TAS
HsaCSTF3
GO:0006397 mRNA processing P
ISS
AthAt1g17760
GO:0008380 RNA splicing P
EXP
HsaCSTF3
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00006307
GO:0031123 RNA 3'-end processing P
IMP
AthAt1g17760

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
1014

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) CSTF3 GI:4557495 Q12996
Pan troglodytes (Ptr) CSTF3 GI:114636834
Canis familiaris (Cfa) CSTF3 GI:73982208
Mus musculus (Mmu) Cstf3
(MGI:1351825)		 GI:21704042 Q3TXN6
Rattus norvegicus (Rno) Cstf3 GI:109468513
Gallus gallus (Gga) CSTF3 GI:60302784
Drosophila melanogaster (Dme) su(f) GI:62862186
Anopheles gambiae (Aga) AgaP_AGAP003019 GI:158290263
Caenorhabditis elegans (Cel) suf-1
(CE03277;
WBGene00006307)		 GI:17533541 Q19866
Schizosaccharomyces pombe (Spo) SPAC6F12.17 GI:19114215 O14233
Saccharomyces cerevisiae (Sce) RNA14
(S000004665)		 GI:6323706 P25298
Kluyveromyces lactis (Kla) KLLA0F26290g GI:50312435
Eremothecium gossypii (Ego) AGOS_ADR137W GI:45188010
Magnaporthe grisea (Mgr) MGG_03265 GI:145608240
Neurospora crassa (Ncr) NCU09435.1 GI:32423379
Arabidopsis thaliana (Ath) CSTF77 GI:22329636
Oryza sativa (Osa) Os12g0571900 GI:115489202


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1351825
GO:0005634 nucleus C
IDA
SceS000004665
SpoSPAC6F12.17
ISS
SpoSPAC6F12.17
NAS
Dmesu(f)
GO:0005739 mitochondrion C
IDA
SceS000004665
ISS
SpoSPAC6F12.17
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
ISS
Dmesu(f)
SpoSPAC6F12.17
RCA
SceS000004665
GO:0005848 mRNA cleavage stimulating factor
complex		 C
ISS
Dmesu(f)
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000004665
ISS
SpoSPAC6F12.17
GO:0003674 molecular_function F
ND
MmuMGI:1351825
SpoSPAC6F12.17
GO:0003723 RNA binding F
IDA
SceS000004665
TAS
HsaCSTF3
GO:0003729 mRNA binding F
IDA
AthCSTF77
GO:0005515 protein binding F
IPI
AthCSTF77
HsaCSTF3
GO:0016564 transcription repressor activity F
IMP
AthCSTF77
GO:0046982 protein heterodimerization activity F
IPI
SceS000004665
GO:0000003 reproduction P
IMP
CelWBGene00006307
GO:0006378 mRNA polyadenylation P
IDA
SceS000004665
ISS
SpoSPAC6F12.17
TAS
HsaCSTF3
GO:0006379 mRNA cleavage P
IDA
SceS000004665
ISS
Dmesu(f)
SpoSPAC6F12.17
TAS
HsaCSTF3
GO:0006397 mRNA processing P
ISS
AthCSTF77
GO:0008150 biological_process P
ND
MmuMGI:1351825
GO:0008380 RNA splicing P
EXP
HsaCSTF3
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00006307
GO:0016070 RNA metabolic process P
NAS
Dmesu(f)
GO:0031123 RNA 3'-end processing P
IMP
AthCSTF77

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2761

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5286 ENSANGP00000017604
Anopheles gambiae (Aga) aga5287 ENSANGP00000029672
Ashbya gossypii (Ago) ago1878 ADR137W
Arabidopsis thaliana (Ath) ath1902 At1g17760.1
Caenorhabditis elegans (Cel) cel7572 F28C6.6
(CE03277;
WBGene00006307)
Candida glabrata (Cgl) cgl1507 CAGL0F06479g
Cryptococcus neoformans (Cne) cne4806 186.m03680
Dictyostelium discoideum (Ddi) ddi7162 DDB0187069
Debaryomyces hansenii (Dha) dha5860 DEHA0G03718g
Drosophila melanogaster (Dme) dme15817 CG17170-PA
Drosophila melanogaster (Dme) dme15816 CG17170-PB
Drosophila melanogaster (Dme) dme15818 CG17170-PC
Danio rerio (Dre) dre24198 ENSDARP00000003969
(cstf3)		 Q7ZVG5
Encephalitozoon cuniculi (Ecu) ecu91 19074012
Takifugu rubripes (Fru) fru11967 SINFRUP00000128339
Takifugu rubripes (Fru) fru11968 SINFRUP00000176487
Gallus gallus (Gga) gga15170 ENSGALP00000019080
Gallus gallus (Gga) gga15171 ENSGALP00000019081
(CSTF3)		 Q5F4A0
Homo sapiens (Hsa) hsa5379 ENSP00000315791
(CSTF3)		 Q12996
Kluyveromyces lactis (Kla) kla5251 KLLA0F26290g
Mus musculus (Mmu) mmu15130 ENSMUSP00000028599
(MGI:1351825)		 Q99LI7
Neurospora crassa (Ncr) ncr9191 NCU09435.2
Oryza sativa (Osa) osa75932 7247.m00141
Rattus norvegicus (Rno) rno19298 ENSRNOP00000016318
(RGD:1305901)		 A0JPN7
Saccharomyces cerevisiae (Sce) sce4813 YMR061W
(S000004665)
Schizosaccharomyces pombe (Spo) spo3381 SPAC6F12.17 O14233
Yarrowia lipolytica (Yli) yli3482 YALI0D18612g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1351825
GO:0005634 nucleus C
IDA
SceS000004665
SpoSPAC6F12.17
ISS
SpoSPAC6F12.17
GO:0005739 mitochondrion C
IDA
SceS000004665
ISS
SpoSPAC6F12.17
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
ISS
SpoSPAC6F12.17
RCA
SceS000004665
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000004665
ISS
SpoSPAC6F12.17
GO:0003674 molecular_function F
ND
MmuMGI:1351825
SpoSPAC6F12.17
GO:0003723 RNA binding F
IDA
SceS000004665
GO:0003729 mRNA binding F
IDA
AthAt1g17760
GO:0005515 protein binding F
IPI
AthAt1g17760
GO:0016564 transcription repressor activity F
IMP
AthAt1g17760
GO:0046982 protein heterodimerization activity F
IPI
SceS000004665
GO:0000003 reproduction P
IMP
CelWBGene00006307
GO:0006378 mRNA polyadenylation P
IDA
SceS000004665
ISS
SpoSPAC6F12.17
GO:0006379 mRNA cleavage P
IDA
SceS000004665
ISS
SpoSPAC6F12.17
GO:0006397 mRNA processing P
ISS
AthAt1g17760
GO:0008150 biological_process P
ND
MmuMGI:1351825
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00006307
GO:0031123 RNA 3'-end processing P
IMP
AthAt1g17760

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC6F12.17
(O14233)		 YMR061W
(S000004665)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004665
SpoSPAC6F12.17
ISS
SpoSPAC6F12.17
GO:0005739 mitochondrion C
IDA
SceS000004665
ISS
SpoSPAC6F12.17
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
ISS
SpoSPAC6F12.17
RCA
SceS000004665
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000004665
ISS
SpoSPAC6F12.17
GO:0003674 molecular_function F
ND
SpoSPAC6F12.17
GO:0003723 RNA binding F
IDA
SceS000004665
GO:0046982 protein heterodimerization activity F
IPI
SceS000004665
GO:0006378 mRNA polyadenylation P
IDA
SceS000004665
ISS
SpoSPAC6F12.17
GO:0006379 mRNA cleavage P
IDA
SceS000004665
ISS
SpoSPAC6F12.17

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Search for gene by ID or name:

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GO info in one table:

s.khadayate@ucl.ac.uk