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Search term: YMR075W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RCO1
SGD link S000004680
Alternative ID YMR075W
Description Essential subunit of the histone deacetylase Rpd3S complex; interacts with Eaf3p
Synonyms YMR075W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4299 ACDHYP-

KOGs classification KOGs description
POORLY CHARACTERIZED PHD Zn-finger protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g19510_2 GI:15230408
Arabidopsis thaliana (Ath) At4g29940_1 GI:15233766
Caenorhabditis elegans (Cel) CE05406_1 GI:17552602
Drosophila melanogaster (Dme) 7290703_1 GI:7290703
Homo sapiens (Hsa) Hs22064454 GI:14278861 Q96QT6
Saccharomyces cerevisiae (Sce) YMR075w
(S000004680)		 GI:6323720 Q04779
Schizosaccharomyces pombe (Spo) SPAC16C9.05 GI:19113991 Q09819
Schizosaccharomyces pombe (Spo) SPAC2F7.07c GI:19113890 Q09698


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000118 histone deacetylase complex C
IDA
SceS000004680
GO:0005634 nucleus C
IDA
SceS000004680
SpoSPAC2F7.07c
SPAC16C9.05
ISS
AthAt4g29940
At3g19510
GO:0005819 spindle C
IDA
SpoSPAC2F7.07c
GO:0005829 cytosol C
IDA
SpoSPAC16C9.05
GO:0032221 Rpd3S complex C
IDA
SceS000004680
SpoSPAC2F7.07c
SPAC16C9.05
GO:0003677 DNA binding F
IDA
AthAt3g19510
GO:0003700 transcription factor activity F
ISS
AthAt4g29940
At3g19510
GO:0004407 histone deacetylase activity F
IDA
SceS000004680
GO:0005515 protein binding F
IPI
AthAt4g29940
GO:0016563 transcription activator activity F
IDA
AthAt4g29940
At3g19510
GO:0019787 small conjugating protein ligase
activity		 F
ISS
SpoSPAC16C9.05
SPAC2F7.07c
GO:0035064 methylated histone residue binding F
RCA
SceS000004680
GO:0042393 histone binding F
RCA
SceS000004680
GO:0043565 sequence-specific DNA binding F
IDA
AthAt4g29940
At3g19510
GO:0006338 chromatin remodeling P
IC
SpoSPAC2F7.07c
IPI
SpoSPAC16C9.05
GO:0006355 regulation of transcription, DNA-dependent P
ISS
AthAt4g29940
At3g19510
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IGI
SceS000004680
ISS
SpoSPAC16C9.05
GO:0009733 response to auxin stimulus P
IEP
AthAt4g29940
GO:0016575 histone deacetylation P
IMP
SceS000004680
ISS
SpoSPAC2F7.07c
SPAC16C9.05
GO:0030174 regulation of DNA-dependent DNA replication
initiation		 P
IMP
SceS000004680
GO:0045941 positive regulation of transcription P
IDA
AthAt4g29940
At3g19510

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39913

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPAC2F7.07c GI:19113890 Q09698
Saccharomyces cerevisiae (Sce) RCO1
(S000004680)		 GI:6323720 Q04779
Kluyveromyces lactis (Kla) KLLA0F25828g GI:50312393
Eremothecium gossypii (Ego) AGOS_AGL075C GI:45201021


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000118 histone deacetylase complex C
IDA
SceS000004680
GO:0005634 nucleus C
IDA
SceS000004680
SpoSPAC2F7.07c
GO:0005819 spindle C
IDA
SpoSPAC2F7.07c
GO:0032221 Rpd3S complex C
IDA
SceS000004680
SpoSPAC2F7.07c
GO:0004407 histone deacetylase activity F
IDA
SceS000004680
GO:0019787 small conjugating protein ligase
activity		 F
ISS
SpoSPAC2F7.07c
GO:0035064 methylated histone residue binding F
RCA
SceS000004680
GO:0042393 histone binding F
RCA
SceS000004680
GO:0006338 chromatin remodeling P
IC
SpoSPAC2F7.07c
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IGI
SceS000004680
GO:0016575 histone deacetylation P
IMP
SceS000004680
ISS
SpoSPAC2F7.07c
GO:0030174 regulation of DNA-dependent DNA replication
initiation		 P
IMP
SceS000004680

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3082

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5297 ENSANGP00000017544
Anopheles gambiae (Aga) aga5296 ENSANGP00000027775
Ashbya gossypii (Ago) ago4236 AGL075C
Arabidopsis thaliana (Ath) ath493 At1g05380.1
Caenorhabditis elegans (Cel) cel3989 C44B9.4
(CE30897;
WBGene00008081)
Candida glabrata (Cgl) cgl3059 CAGL0J01529g
Cryptococcus neoformans (Cne) cne4288 177.m03045
Debaryomyces hansenii (Dha) dha5302 DEHA0F20614g
Drosophila melanogaster (Dme) dme16709 CG3815-PA
(FBgn0029861)
Danio rerio (Dre) dre25271 ENSDARP00000015583
Danio rerio (Dre) dre6413 ENSDARP00000024786
Danio rerio (Dre) dre6444 ENSDARP00000050350
Takifugu rubripes (Fru) fru30608 SINFRUP00000130421
Gallus gallus (Gga) gga8903 ENSGALP00000006407
(PHF12)
Gallus gallus (Gga) gga26652 ENSGALP00000022042
Homo sapiens (Hsa) hsa13359 ENSP00000268756
(PHF12)		 Q96QT6-2
Homo sapiens (Hsa) hsa13358 ENSP00000329933
(PHF12)		 Q96QT6-1
Kluyveromyces lactis (Kla) kla5230 KLLA0F25828g
Mus musculus (Mmu) mmu4303 ENSMUSP00000044990
(MGI:1924057)		 Q5SPL2-1
Neurospora crassa (Ncr) ncr409 NCU00423.2
Rattus norvegicus (Rno) rno5599 ENSRNOP00000036982
(RGD:1305731)
Saccharomyces cerevisiae (Sce) sce4828 YMR075W
(S000004680)
Schizosaccharomyces pombe (Spo) spo2344 SPAC2F7.07c Q09698
Yarrowia lipolytica (Yli) yli4398 YALI0E12991g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000118 histone deacetylase complex C
IDA
SceS000004680
GO:0005575 cellular_component C
ND
MmuMGI:1924057
GO:0005634 nucleus C
IC
AthAt1g05380
IDA
SceS000004680
SpoSPAC2F7.07c
ISS
AthAt1g05380
GO:0005819 spindle C
IDA
SpoSPAC2F7.07c
GO:0032221 Rpd3S complex C
IDA
SceS000004680
SpoSPAC2F7.07c
GO:0003674 molecular_function F
ND
MmuMGI:1924057
GO:0003677 DNA binding F
ISS
AthAt1g05380
GO:0003700 transcription factor activity F
ISS
DmeFBgn0029861
GO:0004407 histone deacetylase activity F
IDA
SceS000004680
GO:0019787 small conjugating protein ligase
activity		 F
ISS
SpoSPAC2F7.07c
GO:0035064 methylated histone residue binding F
RCA
SceS000004680
GO:0042393 histone binding F
RCA
SceS000004680
GO:0000003 reproduction P
IMP
CelWBGene00008081
GO:0006338 chromatin remodeling P
IC
SpoSPAC2F7.07c
GO:0006355 regulation of transcription, DNA-dependent P
ISS
AthAt1g05380
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IGI
SceS000004680
GO:0008150 biological_process P
ND
MmuMGI:1924057
GO:0016575 histone deacetylation P
IMP
SceS000004680
ISS
SpoSPAC2F7.07c
GO:0030174 regulation of DNA-dependent DNA replication
initiation		 P
IMP
SceS000004680

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC2F7.07c
(Q09698)		 YMR075W
(S000004680)
SPAC16C9.05
(Q09819)		 YMR075W
(S000004680)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000118 histone deacetylase complex C
IDA
SceS000004680
GO:0005634 nucleus C
IDA
SceS000004680
SpoSPAC2F7.07c
SPAC16C9.05
GO:0005819 spindle C
IDA
SpoSPAC2F7.07c
GO:0005829 cytosol C
IDA
SpoSPAC16C9.05
GO:0032221 Rpd3S complex C
IDA
SceS000004680
SpoSPAC2F7.07c
SPAC16C9.05
GO:0004407 histone deacetylase activity F
IDA
SceS000004680
GO:0019787 small conjugating protein ligase
activity		 F
ISS
SpoSPAC16C9.05
SPAC2F7.07c
GO:0035064 methylated histone residue binding F
RCA
SceS000004680
GO:0042393 histone binding F
RCA
SceS000004680
GO:0006338 chromatin remodeling P
IC
SpoSPAC2F7.07c
IPI
SpoSPAC16C9.05
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IGI
SceS000004680
ISS
SpoSPAC16C9.05
GO:0016575 histone deacetylation P
IMP
SceS000004680
ISS
SpoSPAC2F7.07c
SPAC16C9.05
GO:0030174 regulation of DNA-dependent DNA replication
initiation		 P
IMP
SceS000004680

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