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Search term: YMR128W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ECM16
SGD link S000004735
Alternative ID YMR128W
Description Essential DEAH-box ATP-dependent RNA helicase specific to the U3 snoRNP, predominantly nucleolar in distribution, required for 18S rRNA synthesis
Synonyms YMR128W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0926 ACD-YP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSINGINFORMATION STORAGE AND PROCESSING DEAH-box RNA helicase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g33390 GI:15217524
Caenorhabditis elegans (Cel) CE29563
(WBGene00015525)
GI:17552054 P34305
Drosophila melanogaster (Dme) 7290296
(FBgn0001330)
GI:17136242
Saccharomyces cerevisiae (Sce) YMR128w
(S000004735)
GI:6323776 Q04217
Schizosaccharomyces pombe (Spo) SPAPB1A10.06c GI:19114432 Q9HDY4
Arabidopsis thaliana (Ath) At1g33390 GI:15217524
Caenorhabditis elegans (Cel) CE29563
(WBGene00015525)
GI:17552054 P34305
Drosophila melanogaster (Dme) 7290296
(FBgn0001330)
GI:17136242
Saccharomyces cerevisiae (Sce) YMR128w
(S000004735)
GI:6323776 Q04217
Schizosaccharomyces pombe (Spo) SPAPB1A10.06c GI:19114432 Q9HDY4


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g33390
GO:0005634 nucleus C
IDA
SpoSPAPB1A10.06c
ISS
DmeFBgn0001330
GO:0005730 nucleolus C
IDA
SceS000004735
SpoSPAPB1A10.06c
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPAPB1A10.06c
GO:0005739 mitochondrion C
IDA
SceS000004735
GO:0030686 90S preribosome C
IDA
SceS000004735
GO:0032040 small-subunit processome C
IDA
SceS000004735
GO:0003724 RNA helicase activity F
IDA
SceS000004735
ISS
SpoSPAPB1A10.06c
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPAPB1A10.06c
GO:0004386 helicase activity F
ISS
AthAt1g33390
DmeFBgn0001330
GO:0005524 ATP binding F
ISS
AthAt1g33390
SpoSPAPB1A10.06c
GO:0008026 ATP-dependent helicase activity F
ISS
DmeFBgn0001330
NAS
DmeFBgn0001330
GO:0016887 ATPase activity F
RCA
SceS000004735
GO:0042623 ATPase activity, coupled F
RCA
SceS000004735
GO:0000003 reproduction P
IMP
CelWBGene00015525
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004735
GO:0002119 nematode larval development P
IMP
CelWBGene00015525
GO:0006364 rRNA processing P
RCA
SceS000004735
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00015525
GO:0008150 biological_process P
ND
AthAt1g33390
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00015525
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00015525
GO:0016246 RNA interference P
IMP
CelWBGene00015525
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPAPB1A10.06c
GO:0040007 growth P
IMP
CelWBGene00015525
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00015525
GO:0042254 ribosome biogenesis P
IDA
SceS000004735
TAS
SceS000004735

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6641

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DHX37 GI:29029601
Canis familiaris (Cfa) DHX37 GI:73994380
Mus musculus (Mmu) Dhx37
(MGI:3028576)
GI:42600571 Q5DTX1
Rattus norvegicus (Rno) Dhx37 GI:109495853
Gallus gallus (Gga) DHX37 GI:118098459
Drosophila melanogaster (Dme) kz
(FBgn0001330)
GI:17136242
Anopheles gambiae (Aga) AgaP_AGAP002687 GI:158290654
Caenorhabditis elegans (Cel) rha-2
(CE29563;
WBGene00015525)
GI:17552054 P34305
Schizosaccharomyces pombe (Spo) SPAPB1A10.06c GI:19114432 Q9HDY4
Saccharomyces cerevisiae (Sce) ECM16
(S000004735)
GI:6323776 Q04217
Kluyveromyces lactis (Kla) KLLA0F17435g GI:50311673
Eremothecium gossypii (Ego) AGOS_AFR222W GI:45198740
Magnaporthe grisea (Mgr) MGG_04040 GI:39944058
Neurospora crassa (Ncr) NCU03808.1 GI:32404992
Arabidopsis thaliana (Ath) AT1G33390 GI:15217524
Oryza sativa (Osa) Os02g0736600 GI:115448551


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g33390
GO:0005634 nucleus C
IDA
SpoSPAPB1A10.06c
ISS
DmeFBgn0001330
GO:0005730 nucleolus C
IDA
SceS000004735
SpoSPAPB1A10.06c
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPAPB1A10.06c
GO:0005739 mitochondrion C
IDA
SceS000004735
GO:0030686 90S preribosome C
IDA
SceS000004735
GO:0032040 small-subunit processome C
IDA
SceS000004735
GO:0003724 RNA helicase activity F
IDA
SceS000004735
ISS
SpoSPAPB1A10.06c
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPAPB1A10.06c
GO:0004386 helicase activity F
ISS
AthAt1g33390
DmeFBgn0001330
GO:0005515 protein binding F
IPI
HsaDHX37
GO:0005524 ATP binding F
ISS
AthAt1g33390
SpoSPAPB1A10.06c
GO:0008026 ATP-dependent helicase activity F
ISS
DmeFBgn0001330
NAS
DmeFBgn0001330
GO:0016887 ATPase activity F
RCA
SceS000004735
GO:0042623 ATPase activity, coupled F
RCA
SceS000004735
GO:0000003 reproduction P
IMP
CelWBGene00015525
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004735
GO:0002119 nematode larval development P
IMP
CelWBGene00015525
GO:0006364 rRNA processing P
RCA
SceS000004735
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00015525
GO:0008150 biological_process P
ND
AthAt1g33390
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00015525
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00015525
GO:0016246 RNA interference P
IMP
CelWBGene00015525
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPAPB1A10.06c
GO:0040007 growth P
IMP
CelWBGene00015525
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00015525
GO:0042254 ribosome biogenesis P
IDA
SceS000004735
TAS
SceS000004735

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2024

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga4908 ENSANGP00000010281
Ashbya gossypii (Ago) ago3414 AFR222W
Arabidopsis thaliana (Ath) ath3491 At1g33390.1
Caenorhabditis elegans (Cel) cel1289 C06E1.10
(CE29563;
WBGene00015525)
Candida glabrata (Cgl) cgl3685 CAGL0K03795g
Cryptococcus neoformans (Cne) cne5789 179.m00663
Dictyostelium discoideum (Ddi) ddi8499 DDB0187437
Debaryomyces hansenii (Dha) dha6118 DEHA0G09427g
Drosophila melanogaster (Dme) dme16215 CG3228-PA
(FBgn0001330)
Danio rerio (Dre) dre28136 ENSDARP00000038203
Encephalitozoon cuniculi (Ecu) ecu593 19074677
Takifugu rubripes (Fru) fru10090 SINFRUP00000154962
Gallus gallus (Gga) gga7136 ENSGALP00000004679
(DHX37)
Gallus gallus (Gga) gga7137 ENSGALP00000004680
Gallus gallus (Gga) gga7138 ENSGALP00000004681
Homo sapiens (Hsa) hsa8436 ENSP00000311135
(DHX37)
Q8IY37
Kluyveromyces lactis (Kla) kla4863 KLLA0F17435g
Mus musculus (Mmu) mmu20972 ENSMUSP00000031443
(MGI:3028576)
Q6NZL1
Neurospora crassa (Ncr) ncr3698 NCU03808.2
Oryza sativa (Osa) osa7492 2519.m00088
Oryza sativa (Osa) osa29835 4290.m00212
Plasmodium falciparum (Pfa) pfa3880 MAL13P1.14
Rattus norvegicus (Rno) rno8496 ENSRNOP00000038631
(RGD:1306837)
Saccharomyces cerevisiae (Sce) sce4885 YMR128W
(S000004735)
Schizosaccharomyces pombe (Spo) spo905 SPAPB1A10.06c Q9HDY4
Yarrowia lipolytica (Yli) yli3827 YALI0D26620g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g33390
GO:0005634 nucleus C
IDA
SpoSPAPB1A10.06c
ISS
DmeFBgn0001330
GO:0005730 nucleolus C
IDA
SceS000004735
SpoSPAPB1A10.06c
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPAPB1A10.06c
GO:0005739 mitochondrion C
IDA
SceS000004735
GO:0030686 90S preribosome C
IDA
SceS000004735
GO:0032040 small-subunit processome C
IDA
SceS000004735
GO:0003724 RNA helicase activity F
IDA
SceS000004735
ISS
SpoSPAPB1A10.06c
GO:0004004 ATP-dependent RNA helicase activity F
ISS
PfaMAL13P1.14
SpoSPAPB1A10.06c
GO:0004386 helicase activity F
ISS
AthAt1g33390
DmeFBgn0001330
GO:0005524 ATP binding F
ISS
AthAt1g33390
SpoSPAPB1A10.06c
GO:0008026 ATP-dependent helicase activity F
ISS
DmeFBgn0001330
NAS
DmeFBgn0001330
GO:0016887 ATPase activity F
RCA
SceS000004735
GO:0042623 ATPase activity, coupled F
RCA
SceS000004735
GO:0000003 reproduction P
IMP
CelWBGene00015525
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004735
GO:0002119 nematode larval development P
IMP
CelWBGene00015525
GO:0006364 rRNA processing P
RCA
SceS000004735
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00015525
GO:0008150 biological_process P
ND
AthAt1g33390
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00015525
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00015525
GO:0016246 RNA interference P
IMP
CelWBGene00015525
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPAPB1A10.06c
GO:0040007 growth P
IMP
CelWBGene00015525
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00015525
GO:0042254 ribosome biogenesis P
IDA
SceS000004735
TAS
SceS000004735

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAPB1A10.06c
(Q9HDY4)
YMR128W
(S000004735)