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Search term: YMR131C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RRB1
SGD link S000004738
Alternative ID YMR131C
Description Essential nuclear protein involved in early steps of ribosome biogenesis; physically interacts with the ribosomal protein Rpl3p
Synonyms YMR131C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0302 ACDHYPE

KOGs classification KOGs description
POORLY CHARACTERIZED Ribosome Assembly protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g19540 GI:15224798
Caenorhabditis elegans (Cel) CE27292
(WBGene00021899)
GI:17556212 Q9N393
Drosophila melanogaster (Dme) 7302218 GI:7302218
Homo sapiens (Hsa) Hs13899346 GI:13899346
Saccharomyces cerevisiae (Sce) YMR131c
(S000004738)
GI:6323779 Q04225
Schizosaccharomyces pombe (Spo) SPBC1711.07 GI:19112672 Q9P783
Encephalitozoon cuniculi (Ecu) ECU05g1010 GI:19173641 Q8SRW1
Arabidopsis thaliana (Ath) At2g19540 GI:15224798
Caenorhabditis elegans (Cel) CE27292
(WBGene00021899)
GI:17556212 Q9N393
Drosophila melanogaster (Dme) 7302218 GI:7302218
Homo sapiens (Hsa) Hs13899346 GI:13899346
Saccharomyces cerevisiae (Sce) YMR131c
(S000004738)
GI:6323779 Q04225
Schizosaccharomyces pombe (Spo) SPBC1711.07 GI:19112672 Q9P783
Encephalitozoon cuniculi (Ecu) ECU05g1010 GI:19173641 Q8SRW1
Arabidopsis thaliana (Ath) At2g19540 GI:15224798
Caenorhabditis elegans (Cel) CE27292
(WBGene00021899)
GI:17556212 Q9N393
Drosophila melanogaster (Dme) 7302218 GI:7302218
Homo sapiens (Hsa) Hs13899346 GI:13899346
Saccharomyces cerevisiae (Sce) YMR131c
(S000004738)
GI:6323779 Q04225
Schizosaccharomyces pombe (Spo) SPBC1711.07 GI:19112672 Q9P783
Encephalitozoon cuniculi (Ecu) ECU05g1010 GI:19173641 Q8SRW1


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC1711.07
GO:0005730 nucleolus C
IDA
SceS000004738
ISS
SpoSPBC1711.07
GO:0005829 cytosol C
IDA
SpoSPBC1711.07
GO:0043234 protein complex C
NAS
SpoSPBC1711.07
GO:0080008 CUL4 RING ubiquitin ligase complex C
ISS
AthAt2g19540
GO:0000166 nucleotide binding F
ISS
AthAt2g19540
GO:0003674 molecular_function F
ND
SceS000004738
SpoSPBC1711.07
GO:0008150 biological_process P
ND
AthAt2g19540
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00021899
GO:0042254 ribosome biogenesis P
IMP
SceS000004738
IPI
SceS000004738
ISS
SpoSPBC1711.07

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6644

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) GRWD1 GI:31542862
Canis familiaris (Cfa) GRWD1 GI:73948053
Mus musculus (Mmu) Grwd1
(MGI:2141989)
GI:23956278 Q5XJZ3
Rattus norvegicus (Rno) Grwd1
(RGD:1310649)
GI:58865700
Drosophila melanogaster (Dme) l(2)09851
(FBgn0022288)
GI:28573273
Anopheles gambiae (Aga) AgaP_AGAP007125 GI:58376463
Caenorhabditis elegans (Cel) Y54H5A.1
(CE27292;
WBGene00021899)
GI:17556212 Q9N393
Schizosaccharomyces pombe (Spo) SPBC1711.07 GI:19112672 Q9P783
Saccharomyces cerevisiae (Sce) RRB1
(S000004738)
GI:6323779 Q04225
Kluyveromyces lactis (Kla) KLLA0F17237g GI:50311657
Eremothecium gossypii (Ego) AGOS_ADR242C GI:45188115
Magnaporthe grisea (Mgr) MGG_14350 GI:145601667
Neurospora crassa (Ncr) NCU09521.1 GI:32418804
Arabidopsis thaliana (Ath) AT2G19540 GI:15224798
Oryza sativa (Osa) Os11g0134500 GI:115484031
Plasmodium falciparum (Pfa) PF08_0065 GI:124512462


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2141989
GO:0005634 nucleus C
IDA
SpoSPBC1711.07
GO:0005730 nucleolus C
IDA
SceS000004738
ISS
SpoSPBC1711.07
GO:0005829 cytosol C
IDA
SpoSPBC1711.07
GO:0043234 protein complex C
NAS
SpoSPBC1711.07
GO:0080008 CUL4 RING ubiquitin ligase complex C
ISS
AthAt2g19540
GO:0000166 nucleotide binding F
ISS
AthAt2g19540
GO:0003674 molecular_function F
ND
MmuMGI:2141989
SceS000004738
SpoSPBC1711.07
GO:0008150 biological_process P
ND
AthAt2g19540
MmuMGI:2141989
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00021899
GO:0042254 ribosome biogenesis P
IMP
SceS000004738
IPI
SceS000004738
ISS
SpoSPBC1711.07

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2284

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga2580 ENSANGP00000011206
Ashbya gossypii (Ago) ago1983 ADR242C
Arabidopsis thaliana (Ath) ath8811 At2g19540.1
Caenorhabditis elegans (Cel) cel19856 Y54H5A.1
(CE27292;
WBGene00021899)
Candida glabrata (Cgl) cgl3688 CAGL0K03861g
Cryptococcus neoformans (Cne) cne5772 179.m00646
Dictyostelium discoideum (Ddi) ddi10247 DDB0183986
Debaryomyces hansenii (Dha) dha2555 DEHA0D05863g
Drosophila melanogaster (Dme) dme3396 CG12792-PA
(FBgn0022288)
Danio rerio (Dre) dre24206 ENSDARP00000023040
(zgc:92443)
Q6DBV2
Encephalitozoon cuniculi (Ecu) ecu1203 19173641
Takifugu rubripes (Fru) fru9815 SINFRUP00000129211
Homo sapiens (Hsa) hsa16744 ENSP00000253237
(GRWD1)
Q9BQ67
Kluyveromyces lactis (Kla) kla4855 KLLA0F17237g
Mus musculus (Mmu) mmu23986 ENSMUSP00000064460
(MGI:2141989)
Q810D6
Neurospora crassa (Ncr) ncr9269 NCU09521.2
Oryza sativa (Osa) osa1729 1893.m00178
Oryza sativa (Osa) osa60011 6553.m00177
Oryza sativa (Osa) osa64059 6635.m00188
Plasmodium falciparum (Pfa) pfa2159 PF08_0065
Rattus norvegicus (Rno) rno1891 ENSRNOP00000028594
(RGD:1310649)
Saccharomyces cerevisiae (Sce) sce4888 YMR131C
(S000004738)
Schizosaccharomyces pombe (Spo) spo680 SPBC1711.07 Q9P783
Yarrowia lipolytica (Yli) yli2372 YALI0C16203g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2141989
GO:0005634 nucleus C
IDA
SpoSPBC1711.07
GO:0005730 nucleolus C
IDA
SceS000004738
ISS
SpoSPBC1711.07
GO:0005829 cytosol C
IDA
SpoSPBC1711.07
GO:0043234 protein complex C
NAS
SpoSPBC1711.07
GO:0080008 CUL4 RING ubiquitin ligase complex C
ISS
AthAt2g19540
GO:0000166 nucleotide binding F
ISS
AthAt2g19540
GO:0003674 molecular_function F
ND
MmuMGI:2141989
SceS000004738
SpoSPBC1711.07
GO:0008150 biological_process P
ND
AthAt2g19540
MmuMGI:2141989
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00021899
GO:0042254 ribosome biogenesis P
IMP
SceS000004738
IPI
SceS000004738
ISS
SpoSPBC1711.07

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC1711.07
(Q9P783)
YMR131C
(S000004738)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC1711.07
GO:0005730 nucleolus C
IDA
SceS000004738
ISS
SpoSPBC1711.07
GO:0005829 cytosol C
IDA
SpoSPBC1711.07
GO:0043234 protein complex C
NAS
SpoSPBC1711.07
GO:0003674 molecular_function F
ND
SceS000004738
SpoSPBC1711.07
GO:0042254 ribosome biogenesis P
IMP
SceS000004738
IPI
SceS000004738
ISS
SpoSPBC1711.07

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Search for gene by ID or name:

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Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk