YOGY Home YOGY Help

Search term: YMR142C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPL13B
SGD link S000004750
Alternative ID YMR142C
Description Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Ap; not essential for viability; has similarity to rat L13 ribosomal protein
Synonyms YMR142C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3295 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING 60S Ribosomal protein L13

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g48130 GI:15228341
Arabidopsis thaliana (Ath) At3g48960 GI:15229059
Arabidopsis thaliana (Ath) At3g49010 GI:15229064
Arabidopsis thaliana (Ath) At5g23900 GI:15237847
Caenorhabditis elegans (Cel) CE08526
(WBGene00004425)
GI:17505793
Drosophila melanogaster (Dme) 7297588
(FBgn0011272)
GI:17647879 P41126
Homo sapiens (Hsa) Hs14784147 GI:14784147
Homo sapiens (Hsa) Hs15431295 GI:15431295 O60250
Homo sapiens (Hsa) Hs17466264 GI:17466264
Homo sapiens (Hsa) Hs20472151 GI:20472151
Homo sapiens (Hsa) Hs22045017 GI:22045017
Homo sapiens (Hsa) Hs22070432 GI:22070432
Saccharomyces cerevisiae (Sce) YDL082w
(S000002240)
GI:6320121 Q12690
Saccharomyces cerevisiae (Sce) YMR142c
(S000004750)
GI:6323791 P40212
Schizosaccharomyces pombe (Spo) SPAC664.05 GI:19114365 O74175
Encephalitozoon cuniculi (Ecu) ECU03g0320 GI:19172993 Q8SSC1


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005618 cell wall C
IDA
AthAt3g49010
GO:0005730 nucleolus C
IDA
AthAt3g49010
GO:0005811 lipid particle C
IDA
DmeFBgn0011272
GO:0005829 cytosol C
IDA
AthAt3g49010
SpoSPAC664.05
GO:0005840 ribosome C
ISS
AthAt3g49010
At3g48960
At5g23900
NAS
DmeFBgn0011272
TAS
AthAt3g49010
GO:0005886 plasma membrane C
IDA
AthAt3g49010
GO:0016020 membrane C
IDA
AthAt3g49010
At5g23900
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt3g49010
At5g23900
At3g48960
ISS
DmeFBgn0011272
SpoSPAC664.05
TAS
SceS000002240
S000004750
GO:0022626 cytosolic ribosome C
IDA
AthAt3g49010
At5g23900
GO:0003735 structural constituent of ribosome F
ISS
AthAt3g48960
At3g49010
At5g23900
DmeFBgn0011272
SpoSPAC664.05
NAS
DmeFBgn0011272
TAS
SceS000004750
S000002240
GO:0000003 reproduction P
IMP
CelWBGene00004425
GO:0000022 mitotic spindle elongation P
IMP
DmeFBgn0011272
GO:0002119 nematode larval development P
IMP
CelWBGene00004425
GO:0006412 translation P
ISS
AthAt3g48960
At3g49010
At5g23900
DmeFBgn0011272
SpoSPAC664.05
TAS
AthAt3g49010
SceS000002240
S000004750
GO:0006417 regulation of translation P
RCA
SceS000004750
S000002240
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0011272
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004425
GO:0040007 growth P
IMP
CelWBGene00004425
GO:0042254 ribosome biogenesis P
ISS
AthAt3g48960
At3g49010
At5g23900

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
5568

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RPL13 GI:15431297
Pan troglodytes (Ptr) RPL13 GI:114664156
Canis familiaris (Cfa) RPL13 GI:73956810
Mus musculus (Mmu) Gm9026 GI:94397192
Rattus norvegicus (Rno) Rpl13
(RGD:621179)
GI:13592055
Gallus gallus (Gga) RPL13 GI:45384528
Drosophila melanogaster (Dme) RpL13
(FBgn0011272)
GI:17647879 P41126
Anopheles gambiae (Aga) AgaP_AGAP001805 GI:58395449
Caenorhabditis elegans (Cel) rpl-13
(CE08526;
WBGene00004425)
GI:71981143
Schizosaccharomyces pombe (Spo) rpl13
(SPAC664.05)
GI:19114365 O74175
Saccharomyces cerevisiae (Sce) RPL13B
(S000004750)
GI:6323791 P40212
Saccharomyces cerevisiae (Sce) RPL13A
(S000002240)
GI:6320121 Q12690
Kluyveromyces lactis (Kla) KLLA0E22099g GI:50309867
Eremothecium gossypii (Ego) AGOS_ADR257C GI:45188130
Magnaporthe grisea (Mgr) MGG_13645 GI:145607984
Magnaporthe grisea (Mgr) MGG_09769 GI:145616633
Neurospora crassa (Ncr) NCU05554.1 GI:32409857
Arabidopsis thaliana (Ath) AT5G23900 GI:15237847
Arabidopsis thaliana (Ath) ATBBC1 GI:79314617
Oryza sativa (Osa) Os03g0576700 GI:115453873
Oryza sativa (Osa) Os06g0115500 GI:115466028
Plasmodium falciparum (Pfa) PF08_0075 GI:124512504


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005618 cell wall C
IDA
AthATBBC1
GO:0005730 nucleolus C
IDA
AthATBBC1
GO:0005811 lipid particle C
IDA
DmeFBgn0011272
GO:0005829 cytosol C
EXP
HsaRPL13
IDA
AthATBBC1
SpoSPAC664.05
GO:0005840 ribosome C
ISS
AthAt5g23900
ATBBC1
NAS
DmeFBgn0011272
TAS
AthATBBC1
GO:0005886 plasma membrane C
IDA
AthATBBC1
GO:0016020 membrane C
IDA
AthATBBC1
At5g23900
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt5g23900
ATBBC1
ISS
DmeFBgn0011272
PfaPF08_0075
SpoSPAC664.05
TAS
SceS000002240
S000004750
GO:0022626 cytosolic ribosome C
IDA
AthAt5g23900
ATBBC1
TAS
HsaRPL13
GO:0003723 RNA binding F
TAS
HsaRPL13
GO:0003735 structural constituent of ribosome F
ISS
AthAt5g23900
ATBBC1
DmeFBgn0011272
SpoSPAC664.05
NAS
DmeFBgn0011272
TAS
SceS000004750
S000002240
GO:0005515 protein binding F
IPI
HsaRPL13
GO:0000003 reproduction P
IMP
CelWBGene00004425
GO:0000022 mitotic spindle elongation P
IMP
DmeFBgn0011272
GO:0002119 nematode larval development P
IMP
CelWBGene00004425
GO:0006412 translation P
ISS
AthAt5g23900
ATBBC1
DmeFBgn0011272
SpoSPAC664.05
TAS
AthATBBC1
HsaRPL13
SceS000002240
S000004750
GO:0006414 translational elongation P
EXP
HsaRPL13
GO:0006417 regulation of translation P
RCA
SceS000004750
S000002240
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0011272
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004425
GO:0040007 growth P
IMP
CelWBGene00004425
GO:0042254 ribosome biogenesis P
ISS
AthAt5g23900
ATBBC1

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1161

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga3928 ENSANGP00000018501
Ashbya gossypii (Ago) ago1998 ADR257C
Arabidopsis thaliana (Ath) ath16209 At3g49010.1
Arabidopsis thaliana (Ath) ath16210 At3g49010.2
Arabidopsis thaliana (Ath) ath24644 At5g23900.1
Caenorhabditis elegans (Cel) cel3206 C32E8.2a
(CE08526;
WBGene00004425)
Candida glabrata (Cgl) cgl4380 CAGL0L06886g
Cryptococcus neoformans (Cne) cne1644 164.m02071
Dictyostelium discoideum (Ddi) ddi13592 DDB0229951
Debaryomyces hansenii (Dha) dha2707 DEHA0D09306g
Drosophila melanogaster (Dme) dme1694 CG4651-PA
(FBgn0011272)
Danio rerio (Dre) dre731 ENSDARP00000047390
(rpl13)
Q90Z10
Encephalitozoon cuniculi (Ecu) ecu400 19172993
Takifugu rubripes (Fru) fru11866 SINFRUP00000141578
Takifugu rubripes (Fru) fru11867 SINFRUP00000172418
Gallus gallus (Gga) gga4820 ENSGALP00000009960
(RPL13)
P41125
Homo sapiens (Hsa) hsa12690 ENSP00000307889
(RPL13)
P26373
Homo sapiens (Hsa) hsa13153 ENSP00000346623
Kluyveromyces lactis (Kla) kla3946 KLLA0E22099g
Mus musculus (Mmu) mmu26852 ENSMUSP00000000756
(MGI:105922)
P47963
Mus musculus (Mmu) mmu16654 ENSMUSP00000077227
Mus musculus (Mmu) mmu20375 ENSMUSP00000078575
Neurospora crassa (Ncr) ncr5396 NCU05554.2
Oryza sativa (Osa) osa5108 2346.m00146
Oryza sativa (Osa) osa14747 3018.m00167
Oryza sativa (Osa) osa67919 6897.m00134
Oryza sativa (Osa) osa85242 8373.m00144
Plasmodium falciparum (Pfa) pfa2169 PF08_0075
Rattus norvegicus (Rno) rno15159 ENSRNOP00000020635
(RGD:621179)
P41123
Rattus norvegicus (Rno) rno10444 ENSRNOP00000044180
Rattus norvegicus (Rno) rno10718 ENSRNOP00000047879
Saccharomyces cerevisiae (Sce) sce852 YDL082W
(S000002240)
Saccharomyces cerevisiae (Sce) sce4901 YMR142C
(S000004750)
Schizosaccharomyces pombe (Spo) spo3471 SPAC664.05 O74175
Yarrowia lipolytica (Yli) yli1269 YALI0B12826g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:105922
GO:0005618 cell wall C
IDA
AthAt3g49010
GO:0005730 nucleolus C
IDA
AthAt3g49010
GO:0005811 lipid particle C
IDA
DmeFBgn0011272
GO:0005829 cytosol C
IDA
AthAt3g49010
SpoSPAC664.05
GO:0005840 ribosome C
ISS
AthAt3g49010
At5g23900
NAS
DmeFBgn0011272
TAS
AthAt3g49010
GO:0005886 plasma membrane C
IDA
AthAt3g49010
GO:0016020 membrane C
IDA
AthAt3g49010
At5g23900
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt3g49010
At5g23900
ISS
DmeFBgn0011272
PfaPF08_0075
SpoSPAC664.05
TAS
SceS000002240
S000004750
GO:0022626 cytosolic ribosome C
IDA
AthAt3g49010
At5g23900
GO:0003674 molecular_function F
ND
MmuMGI:105922
GO:0003735 structural constituent of ribosome F
ISS
AthAt3g49010
At5g23900
DmeFBgn0011272
SpoSPAC664.05
NAS
DmeFBgn0011272
TAS
SceS000004750
S000002240
GO:0000003 reproduction P
IMP
CelWBGene00004425
GO:0000022 mitotic spindle elongation P
IMP
DmeFBgn0011272
GO:0002119 nematode larval development P
IMP
CelWBGene00004425
GO:0006412 translation P
ISS
AthAt3g49010
At5g23900
DmeFBgn0011272
SpoSPAC664.05
TAS
AthAt3g49010
SceS000002240
S000004750
GO:0006417 regulation of translation P
RCA
SceS000004750
S000002240
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0011272
GO:0008150 biological_process P
ND
MmuMGI:105922
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004425
GO:0040007 growth P
IMP
CelWBGene00004425
GO:0042254 ribosome biogenesis P
ISS
AthAt3g49010
At5g23900

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC664.05
(O74175)
YMR142C
(S000004750)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005829 cytosol C
IDA
SpoSPAC664.05
GO:0022625 cytosolic large ribosomal subunit C
ISS
SpoSPAC664.05
TAS
SceS000004750
GO:0003735 structural constituent of ribosome F
ISS
SpoSPAC664.05
TAS
SceS000004750
GO:0006412 translation P
ISS
SpoSPAC664.05
TAS
SceS000004750
GO:0006417 regulation of translation P
RCA
SceS000004750

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk