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Search term: YMR156C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TPP1
SGD link S000004765
Alternative ID YMR156C
Description DNA 3'-phosphatase that functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; has similarity to the l-2-haloacid dehalogenase superfamily
Synonyms YMR156C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2134 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Polynucleotide kinase 3' phosphatase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g14890_2 GI:15231946
Arabidopsis thaliana (Ath) At5g01310_2 GI:15240948
Caenorhabditis elegans (Cel) CE27135
(WBGene00009010)
GI:17539954 Q19683
Drosophila melanogaster (Dme) 7299027 GI:7299027
Homo sapiens (Hsa) Hs6005836 GI:6005836
Homo sapiens (Hsa) Hs22053078 GI:22053078
Saccharomyces cerevisiae (Sce) YMR156c
(S000004765)
GI:6323806 Q03796
Schizosaccharomyces pombe (Spo) SPAC23C11.04c GI:19114547 O13911
Encephalitozoon cuniculi (Ecu) ECU07g0160 GI:19074438 Q8SV48


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
SceS000004765
GO:0005634 nucleus C
IDA
SpoSPAC23C11.04c
GO:0005730 nucleolus C
IDA
SpoSPAC23C11.04c
GO:0003700 transcription factor activity F
ISS
AthAt5g01310
GO:0003824 catalytic activity F
ISS
AthAt3g14890
GO:0046403 polynucleotide 3'-phosphatase activity F
IDA
SceS000004765
SpoSPAC23C11.04c
TAS
SceS000004765
GO:0046404 ATP-dependent polydeoxyribonucleotide
5'-hydroxyl-kinase activity
F
IDA
SpoSPAC23C11.04c
GO:0047627 adenylylsulfatase activity F
IDA
AthAt5g01310
GO:0000718 nucleotide-excision repair, DNA damage
removal
P
IDA
SpoSPAC23C11.04c
GO:0002119 nematode larval development P
IMP
CelWBGene00009010
GO:0006281 DNA repair P
IDA
SceS000004765
IMP
SceS000004765
GO:0006790 sulfur metabolic process P
IDA
AthAt5g01310
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00009010
GO:0009150 purine ribonucleotide metabolic
process
P
IDA
AthAt5g01310
GO:0019915 lipid storage P
IMP
CelWBGene00009010
GO:0040007 growth P
IMP
CelWBGene00009010
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00009010
GO:0045449 regulation of transcription P
TAS
AthAt5g01310

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
48957

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) TPP1
(S000004765)
GI:6323806 Q03796
Kluyveromyces lactis (Kla) KLLA0E01386g GI:50308021


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
SceS000004765
GO:0046403 polynucleotide 3'-phosphatase activity F
IDA
SceS000004765
TAS
SceS000004765
GO:0006281 DNA repair P
IDA
SceS000004765
IMP
SceS000004765

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2225

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga9365 ENSANGP00000009138
Arabidopsis thaliana (Ath) ath13696 At3g14890.1
Arabidopsis thaliana (Ath) ath13697 At3g14890.2
Caenorhabditis elegans (Cel) cel6910 F21D5.5
(CE27135;
WBGene00009010)
Candida glabrata (Cgl) cgl5076 CAGL0M09636g
Cryptococcus neoformans (Cne) cne2488 181.m08529
Dictyostelium discoideum (Ddi) ddi6782 DDB0204927
Dictyostelium discoideum (Ddi) ddi12543 DDB0220676
Debaryomyces hansenii (Dha) dha1012 DEHA0B07469g
Drosophila melanogaster (Dme) dme11506 CG9601-PA
(FBgn0037578)
Danio rerio (Dre) dre5585 ENSDARP00000010492
Danio rerio (Dre) dre5587 ENSDARP00000028631
Danio rerio (Dre) dre5586 ENSDARP00000048461
Encephalitozoon cuniculi (Ecu) ecu1824 19074438
Takifugu rubripes (Fru) fru16653 SINFRUP00000162379
Homo sapiens (Hsa) hsa16854 ENSP00000323511
(PNKP)
Q96T60
Kluyveromyces lactis (Kla) kla3010 KLLA0E01386g
Mus musculus (Mmu) mmu23904 ENSMUSP00000003044
(MGI:1891698)
Q9JLV6-1
Neurospora crassa (Ncr) ncr7943 NCU08151.2
Oryza sativa (Osa) osa42231 5147.m00122
Plasmodium falciparum (Pfa) pfa4440 PF13_0334
Rattus norvegicus (Rno) rno1798 ENSRNOP00000027531
(RGD:1303331)
Rattus norvegicus (Rno) rno1797 ENSRNOP00000039388
(RGD:1303331)
Q6AXV0
Saccharomyces cerevisiae (Sce) sce4916 YMR156C
(S000004765)
Schizosaccharomyces pombe (Spo) spo2381 SPAC23C11.04c O13911
Yarrowia lipolytica (Yli) yli5060 YALI0E29051g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1891698
SceS000004765
GO:0005634 nucleus C
IDA
SpoSPAC23C11.04c
GO:0005730 nucleolus C
IDA
SpoSPAC23C11.04c
GO:0003674 molecular_function F
ND
MmuMGI:1891698
GO:0003684 damaged DNA binding F
ISS
PfaPF13_0334
GO:0003824 catalytic activity F
ISS
AthAt3g14890
GO:0046403 polynucleotide 3'-phosphatase activity F
IDA
SceS000004765
SpoSPAC23C11.04c
TAS
SceS000004765
GO:0046404 ATP-dependent polydeoxyribonucleotide
5'-hydroxyl-kinase activity
F
IDA
SpoSPAC23C11.04c
GO:0000718 nucleotide-excision repair, DNA damage
removal
P
IDA
SpoSPAC23C11.04c
GO:0002119 nematode larval development P
IMP
CelWBGene00009010
GO:0006281 DNA repair P
IDA
SceS000004765
IMP
SceS000004765
GO:0006974 response to DNA damage stimulus P
ISS
PfaPF13_0334
GO:0008150 biological_process P
ND
MmuMGI:1891698
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00009010
GO:0019915 lipid storage P
IMP
CelWBGene00009010
GO:0040007 growth P
IMP
CelWBGene00009010
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00009010

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC23C11.04c
(O13911)
YMR156C
(S000004765)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
SceS000004765
GO:0005634 nucleus C
IDA
SpoSPAC23C11.04c
GO:0005730 nucleolus C
IDA
SpoSPAC23C11.04c
GO:0046403 polynucleotide 3'-phosphatase activity F
IDA
SceS000004765
SpoSPAC23C11.04c
TAS
SceS000004765
GO:0046404 ATP-dependent polydeoxyribonucleotide
5'-hydroxyl-kinase activity
F
IDA
SpoSPAC23C11.04c
GO:0000718 nucleotide-excision repair, DNA damage
removal
P
IDA
SpoSPAC23C11.04c
GO:0006281 DNA repair P
IDA
SceS000004765
IMP
SceS000004765

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Search for GO info:  

GO info in one table:

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