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Search term: YMR176W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ECM5
SGD link S000004788
Alternative ID YMR176W
Description Non-essential protein of unknown function, contains ATP/GTP-binding site motif A; null mutant exhibits cellular volume up to four times greater than wild-type, also large drooping buds with elongated necks
Synonyms YMR176W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1246 ACDHYP-

KOGs classification KOGs description
POORLY CHARACTERIZED DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g08620 GI:15223267
Arabidopsis thaliana (Ath) At1g30810 GI:15221504
Arabidopsis thaliana (Ath) At1g63490 GI:15222444
Arabidopsis thaliana (Ath) At2g34880 GI:15226853
Arabidopsis thaliana (Ath) At2g38950 GI:15224986
Arabidopsis thaliana (Ath) At4g20400 GI:15237071
Arabidopsis thaliana (Ath) At5g04240_1 GI:15237652
Arabidopsis thaliana (Ath) At5g46910 GI:15237976
Caenorhabditis elegans (Cel) CE01878_2 GI:17551312 Q09519
Caenorhabditis elegans (Cel) CE02662 GI:17567113
Caenorhabditis elegans (Cel) CE06625 GI:17544590
Caenorhabditis elegans (Cel) CE08447
(WBGene00007813)		 GI:17550694 O17619
Caenorhabditis elegans (Cel) CE15893
(WBGene00009089)		 GI:17567315 Q19760
Caenorhabditis elegans (Cel) CE27979 GI:17567111
Drosophila melanogaster (Dme) 7297050
(FBgn0031759)		 GI:17647589 Q9VMJ7
Homo sapiens (Hsa) Hs10863943_2 GI:10863943
Homo sapiens (Hsa) Hs11321605 GI:11321605
Homo sapiens (Hsa) Hs11863152
(JARID2)		 GI:11863152 Q96PA1
Homo sapiens (Hsa) Hs19923370 GI:19923370
Homo sapiens (Hsa) Hs19923385_2 GI:19923385
Homo sapiens (Hsa) Hs20477063 GI:20477063
Homo sapiens (Hsa) Hs20547881 GI:20547881
Homo sapiens (Hsa) Hs22056974_2 GI:22056974
Homo sapiens (Hsa) Hs22065716_2 GI:22065716
Homo sapiens (Hsa) Hs4759150 GI:4759150
Homo sapiens (Hsa) Hs4826968 GI:4826968
Saccharomyces cerevisiae (Sce) YJR119c
(S000003880)		 GI:6322579 P47156
Saccharomyces cerevisiae (Sce) YMR176w
(S000004788)		 GI:6323830 Q03214
Schizosaccharomyces pombe (Spo) SPAC1002.05c GI:19114404 Q9US53
Schizosaccharomyces pombe (Spo) SPAC343.11c GI:19114343 Q9UT79
Schizosaccharomyces pombe (Spo) SPBP19A11.06 GI:19112966 Q9HDV4
Arabidopsis thaliana (Ath) At1g08620 GI:15223267
Arabidopsis thaliana (Ath) At1g30810 GI:15221504
Arabidopsis thaliana (Ath) At1g63490 GI:15222444
Arabidopsis thaliana (Ath) At2g34880 GI:15226853
Arabidopsis thaliana (Ath) At2g38950 GI:15224986
Arabidopsis thaliana (Ath) At4g20400 GI:15237071
Arabidopsis thaliana (Ath) At5g04240_1 GI:15237652
Arabidopsis thaliana (Ath) At5g46910 GI:15237976
Caenorhabditis elegans (Cel) CE01878_2 GI:17551312 Q09519
Caenorhabditis elegans (Cel) CE02662 GI:17567113
Caenorhabditis elegans (Cel) CE06625 GI:17544590
Caenorhabditis elegans (Cel) CE08447
(WBGene00007813)		 GI:17550694 O17619
Caenorhabditis elegans (Cel) CE15893
(WBGene00009089)		 GI:17567315 Q19760
Caenorhabditis elegans (Cel) CE27979 GI:17567111
Drosophila melanogaster (Dme) 7297050
(FBgn0031759)		 GI:17647589 Q9VMJ7
Homo sapiens (Hsa) Hs10863943_2 GI:10863943
Homo sapiens (Hsa) Hs11321605 GI:11321605
Homo sapiens (Hsa) Hs11863152
(JARID2)		 GI:11863152 Q96PA1
Homo sapiens (Hsa) Hs19923370 GI:19923370
Homo sapiens (Hsa) Hs19923385_2 GI:19923385
Homo sapiens (Hsa) Hs20477063 GI:20477063
Homo sapiens (Hsa) Hs20547881 GI:20547881
Homo sapiens (Hsa) Hs22056974_2 GI:22056974
Homo sapiens (Hsa) Hs22065716_2 GI:22065716
Homo sapiens (Hsa) Hs4759150 GI:4759150
Homo sapiens (Hsa) Hs4826968 GI:4826968
Saccharomyces cerevisiae (Sce) YJR119c
(S000003880)		 GI:6322579 P47156
Saccharomyces cerevisiae (Sce) YMR176w
(S000004788)		 GI:6323830 Q03214
Schizosaccharomyces pombe (Spo) SPAC1002.05c GI:19114404 Q9US53
Schizosaccharomyces pombe (Spo) SPAC343.11c GI:19114343 Q9UT79
Schizosaccharomyces pombe (Spo) SPBP19A11.06 GI:19112966 Q9HDV4


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000118 histone deacetylase complex C
IDA
SpoSPAC343.11c
GO:0000790 nuclear chromatin C
IDA
SpoSPAC343.11c
ISS
SpoSPBP19A11.06
SPAC1002.05c
GO:0000812 Swr1 complex C
IDA
SpoSPAC343.11c
GO:0005634 nucleus C
IDA
AthAt5g04240
HsaJARID2
SceS000003880
S000004788
SpoSPBP19A11.06
SPAC1002.05c
GO:0005654 nucleoplasm C
RCA
SceS000003880
GO:0005737 cytoplasm C
IDA
SceS000003880
GO:0035097 histone methyltransferase complex C
ISS
HsaJARID2
GO:0035098 ESC/E(Z) complex C
IDA
HsaJARID2
GO:0044451 nucleoplasm part C
RCA
SceS000003880
GO:0048189 Lid2 complex C
IDA
SpoSPBP19A11.06
GO:0070211 Snt2C complex C
IDA
SceS000004788
GO:0003674 molecular_function F
ND
SceS000004788
GO:0003677 DNA binding F
ISS
SpoSPBP19A11.06
SPAC1002.05c
GO:0003682 chromatin binding F
ISS
HsaJARID2
GO:0003700 transcription factor activity F
ISS
AthAt5g04240
At1g30810
At1g63490
At2g38950
At5g46910
At1g08620
At2g34880
GO:0005515 protein binding F
IPI
DmeFBgn0031759
SpoSPAC343.11c
GO:0008270 zinc ion binding F
ISS
SpoSPAC1002.05c
GO:0019787 small conjugating protein ligase
activity		 F
ISS
SpoSPBP19A11.06
SPAC343.11c
GO:0032452 histone demethylase activity F
IDA
SpoSPAC1002.05c
ISS
SpoSPAC343.11c
SPBP19A11.06
GO:0032453 histone demethylase activity (H3-K4
specific)		 F
IDA
SceS000003880
IMP
DmeFBgn0031759
SceS000003880
GO:0034647 histone demethylase activity (H3-trimethyl-K4
specific)		 F
IDA
SpoSPAC1002.05c
IMP
DmeFBgn0031759
SpoSPAC1002.05c
GO:0034648 histone demethylase activity (H3-dimethyl-K4
specific)		 F
IDA
SpoSPAC1002.05c
GO:0042393 histone binding F
RCA
SceS000003880
GO:0043992 histone acetyltransferase activity (H3-K9
specific)		 F
IMP
DmeFBgn0031759
GO:0051864 histone demethylase activity (H3-K36
specific)		 F
ISS
SpoSPAC1002.05c
GO:0000003 reproduction P
IMP
CelWBGene00017046
GO:0006338 chromatin remodeling P
IC
SpoSPBP19A11.06
IMP
SpoSPAC1002.05c
IPI
SpoSPAC343.11c
GO:0006355 regulation of transcription, DNA-dependent P
IC
SpoSPBP19A11.06
ISS
SpoSPAC343.11c
GO:0006974 response to DNA damage stimulus P
IGI
SpoSPAC343.11c
GO:0007126 meiosis P
IEP
SpoSPAC343.11c
IMP
SpoSPAC343.11c
GO:0007417 central nervous system development P
TAS
HsaJARID2
GO:0009555 pollen development P
IMP
AthAt2g34880
GO:0009741 response to brassinosteroid stimulus P
IMP
AthAt5g04240
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00017046
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthAt2g34880
GO:0009826 unidimensional cell growth P
IMP
AthAt5g04240
GO:0010200 response to chitin P
IEP
AthAt5g46910
GO:0010551 regulation of gene-specific transcription from RNA
polymerase II promoter		 P
IEP
SpoSPAC1002.05c
GO:0010553 negative regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IMP
SpoSPAC1002.05c
GO:0016568 chromatin modification P
TAS
SpoSPAC343.11c
GO:0016573 histone acetylation P
IMP
SpoSPAC343.11c
GO:0016577 histone demethylation P
IDA
SceS000003880
SpoSPAC1002.05c
IMP
SceS000003880
ISS
SpoSPBP19A11.06
SPAC343.11c
GO:0031061 negative regulation of histone
methylation		 P
ISS
HsaJARID2
GO:0031505 fungal-type cell wall organization P
IMP
SceS000004788
GO:0033169 histone H3-K9 demethylation P
IMP
AthAt5g04240
GO:0034720 histone H3-K4 demethylation P
IMP
DmeFBgn0031759
GO:0034721 histone H3-K4 demethylation, trimethyl-H3-K4-specific P
IDA
SpoSPAC1002.05c
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00017046
GO:0040011 locomotion P
IMP
CelWBGene00017046
GO:0040018 positive regulation of multicellular organism
growth		 P
IMP
CelWBGene00017046
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00017046
GO:0043486 histone exchange P
IPI
SpoSPAC343.11c
GO:0043970 histone H3-K9 acetylation P
IMP
DmeFBgn0031759
GO:0045449 regulation of transcription P
TAS
AthAt1g08620
At2g38950
At5g04240
At5g46910
At2g34880
At1g30810
GO:0045892 negative regulation of transcription,
DNA-dependent		 P
ISS
HsaJARID2
GO:0048577 negative regulation of short-day photoperiodism,
flowering		 P
IMP
AthAt5g04240
GO:0048579 negative regulation of long-day photoperiodism,
flowering		 P
IMP
AthAt5g04240
GO:0048863 stem cell differentiation P
ISS
HsaJARID2
GO:0051574 positive regulation of histone H3-K9
methylation		 P
ISS
HsaJARID2
GO:0070544 histone H3-K36 demethylation P
ISS
SpoSPAC1002.05c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39954

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) ECM5
(S000004788)		 GI:6323830 Q03214
Kluyveromyces lactis (Kla) KLLA0C16203g GI:50305927
Eremothecium gossypii (Ego) AGOS_AFL127C GI:45198394


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004788
GO:0070211 Snt2C complex C
IDA
SceS000004788
GO:0003674 molecular_function F
ND
SceS000004788
GO:0031505 fungal-type cell wall organization P
IMP
SceS000004788

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_17626

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago3068 AFL127C
Debaryomyces hansenii (Dha) dha2429 DEHA0D03003g
Kluyveromyces lactis (Kla) kla1923 KLLA0C16203g
Saccharomyces cerevisiae (Sce) sce4941 YMR176W
(S000004788)
Schizosaccharomyces pombe (Spo) spo2062 SPAC343.11c Q9UT79
Schizosaccharomyces pombe (Spo) spo1518 SPBP19A11.06 Q9HDV4
Yarrowia lipolytica (Yli) yli2381 YALI0C16390g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000118 histone deacetylase complex C
IDA
SpoSPAC343.11c
GO:0000790 nuclear chromatin C
IDA
SpoSPAC343.11c
ISS
SpoSPBP19A11.06
GO:0000812 Swr1 complex C
IDA
SpoSPAC343.11c
GO:0005634 nucleus C
IDA
SceS000004788
SpoSPBP19A11.06
GO:0048189 Lid2 complex C
IDA
SpoSPBP19A11.06
GO:0070211 Snt2C complex C
IDA
SceS000004788
GO:0003674 molecular_function F
ND
SceS000004788
GO:0003677 DNA binding F
ISS
SpoSPBP19A11.06
GO:0005515 protein binding F
IPI
SpoSPAC343.11c
GO:0019787 small conjugating protein ligase
activity		 F
ISS
SpoSPBP19A11.06
SPAC343.11c
GO:0032452 histone demethylase activity F
ISS
SpoSPAC343.11c
SPBP19A11.06
GO:0006338 chromatin remodeling P
IC
SpoSPBP19A11.06
IPI
SpoSPAC343.11c
GO:0006355 regulation of transcription, DNA-dependent P
IC
SpoSPBP19A11.06
ISS
SpoSPAC343.11c
GO:0006974 response to DNA damage stimulus P
IGI
SpoSPAC343.11c
GO:0007126 meiosis P
IEP
SpoSPAC343.11c
IMP
SpoSPAC343.11c
GO:0016568 chromatin modification P
TAS
SpoSPAC343.11c
GO:0016573 histone acetylation P
IMP
SpoSPAC343.11c
GO:0016577 histone demethylation P
ISS
SpoSPBP19A11.06
SPAC343.11c
GO:0031505 fungal-type cell wall organization P
IMP
SceS000004788
GO:0043486 histone exchange P
IPI
SpoSPAC343.11c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC1002.05c
(Q9US53)		 YMR176W
(S000004788)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
ISS
SpoSPAC1002.05c
GO:0005634 nucleus C
IDA
SceS000004788
SpoSPAC1002.05c
GO:0070211 Snt2C complex C
IDA
SceS000004788
GO:0003674 molecular_function F
ND
SceS000004788
GO:0003677 DNA binding F
ISS
SpoSPAC1002.05c
GO:0008270 zinc ion binding F
ISS
SpoSPAC1002.05c
GO:0032452 histone demethylase activity F
IDA
SpoSPAC1002.05c
GO:0034647 histone demethylase activity (H3-trimethyl-K4
specific)		 F
IDA
SpoSPAC1002.05c
IMP
SpoSPAC1002.05c
GO:0034648 histone demethylase activity (H3-dimethyl-K4
specific)		 F
IDA
SpoSPAC1002.05c
GO:0051864 histone demethylase activity (H3-K36
specific)		 F
ISS
SpoSPAC1002.05c
GO:0006338 chromatin remodeling P
IMP
SpoSPAC1002.05c
GO:0010551 regulation of gene-specific transcription from RNA
polymerase II promoter		 P
IEP
SpoSPAC1002.05c
GO:0010553 negative regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IMP
SpoSPAC1002.05c
GO:0016577 histone demethylation P
IDA
SpoSPAC1002.05c
GO:0031505 fungal-type cell wall organization P
IMP
SceS000004788
GO:0034721 histone H3-K4 demethylation, trimethyl-H3-K4-specific P
IDA
SpoSPAC1002.05c
GO:0070544 histone H3-K36 demethylation P
ISS
SpoSPAC1002.05c

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