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Search term: YMR213W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CEF1
SGD link S000004826
Alternative ID YMR213W
Description Essential splicing factor; associated with Prp19p and the spliceosome, contains an N-terminal c-Myb DNA binding motif necessary for cell viability but not for Prp19p association, evolutionarily conserved and homologous to S. pombe Cdc5p
Synonyms YMR213W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0050 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSINGCELLULAR PROCESSES AND SIGNALING mRNA splicing protein CDC5 (Myb superfamily)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g09770 GI:15218276
Caenorhabditis elegans (Cel) CE05540
(WBGene00008386)		 GI:17506363 Q21119
Drosophila melanogaster (Dme) 7291967 GI:7291967
Homo sapiens (Hsa) Hs11067747
(CDC5L)		 GI:11067747 Q99459
Saccharomyces cerevisiae (Sce) YMR213w
(S000004826)		 GI:6323869 Q03654
Schizosaccharomyces pombe (Spo) SPAC644.12 GI:19114792 P39964
Encephalitozoon cuniculi (Ecu) ECU01g1140 GI:19075127
Encephalitozoon cuniculi (Ecu) ECU02g0420 GI:19073963 Q8SWE8
Arabidopsis thaliana (Ath) At1g09770 GI:15218276
Caenorhabditis elegans (Cel) CE05540
(WBGene00008386)		 GI:17506363 Q21119
Drosophila melanogaster (Dme) 7291967 GI:7291967
Homo sapiens (Hsa) Hs11067747
(CDC5L)		 GI:11067747 Q99459
Saccharomyces cerevisiae (Sce) YMR213w
(S000004826)		 GI:6323869 Q03654
Schizosaccharomyces pombe (Spo) SPAC644.12 GI:19114792 P39964
Encephalitozoon cuniculi (Ecu) ECU01g1140 GI:19075127
Encephalitozoon cuniculi (Ecu) ECU02g0420 GI:19073963 Q8SWE8
Arabidopsis thaliana (Ath) At1g09770 GI:15218276
Caenorhabditis elegans (Cel) CE05540
(WBGene00008386)		 GI:17506363 Q21119
Drosophila melanogaster (Dme) 7291967 GI:7291967
Homo sapiens (Hsa) Hs11067747
(CDC5L)		 GI:11067747 Q99459
Saccharomyces cerevisiae (Sce) YMR213w
(S000004826)		 GI:6323869 Q03654
Schizosaccharomyces pombe (Spo) SPAC644.12 GI:19114792 P39964
Encephalitozoon cuniculi (Ecu) ECU01g1140 GI:19075127
Encephalitozoon cuniculi (Ecu) ECU02g0420 GI:19073963 Q8SWE8


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000974 Prp19 complex C
IDA
SceS000004826
GO:0005634 nucleus C
IDA
HsaCDC5L
SpoSPAC644.12
NAS
HsaCDC5L
GO:0005681 spliceosomal complex C
IDA
SpoSPAC644.12
GO:0005730 nucleolus C
IDA
HsaCDC5L
GO:0009507 chloroplast C
IDA
AthAt1g09770
GO:0016607 nuclear speck C
IDA
HsaCDC5L
GO:0071006 U2-type catalytic step 1 spliceosome C
IDA
SceS000004826
GO:0000384 first spliceosomal transesterification
activity		 F
IC
SceS000004826
GO:0003677 DNA binding F
ISS
AthAt1g09770
NAS
HsaCDC5L
GO:0003700 transcription factor activity F
ISS
AthAt1g09770
GO:0005515 protein binding F
IPI
HsaCDC5L
SpoSPAC644.12
GO:0000003 reproduction P
IMP
CelWBGene00008386
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000004826
SpoSPAC644.12
GO:0000910 cytokinesis P
IMP
CelWBGene00008386
GO:0001703 gastrulation with mouth forming
first		 P
IMP
CelWBGene00008386
GO:0002119 nematode larval development P
IMP
CelWBGene00008386
GO:0006355 regulation of transcription, DNA-dependent P
NAS
HsaCDC5L
GO:0006974 response to DNA damage stimulus P
IMP
CelWBGene00008386
GO:0007369 gastrulation P
IMP
CelWBGene00008386
GO:0009790 embryo development P
IMP
CelWBGene00008386
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00008386
GO:0009870 defense response signaling pathway, resistance
gene-dependent		 P
IMP
AthAt1g09770
GO:0010204 defense response signaling pathway, resistance
gene-independent		 P
IMP
AthAt1g09770
GO:0010389 regulation of G2/M transition of mitotic cell
cycle		 P
IMP
SpoSPAC644.12
GO:0016071 mRNA metabolic process P
RCA
SceS000004826
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00008386
GO:0040007 growth P
IMP
CelWBGene00008386
GO:0042742 defense response to bacterium P
IMP
AthAt1g09770
GO:0045449 regulation of transcription P
TAS
AthAt1g09770
GO:0050832 defense response to fungus P
IMP
AthAt1g09770
GO:0051301 cell division P
IMP
CelWBGene00008386

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39971

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) CEF1
(S000004826)		 GI:6323869 Q03654
Kluyveromyces lactis (Kla) KLLA0C07304g GI:50305131


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000974 Prp19 complex C
IDA
SceS000004826
GO:0071006 U2-type catalytic step 1 spliceosome C
IDA
SceS000004826
GO:0000384 first spliceosomal transesterification
activity		 F
IC
SceS000004826
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000004826
GO:0016071 mRNA metabolic process P
RCA
SceS000004826

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2126

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5201 ENSANGP00000011065
Ashbya gossypii (Ago) ago2845 AER344W
Arabidopsis thaliana (Ath) ath1004 At1g09770.1
Caenorhabditis elegans (Cel) cel5027 D1081.8
(CE05540;
WBGene00008386)
Candida glabrata (Cgl) cgl1391 CAGL0F03751g
Cryptococcus neoformans (Cne) cne3562 176.m02297
Dictyostelium discoideum (Ddi) ddi12666 DDB0220620
Debaryomyces hansenii (Dha) dha4912 DEHA0F11902g
Drosophila melanogaster (Dme) dme7248 CG6905-PA
(FBgn0035136)
Danio rerio (Dre) dre7787 ENSDARP00000026727
Encephalitozoon cuniculi (Ecu) ecu42 19073963
Takifugu rubripes (Fru) fru30355 SINFRUP00000150402
Takifugu rubripes (Fru) fru30356 SINFRUP00000169521
Gallus gallus (Gga) gga16263 ENSGALP00000026906
(CDC5L)
Homo sapiens (Hsa) hsa27230 ENSP00000265414
Kluyveromyces lactis (Kla) kla1523 KLLA0C07304g
Mus musculus (Mmu) mmu11751 ENSMUSP00000024727
(MGI:1918952)		 Q6A068
Neurospora crassa (Ncr) ncr6806 NCU06994.2
Oryza sativa (Osa) osa84029 8305.m00187
Plasmodium falciparum (Pfa) pfa545 PF10_0327
Rattus norvegicus (Rno) rno29710 ENSRNOP00000027264
(RGD:70892)		 O08837
Rattus norvegicus (Rno) rno29711 ENSRNOP00000042832
Saccharomyces cerevisiae (Sce) sce4982 YMR213W
(S000004826)
Schizosaccharomyces pombe (Spo) spo1175 SPAC644.12 P39964
Yarrowia lipolytica (Yli) yli3545 YALI0D20086g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000974 Prp19 complex C
IDA
SceS000004826
GO:0005634 nucleus C
IDA
SpoSPAC644.12
ISO
MmuMGI:1918952
GO:0005681 spliceosomal complex C
IDA
SpoSPAC644.12
ISS
DmeFBgn0035136
GO:0009507 chloroplast C
IDA
AthAt1g09770
GO:0016607 nuclear speck C
ISO
MmuMGI:1918952
GO:0071006 U2-type catalytic step 1 spliceosome C
IDA
SceS000004826
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0035136
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0035136
GO:0000384 first spliceosomal transesterification
activity		 F
IC
SceS000004826
GO:0003677 DNA binding F
ISS
AthAt1g09770
GO:0003700 transcription factor activity F
ISS
AthAt1g09770
GO:0005515 protein binding F
IPI
SpoSPAC644.12
GO:0019904 protein domain specific binding F
ISO
MmuMGI:1918952
GO:0000003 reproduction P
IMP
CelWBGene00008386
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0035136
IMP
SceS000004826
SpoSPAC644.12
ISS
DmeFBgn0035136
GO:0000910 cytokinesis P
IMP
CelWBGene00008386
GO:0001703 gastrulation with mouth forming
first		 P
IMP
CelWBGene00008386
GO:0002119 nematode larval development P
IMP
CelWBGene00008386
GO:0006355 regulation of transcription, DNA-dependent P
ISS
PfaPF10_0327
GO:0006974 response to DNA damage stimulus P
IMP
CelWBGene00008386
GO:0007369 gastrulation P
IMP
CelWBGene00008386
GO:0008150 biological_process P
ND
MmuMGI:1918952
GO:0009790 embryo development P
IMP
CelWBGene00008386
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00008386
GO:0009870 defense response signaling pathway, resistance
gene-dependent		 P
IMP
AthAt1g09770
GO:0010204 defense response signaling pathway, resistance
gene-independent		 P
IMP
AthAt1g09770
GO:0010389 regulation of G2/M transition of mitotic cell
cycle		 P
IMP
SpoSPAC644.12
GO:0016071 mRNA metabolic process P
RCA
SceS000004826
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00008386
GO:0040007 growth P
IMP
CelWBGene00008386
GO:0042742 defense response to bacterium P
IMP
AthAt1g09770
GO:0045449 regulation of transcription P
TAS
AthAt1g09770
GO:0050832 defense response to fungus P
IMP
AthAt1g09770
GO:0051301 cell division P
IMP
CelWBGene00008386

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC644.12
(P39964)		 YMR213W
(S000004826)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000974 Prp19 complex C
IDA
SceS000004826
GO:0005634 nucleus C
IDA
SpoSPAC644.12
GO:0005681 spliceosomal complex C
IDA
SpoSPAC644.12
GO:0071006 U2-type catalytic step 1 spliceosome C
IDA
SceS000004826
GO:0000384 first spliceosomal transesterification
activity		 F
IC
SceS000004826
GO:0005515 protein binding F
IPI
SpoSPAC644.12
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000004826
SpoSPAC644.12
GO:0010389 regulation of G2/M transition of mitotic cell
cycle		 P
IMP
SpoSPAC644.12
GO:0016071 mRNA metabolic process P
RCA
SceS000004826

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Search for gene by ID or name:

Query species:

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Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk