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Search term: YMR229C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RRP5
SGD link S000004842
Alternative ID YMR229C
Description RNA binding protein with preference for single stranded tracts of U's involved in synthesis of both 18S and 5.8S rRNAs; component of both the ribosomal small subunit (SSU) processosome and the 90S preribosome
Synonyms YMR229C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1070 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING rRNA processing protein Rrp5

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g11964 GI:15229915
Caenorhabditis elegans (Cel) CE27690
(WBGene00002850)
GI:17552198 Q18038
Drosophila melanogaster (Dme) 7301147 GI:7301147
Homo sapiens (Hsa) Hs20544347 GI:20544347
Saccharomyces cerevisiae (Sce) YMR229c
(S000004842)
GI:6323885 Q05022
Schizosaccharomyces pombe (Spo) SPCC1183.07 GI:19075390 O74835
Encephalitozoon cuniculi (Ecu) ECU06g0590 GI:19074309 Q8SVC5
Arabidopsis thaliana (Ath) At3g11964 GI:15229915
Caenorhabditis elegans (Cel) CE27690
(WBGene00002850)
GI:17552198 Q18038
Drosophila melanogaster (Dme) 7301147 GI:7301147
Homo sapiens (Hsa) Hs20544347 GI:20544347
Saccharomyces cerevisiae (Sce) YMR229c
(S000004842)
GI:6323885 Q05022
Schizosaccharomyces pombe (Spo) SPCC1183.07 GI:19075390 O74835
Encephalitozoon cuniculi (Ecu) ECU06g0590 GI:19074309 Q8SVC5


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
AthAt3g11964
SceS000004842
SpoSPCC1183.07
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPCC1183.07
GO:0005886 plasma membrane C
IDA
AthAt3g11964
GO:0030686 90S preribosome C
IDA
SceS000004842
GO:0032040 small-subunit processome C
IDA
SceS000004842
GO:0003723 RNA binding F
ISS
AthAt3g11964
GO:0008266 poly(U) RNA binding F
IDA
SceS000004842
GO:0030515 snoRNA binding F
ISS
SpoSPCC1183.07
GO:0042134 rRNA primary transcript binding F
ISS
SpoSPCC1183.07
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004842
GO:0000464 endonucleolytic cleavage in ITS1 upstream of 5.8S
rRNA from tricistronic rRNA transcript (SSU-rRNA,
5.8S rRNA, LSU-rRNA)
P
IMP
SceS000004842
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004842
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004842
GO:0002119 nematode larval development P
IMP
CelWBGene00002850
GO:0006364 rRNA processing P
ISS
SpoSPCC1183.07
GO:0008406 gonad development P
IMP
CelWBGene00002850
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00002850
GO:0018991 oviposition P
IMP
CelWBGene00002850
GO:0040007 growth P
IMP
CelWBGene00002850
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00002850

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
74968

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) PDCD11 GI:70980549
Pan troglodytes (Ptr) PDCD11 GI:114632662
Canis familiaris (Cfa) PDCD11 GI:73998783
Mus musculus (Mmu) Pdcd11
(MGI:1341788)
GI:54607128 Q3TUH3
Rattus norvegicus (Rno) Pdcd11 GI:109460191
Gallus gallus (Gga) PDCD11 GI:118092989
Schizosaccharomyces pombe (Spo) SPCC1183.07 GI:19075390 O74835
Saccharomyces cerevisiae (Sce) RRP5
(S000004842)
GI:6323885 Q05022
Kluyveromyces lactis (Kla) KLLA0B08239g GI:50303899
Eremothecium gossypii (Ego) AGOS_AFR566C GI:45199084
Magnaporthe grisea (Mgr) MGG_05260 GI:39939960
Neurospora crassa (Ncr) NCU06272.1 GI:32411293
Arabidopsis thaliana (Ath) AT3G11964 GI:15229915
Oryza sativa (Osa) Os07g0203300 GI:115471081
Plasmodium falciparum (Pfa) PF14_0042 GI:124808061


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
HsaPDCD11
GO:0005730 nucleolus C
IDA
AthAt3g11964
SceS000004842
SpoSPCC1183.07
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPCC1183.07
GO:0005829 cytosol C
IDA
MmuMGI:1341788
GO:0005886 plasma membrane C
IDA
AthAt3g11964
GO:0030686 90S preribosome C
IDA
SceS000004842
GO:0032040 small-subunit processome C
IDA
SceS000004842
GO:0003674 molecular_function F
ND
MmuMGI:1341788
GO:0003723 RNA binding F
ISS
AthAt3g11964
GO:0005515 protein binding F
IPI
HsaPDCD11
GO:0008134 transcription factor binding F
IPI
HsaPDCD11
GO:0008266 poly(U) RNA binding F
IDA
SceS000004842
GO:0030515 snoRNA binding F
ISS
SpoSPCC1183.07
GO:0042134 rRNA primary transcript binding F
ISS
SpoSPCC1183.07
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004842
GO:0000464 endonucleolytic cleavage in ITS1 upstream of 5.8S
rRNA from tricistronic rRNA transcript (SSU-rRNA,
5.8S rRNA, LSU-rRNA)
P
IMP
SceS000004842
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004842
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004842
GO:0006355 regulation of transcription, DNA-dependent P
TAS
MmuMGI:1341788
GO:0006364 rRNA processing P
ISS
SpoSPCC1183.07
GO:0006915 apoptosis P
TAS
MmuMGI:1341788
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB
cascade
P
TAS
MmuMGI:1341788

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_560

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga6046 ENSANGP00000011318
Ashbya gossypii (Ago) ago3758 AFR566C
Arabidopsis thaliana (Ath) ath13327 At3g11964.1
Arabidopsis thaliana (Ath) ath25198 At5g30510.1
Caenorhabditis elegans (Cel) cel2110 C16A3.3
(CE27690;
WBGene00002850)
Candida glabrata (Cgl) cgl4867 CAGL0M04829g
Cryptococcus neoformans (Cne) cne2977 167.m03274
Dictyostelium discoideum (Ddi) ddi9700 DDB0188761
Debaryomyces hansenii (Dha) dha5871 DEHA0G03960g
Drosophila melanogaster (Dme) dme14200 CG5728-PA
(FBgn0039182)
Danio rerio (Dre) dre1083 ENSDARP00000027151
Danio rerio (Dre) dre1082 ENSDARP00000032888
(pdcd11)
Q502F4
Escherichia coli (Eco) eco881 16128878
Takifugu rubripes (Fru) fru28157 SINFRUP00000134892
Gallus gallus (Gga) gga20799 ENSGALP00000013431
(PDCD11)
Homo sapiens (Hsa) hsa4552 ENSP00000278073
Kluyveromyces lactis (Kla) kla895 KLLA0B08239g
Mus musculus (Mmu) mmu13871 ENSMUSP00000072008
(MGI:1341788)
Q6NS46
Mus musculus (Mmu) mmu13872 ENSMUSP00000078020
(MGI:1341788)
Neurospora crassa (Ncr) ncr6097 NCU06272.2
Oryza sativa (Osa) osa72716 7230.m00128
Oryza sativa (Osa) osa76588 7301.m00151
Oryza sativa (Osa) osa86248 8346.m00104
Plasmodium falciparum (Pfa) pfa1298 PF14_0042
Rattus norvegicus (Rno) rno4231 ENSRNOP00000027512
(RGD:1304933)
Rattus norvegicus (Rno) rno4230 ENSRNOP00000027521
(RGD:1304933)
Saccharomyces cerevisiae (Sce) sce4998 YMR229C
(S000004842)
Schizosaccharomyces pombe (Spo) spo3091 SPCC1183.07 O74835
Yarrowia lipolytica (Yli) yli5109 YALI0E30217g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IC
DmeFBgn0039182
GO:0005730 nucleolus C
IDA
AthAt3g11964
SceS000004842
SpoSPCC1183.07
ISS
DmeFBgn0039182
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPCC1183.07
GO:0005829 cytosol C
IDA
MmuMGI:1341788
GO:0005886 plasma membrane C
IDA
AthAt3g11964
GO:0009507 chloroplast C
IDA
AthAt5g30510
GO:0009570 chloroplast stroma C
IDA
AthAt5g30510
GO:0009579 thylakoid C
IDA
AthAt5g30510
GO:0016020 membrane C
IDA
AthAt5g30510
GO:0030686 90S preribosome C
IDA
SceS000004842
GO:0032040 small-subunit processome C
IDA
SceS000004842
GO:0003674 molecular_function F
ND
MmuMGI:1341788
GO:0003723 RNA binding F
ISS
AthAt3g11964
At5g30510
GO:0003729 mRNA binding F
ISS
DmeFBgn0039182
GO:0008266 poly(U) RNA binding F
IDA
SceS000004842
GO:0030515 snoRNA binding F
ISS
SpoSPCC1183.07
GO:0042134 rRNA primary transcript binding F
ISS
SpoSPCC1183.07
GO:0000381 regulation of alternative nuclear mRNA splicing,
via spliceosome
P
IMP
DmeFBgn0039182
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004842
GO:0000464 endonucleolytic cleavage in ITS1 upstream of 5.8S
rRNA from tricistronic rRNA transcript (SSU-rRNA,
5.8S rRNA, LSU-rRNA)
P
IMP
SceS000004842
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004842
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004842
GO:0002119 nematode larval development P
IMP
CelWBGene00002850
GO:0006355 regulation of transcription, DNA-dependent P
TAS
MmuMGI:1341788
GO:0006364 rRNA processing P
ISS
DmeFBgn0039182
SpoSPCC1183.07
GO:0006915 apoptosis P
TAS
MmuMGI:1341788
GO:0008406 gonad development P
IMP
CelWBGene00002850
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00002850
GO:0018991 oviposition P
IMP
CelWBGene00002850
GO:0040007 growth P
IMP
CelWBGene00002850
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00002850
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB
cascade
P
TAS
MmuMGI:1341788

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPCC1183.07
(O74835)
YMR229C
(S000004842)