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Search term: YMR234W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RNH1
SGD link S000004847
Alternative ID YMR234W
Description Ribonuclease H1; able to bind double-stranded RNAs and RNA-DNA hybrids; associates with RNAse polymerase I; the homolog of mammalian RNAse HII (the S. cerevisiae homolog of mammalian RNAse HI is RNH201)
Synonyms YMR234W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3752 -CDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Ribonuclease H

Species KOG link NCBI link UniProt link
Caenorhabditis elegans (Cel) CE01984 GI:17534557
Caenorhabditis elegans (Cel) CE06185
(WBGene00010787)
GI:17535073 Q21439
Caenorhabditis elegans (Cel) CE16374 GI:17536173
Caenorhabditis elegans (Cel) CE19682
(WBGene00007303)
GI:17505482 Q9XVE6
Caenorhabditis elegans (Cel) CE29157 GI:17538109
Drosophila melanogaster (Dme) 7304133
(FBgn0023171)
GI:17137476 A1Z768
Homo sapiens (Hsa) HsM4506555 GI:4506555
Homo sapiens (Hsa) Hs21359816 GI:13878716 O60930
Saccharomyces cerevisiae (Sce) YMR234w
(S000004847)
GI:6323890 Q04740
Schizosaccharomyces pombe (Spo) SPBC336.06c GI:19112918 Q9UST8


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005622 intracellular C
TAS
SceS000004847
GO:0005634 nucleus C
IC
SceS000004847
SpoSPBC336.06c
IDA
SpoSPBC336.06c
GO:0005730 nucleolus C
IDA
SpoSPBC336.06c
GO:0004523 ribonuclease H activity F
IDA
DmeFBgn0023171
SceS000004847
ISS
DmeFBgn0023171
SpoSPBC336.06c
GO:0006401 RNA catabolic process P
IDA
SceS000004847
ISS
SpoSPBC336.06c
GO:0031505 fungal-type cell wall organization P
IMP
SceS000004847

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
2202

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RNASEH1 GI:21359816
Pan troglodytes (Ptr) RNASEH1 GI:114575921
Canis familiaris (Cfa) RNASEH1P1 GI:73979924
Mus musculus (Mmu) Rnaseh1
(MGI:1335073)
GI:6755334 O70338
Rattus norvegicus (Rno) Rnaseh1
(RGD:1309012)
GI:61556933
Gallus gallus (Gga) RNASEH1 GI:45384532
Drosophila melanogaster (Dme) rnh1
(FBgn0023171)
GI:17137476 A1Z768
Anopheles gambiae (Aga) AgaP_AGAP008088 GI:158297078
Caenorhabditis elegans (Cel) rnh-1.0
(CE33659;
WBGene00004382)
GI:115532542
Schizosaccharomyces pombe (Spo) rnh1
(SPBC336.06c)
GI:19112918 Q9UST8
Saccharomyces cerevisiae (Sce) RNH1
(S000004847)
GI:6323890 Q04740
Kluyveromyces lactis (Kla) KLLA0B12958g GI:50304317
Magnaporthe grisea (Mgr) MGG_14004 GI:145604442
Neurospora crassa (Ncr) NCU05750.1 GI:32410249


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005622 intracellular C
TAS
SceS000004847
GO:0005634 nucleus C
IC
SceS000004847
SpoSPBC336.06c
IDA
MmuMGI:1335073
SpoSPBC336.06c
GO:0005730 nucleolus C
IDA
SpoSPBC336.06c
GO:0005739 mitochondrion C
IDA
MmuMGI:1335073
GO:0003676 nucleic acid binding F
TAS
HsaRNASEH1
GO:0003723 RNA binding F
TAS
HsaRNASEH1
GO:0004523 ribonuclease H activity F
IDA
DmeFBgn0023171
MmuMGI:1335073
SceS000004847
ISS
DmeFBgn0023171
MmuMGI:1335073
SpoSPBC336.06c
GO:0004540 ribonuclease activity F
TAS
HsaRNASEH1
GO:0042803 protein homodimerization activity F
IDA
MmuMGI:1335073
GO:0006264 mitochondrial DNA replication P
IMP
MmuMGI:1335073
GO:0006401 RNA catabolic process P
IDA
SceS000004847
ISS
SpoSPBC336.06c
TAS
HsaRNASEH1
GO:0008152 metabolic process P
IDA
MmuMGI:1335073
ISS
MmuMGI:1335073
GO:0031505 fungal-type cell wall organization P
IMP
SceS000004847

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1389

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga10065 ENSANGP00000011612
Anopheles gambiae (Aga) aga14362 ENSANGP00000014694
Ashbya gossypii (Ago) ago575 ABL017C
Caenorhabditis elegans (Cel) cel1035 C04F12.9
(CE19682;
WBGene00007303)
Caenorhabditis elegans (Cel) cel11026 F59A6.9
Candida glabrata (Cgl) cgl3173 CAGL0J04246g
Cryptococcus neoformans (Cne) cne2111 181.m08753
Dictyostelium discoideum (Ddi) ddi11005 DDB0220051
Debaryomyces hansenii (Dha) dha3352 DEHA0E02475g
Drosophila melanogaster (Dme) dme3767 CG8729-PA
(FBgn0023171)
Drosophila melanogaster (Dme) dme3768 CG8729-PB
(FBgn0023171)
Danio rerio (Dre) dre12625 ENSDARP00000015392
Escherichia coli (Eco) eco210 16128201
Takifugu rubripes (Fru) fru29849 SINFRUP00000131271
Gallus gallus (Gga) gga15934 ENSGALP00000026388
(RNASEH1)
Q91953
Homo sapiens (Hsa) hsa17413 ENSP00000313350
(RNASEH1)
O60930
Kluyveromyces lactis (Kla) kla1106 KLLA0B12958g
Mus musculus (Mmu) mmu5570 ENSMUSP00000020959
(MGI:1335073)
Q8BU23
Neurospora crassa (Ncr) ncr5588 NCU05750.2
Rattus norvegicus (Rno) rno24957 ENSRNOP00000011819
(RGD:1309012)
Q5BK46
Saccharomyces cerevisiae (Sce) sce5004 YMR234W
(S000004847)
Schizosaccharomyces pombe (Spo) spo230 SPBC336.06c Q9UST8
Yarrowia lipolytica (Yli) yli214 YALI0A06523g
Yarrowia lipolytica (Yli) yli328 YALI0A09878g
Yarrowia lipolytica (Yli) yli426 YALI0A12683g
Yarrowia lipolytica (Yli) yli427 YALI0A12705g
Yarrowia lipolytica (Yli) yli492 YALI0A15059g
Yarrowia lipolytica (Yli) yli525 YALI0A16148g
Yarrowia lipolytica (Yli) yli4306 YALI0E10725g
Yarrowia lipolytica (Yli) yli6453 YALI0F26543g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005622 intracellular C
TAS
SceS000004847
GO:0005634 nucleus C
IC
SceS000004847
SpoSPBC336.06c
IDA
MmuMGI:1335073
SpoSPBC336.06c
GO:0005730 nucleolus C
IDA
SpoSPBC336.06c
GO:0005739 mitochondrion C
IDA
MmuMGI:1335073
GO:0004523 ribonuclease H activity F
IDA
DmeFBgn0023171
MmuMGI:1335073
SceS000004847
ISS
DmeFBgn0023171
MmuMGI:1335073
SpoSPBC336.06c
GO:0042803 protein homodimerization activity F
IDA
MmuMGI:1335073
GO:0006264 mitochondrial DNA replication P
IMP
MmuMGI:1335073
GO:0006401 RNA catabolic process P
IDA
SceS000004847
ISS
SpoSPBC336.06c
GO:0008152 metabolic process P
IDA
MmuMGI:1335073
ISS
MmuMGI:1335073
GO:0031505 fungal-type cell wall organization P
IMP
SceS000004847

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC336.06c
(Q9UST8)
YMR234W
(S000004847)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005622 intracellular C
TAS
SceS000004847
GO:0005634 nucleus C
IC
SceS000004847
SpoSPBC336.06c
IDA
SpoSPBC336.06c
GO:0005730 nucleolus C
IDA
SpoSPBC336.06c
GO:0004523 ribonuclease H activity F
IDA
SceS000004847
ISS
SpoSPBC336.06c
GO:0006401 RNA catabolic process P
IDA
SceS000004847
ISS
SpoSPBC336.06c
GO:0031505 fungal-type cell wall organization P
IMP
SceS000004847

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GO info in one table:

s.khadayate@ucl.ac.uk