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Search term: YMR236W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TAF9
SGD link S000004849
Alternative ID YMR236W
Description Subunit (17 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H3
Synonyms YMR236W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3334 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g54140 GI:15221048
Caenorhabditis elegans (Cel) CE16404
(WBGene00006391)		 GI:17555056 O45784
Drosophila melanogaster (Dme) 7293389 GI:17647405
Homo sapiens (Hsa) Hs4507351 GI:4507351 Q16594
Homo sapiens (Hsa) Hs20070280 GI:14757665
Homo sapiens (Hsa) Hs22056108 GI:22056108
Homo sapiens (Hsa) Hs20483285 GI:20483285
Saccharomyces cerevisiae (Sce) YMR236w
(S000004849)		 GI:6323892 Q05027
Schizosaccharomyces pombe (Spo) SPAC12G12.05c GI:19113805 Q09869
Encephalitozoon cuniculi (Ecu) ECU01g1330 GI:19075146


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000124 SAGA complex C
IDA
SceS000004849
ISS
SpoSPAC12G12.05c
GO:0000790 nuclear chromatin C
IC
SpoSPAC12G12.05c
GO:0005634 nucleus C
IDA
CelWBGene00006391
SpoSPAC12G12.05c
GO:0005669 transcription factor TFIID complex C
IDA
SceS000004849
ISS
AthAt1g54140
SpoSPAC12G12.05c
GO:0005829 cytosol C
IDA
SpoSPAC12G12.05c
GO:0046695 SLIK (SAGA-like) complex C
IDA
SceS000004849
GO:0003682 chromatin binding F
IDA
SceS000004849
GO:0003704 specific RNA polymerase II transcription factor
activity		 F
IMP
SceS000004849
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IDA
SceS000004849
ISS
SpoSPAC12G12.05c
GO:0016986 transcription initiation factor
activity		 F
ISS
AthAt1g54140
GO:0032947 protein complex scaffold F
IMP
SceS000004849
GO:0006338 chromatin remodeling P
IC
SpoSPAC12G12.05c
GO:0006352 transcription initiation P
ISS
AthAt1g54140
RCA
SceS000004849
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
SpoSPAC12G12.05c
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000004849
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00006391
GO:0009794 regulation of mitotic cell cycle,
embryonic		 P
IMP
CelWBGene00006391
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IMP
CelWBGene00006391
GO:0016568 chromatin modification P
IDA
SceS000004849
GO:0016573 histone acetylation P
IDA
SceS000004849
ISS
SpoSPAC12G12.05c
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000004849
GO:0032569 gene-specific transcription from RNA polymerase II
promoter		 P
IMP
SceS000004849
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00006391
GO:0040011 locomotion P
IMP
CelWBGene00006391
GO:0040015 negative regulation of multicellular organism
growth		 P
IMP
CelWBGene00006391
GO:0045449 regulation of transcription P
ISS
SpoSPAC12G12.05c
GO:0051123 RNA polymerase II transcriptional preinitiation
complex assembly		 P
IMP
SceS000004849

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39986

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) TAF9 GI:62865614
Canis familiaris (Cfa) TAF9 GI:73949701
Mus musculus (Mmu) Taf9
(MGI:1888697)		 GI:18079237 Q8VCP8
Rattus norvegicus (Rno) Taf9
(RGD:727861)		 GI:82617594
Gallus gallus (Gga) TAF9 GI:118089303
Drosophila melanogaster (Dme) e(y)1
(FBgn0000617)		 GI:45549141
Anopheles gambiae (Aga) AgaP_AGAP003094 GI:158291251
Schizosaccharomyces pombe (Spo) taf9
(SPAC12G12.05c)		 GI:19113805 Q09869
Saccharomyces cerevisiae (Sce) TAF9
(S000004849)		 GI:6323892 Q05027
Kluyveromyces lactis (Kla) KLLA0F25003g GI:50312321
Eremothecium gossypii (Ego) AGOS_AFR527W GI:45199045


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000124 SAGA complex C
IDA
SceS000004849
IPI
DmeFBgn0000617
ISS
SpoSPAC12G12.05c
GO:0000125 PCAF complex C
IDA
HsaTAF9
GO:0000790 nuclear chromatin C
IC
SpoSPAC12G12.05c
GO:0005634 nucleus C
IDA
MmuMGI:1888697
SpoSPAC12G12.05c
ISS
DmeFBgn0000617
GO:0005654 nucleoplasm C
EXP
HsaTAF9
IDA
HsaTAF9
GO:0005669 transcription factor TFIID complex C
IDA
HsaTAF9
SceS000004849
IPI
DmeFBgn0000617
ISO
MmuMGI:1888697
ISS
DmeFBgn0000617
SpoSPAC12G12.05c
NAS
DmeFBgn0000617
GO:0005829 cytosol C
IDA
SpoSPAC12G12.05c
GO:0015030 Cajal body C
IDA
HsaTAF9
GO:0030914 STAGA complex C
IDA
HsaTAF9
GO:0033276 transcription factor TFTC complex C
IDA
HsaTAF9
GO:0046695 SLIK (SAGA-like) complex C
IDA
SceS000004849
GO:0070761 pre-snoRNP complex C
IDA
HsaTAF9
GO:0071339 MLL1 complex C
IDA
HsaTAF9
GO:0002039 p53 binding F
IPI
HsaTAF9
GO:0003677 DNA binding F
IDA
HsaTAF9
MmuMGI:1888697
GO:0003682 chromatin binding F
IDA
SceS000004849
GO:0003702 RNA polymerase II transcription factor
activity		 F
NAS
DmeFBgn0000617
GO:0003704 specific RNA polymerase II transcription factor
activity		 F
IMP
SceS000004849
GO:0003713 transcription coactivator activity F
IDA
HsaTAF9
IMP
HsaTAF9
GO:0004402 histone acetyltransferase activity F
IDA
HsaTAF9
GO:0005515 protein binding F
IPI
HsaTAF9
GO:0010843 promoter binding F
IDA
HsaTAF9
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IDA
SceS000004849
ISS
DmeFBgn0000617
SpoSPAC12G12.05c
GO:0016563 transcription activator activity F
ISS
DmeFBgn0000617
GO:0032947 protein complex scaffold F
IMP
SceS000004849
GO:0033613 transcription activator binding F
IPI
HsaTAF9
GO:0070742 C2H2 zinc finger domain binding F
IPI
HsaTAF9
GO:0006338 chromatin remodeling P
IC
SpoSPAC12G12.05c
GO:0006352 transcription initiation P
RCA
SceS000004849
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
NAS
DmeFBgn0000617
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaTAF9
ISS
DmeFBgn0000617
SpoSPAC12G12.05c
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaTAF9
GO:0006974 response to DNA damage stimulus P
IC
HsaTAF9
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000004849
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IDA
HsaTAF9
IMP
MmuMGI:1888697
GO:0016568 chromatin modification P
IDA
SceS000004849
GO:0016573 histone acetylation P
IDA
SceS000004849
ISS
SpoSPAC12G12.05c
GO:0030307 positive regulation of cell growth P
IMP
HsaTAF9
GO:0032435 negative regulation of proteasomal
ubiquitin-dependent protein catabolic
process		 P
IDA
HsaTAF9
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000004849
GO:0032569 gene-specific transcription from RNA polymerase II
promoter		 P
IMP
SceS000004849
GO:0043066 negative regulation of apoptosis P
IMP
HsaTAF9
GO:0043966 histone H3 acetylation P
IDA
HsaTAF9
GO:0045449 regulation of transcription P
ISS
SpoSPAC12G12.05c
GO:0051123 RNA polymerase II transcriptional preinitiation
complex assembly		 P
IMP
SceS000004849
GO:0060760 positive regulation of response to cytokine
stimulus		 P
IMP
HsaTAF9
GO:0070555 response to interleukin-1 P
IMP
HsaTAF9

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2925

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5378 ENSANGP00000020370
Ashbya gossypii (Ago) ago3719 AFR527W
Arabidopsis thaliana (Ath) ath4724 At1g54140.1
Caenorhabditis elegans (Cel) cel15364 T12D8.7
(CE16404;
WBGene00006391)
Candida glabrata (Cgl) cgl4875 CAGL0M05005g
Cryptococcus neoformans (Cne) cne3518 176.m02243
Dictyostelium discoideum (Ddi) ddi11793 DDB0230997
Debaryomyces hansenii (Dha) dha6079 DEHA0G08459g
Drosophila melanogaster (Dme) dme18384 CG6474-PA
(FBgn0000617)
Danio rerio (Dre) dre5561 ENSDARP00000021940
Encephalitozoon cuniculi (Ecu) ecu1783 19075146
Gallus gallus (Gga) gga16639 ENSGALP00000006643
(TAF9)
Homo sapiens (Hsa) hsa25326 ENSP00000217893
(TAF9)		 Q16594
Homo sapiens (Hsa) hsa33026 ENSP00000337534
Homo sapiens (Hsa) hsa33729 ENSP00000339917
(TAF9B)		 Q9HBM6
Kluyveromyces lactis (Kla) kla5194 KLLA0F25003g
Mus musculus (Mmu) mmu29433 ENSMUSP00000059751
(MGI:3039562)		 Q6NZA9
Mus musculus (Mmu) mmu17949 ENSMUSP00000077960
Mus musculus (Mmu) mmu7471 ENSMUSP00000078136
Neurospora crassa (Ncr) ncr3042 NCU03138.2
Oryza sativa (Osa) osa64989 6724.m00127
Rattus norvegicus (Rno) rno31806 ENSRNOP00000003335
(RGD:621116)		 Q62880
Rattus norvegicus (Rno) rno31807 ENSRNOP00000039810
Rattus norvegicus (Rno) rno31808 ENSRNOP00000041319
(RGD:727861)		 Q5BKE0
Rattus norvegicus (Rno) rno31809 ENSRNOP00000050277
Saccharomyces cerevisiae (Sce) sce5006 YMR236W
(S000004849)
Schizosaccharomyces pombe (Spo) spo3526 SPAC12G12.05c Q09869
Yarrowia lipolytica (Yli) yli4817 YALI0E23133g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000124 SAGA complex C
IDA
SceS000004849
IPI
DmeFBgn0000617
ISS
SpoSPAC12G12.05c
GO:0000790 nuclear chromatin C
IC
SpoSPAC12G12.05c
GO:0005575 cellular_component C
ND
MmuMGI:3039562
GO:0005634 nucleus C
IDA
CelWBGene00006391
SpoSPAC12G12.05c
ISS
DmeFBgn0000617
GO:0005669 transcription factor TFIID complex C
IDA
SceS000004849
IPI
DmeFBgn0000617
ISS
AthAt1g54140
DmeFBgn0000617
SpoSPAC12G12.05c
NAS
DmeFBgn0000617
GO:0005829 cytosol C
IDA
SpoSPAC12G12.05c
GO:0046695 SLIK (SAGA-like) complex C
IDA
SceS000004849
GO:0003674 molecular_function F
ND
MmuMGI:3039562
GO:0003682 chromatin binding F
IDA
SceS000004849
GO:0003702 RNA polymerase II transcription factor
activity		 F
NAS
DmeFBgn0000617
GO:0003704 specific RNA polymerase II transcription factor
activity		 F
IMP
SceS000004849
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IDA
SceS000004849
ISS
DmeFBgn0000617
SpoSPAC12G12.05c
GO:0016563 transcription activator activity F
ISS
DmeFBgn0000617
GO:0016986 transcription initiation factor
activity		 F
ISS
AthAt1g54140
GO:0032947 protein complex scaffold F
IMP
SceS000004849
GO:0006338 chromatin remodeling P
IC
SpoSPAC12G12.05c
GO:0006352 transcription initiation P
ISS
AthAt1g54140
RCA
SceS000004849
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
NAS
DmeFBgn0000617
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
DmeFBgn0000617
SpoSPAC12G12.05c
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000004849
GO:0008150 biological_process P
ND
MmuMGI:3039562
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00006391
GO:0009794 regulation of mitotic cell cycle,
embryonic		 P
IMP
CelWBGene00006391
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IMP
CelWBGene00006391
GO:0016568 chromatin modification P
IDA
SceS000004849
GO:0016573 histone acetylation P
IDA
SceS000004849
ISS
SpoSPAC12G12.05c
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000004849
GO:0032569 gene-specific transcription from RNA polymerase II
promoter		 P
IMP
SceS000004849
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00006391
GO:0040011 locomotion P
IMP
CelWBGene00006391
GO:0040015 negative regulation of multicellular organism
growth		 P
IMP
CelWBGene00006391
GO:0045449 regulation of transcription P
ISS
SpoSPAC12G12.05c
GO:0051123 RNA polymerase II transcriptional preinitiation
complex assembly		 P
IMP
SceS000004849

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC12G12.05c
(Q09869)		 YMR236W
(S000004849)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000124 SAGA complex C
IDA
SceS000004849
ISS
SpoSPAC12G12.05c
GO:0000790 nuclear chromatin C
IC
SpoSPAC12G12.05c
GO:0005634 nucleus C
IDA
SpoSPAC12G12.05c
GO:0005669 transcription factor TFIID complex C
IDA
SceS000004849
ISS
SpoSPAC12G12.05c
GO:0005829 cytosol C
IDA
SpoSPAC12G12.05c
GO:0046695 SLIK (SAGA-like) complex C
IDA
SceS000004849
GO:0003682 chromatin binding F
IDA
SceS000004849
GO:0003704 specific RNA polymerase II transcription factor
activity		 F
IMP
SceS000004849
GO:0016251 general RNA polymerase II transcription factor
activity		 F
IDA
SceS000004849
ISS
SpoSPAC12G12.05c
GO:0032947 protein complex scaffold F
IMP
SceS000004849
GO:0006338 chromatin remodeling P
IC
SpoSPAC12G12.05c
GO:0006352 transcription initiation P
RCA
SceS000004849
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
SpoSPAC12G12.05c
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000004849
GO:0016568 chromatin modification P
IDA
SceS000004849
GO:0016573 histone acetylation P
IDA
SceS000004849
ISS
SpoSPAC12G12.05c
GO:0032568 general transcription from RNA polymerase II
promoter		 P
IDA
SceS000004849
GO:0032569 gene-specific transcription from RNA polymerase II
promoter		 P
IMP
SceS000004849
GO:0045449 regulation of transcription P
ISS
SpoSPAC12G12.05c
GO:0051123 RNA polymerase II transcriptional preinitiation
complex assembly		 P
IMP
SceS000004849

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GO info in one table:

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