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Search term: YMR239C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RNT1
SGD link S000004852
Alternative ID YMR239C
Description RNAase III; involved in rDNA transcription and rRNA processing; also cleaves a stem-loop structure at the 3' end of U2 snRNA to ensure formation of the correct U2 3' end; involved in polyadenylation-independent transcription termination
Synonyms YMR239C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1817 -CDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Ribonuclease

Species KOG link NCBI link UniProt link
Caenorhabditis elegans (Cel) CE29039
(WBGene00009163)		 GI:17506883 O01326
Drosophila melanogaster (Dme) 7304132
(FBgn0026722)		 GI:17137682
Homo sapiens (Hsa) Hs21359822 GI:8886722 Q9NRR4
Homo sapiens (Hsa) HsM7106397 GI:7106397
Saccharomyces cerevisiae (Sce) YMR239c
(S000004852)		 GI:6323895 Q02555
Schizosaccharomyces pombe (Spo) SPBC119.11c GI:19112084 P22192


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC119.11c
ISS
DmeFBgn0026722
GO:0005654 nucleoplasm C
IDA
SceS000004852
GO:0005730 nucleolus C
IDA
SceS000004852
ISS
SpoSPBC119.11c
GO:0003723 RNA binding F
ISS
SpoSPBC119.11c
GO:0003725 double-stranded RNA binding F
ISS
DmeFBgn0026722
GO:0004525 ribonuclease III activity F
IDA
SceS000004852
ISS
DmeFBgn0026722
NAS
DmeFBgn0026722
TAS
SpoSPBC119.11c
GO:0000003 reproduction P
IMP
CelWBGene00009163
GO:0000910 cytokinesis P
IMP
CelWBGene00009163
GO:0006325 chromatin organization P
IMP
SceS000004852
GO:0006364 rRNA processing P
IMP
SceS000004852
SpoSPBC119.11c
GO:0007052 mitotic spindle organization P
IMP
CelWBGene00009163
GO:0009303 rRNA transcription P
IMP
SceS000004852
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00009163
GO:0016180 snRNA processing P
IMP
SpoSPBC119.11c
GO:0030847 termination of RNA polymerase II transcription,
poly(A)-independent		 P
IDA
SceS000004852
IMP
SceS000004852
IPI
SceS000004852
GO:0031053 primary microRNA processing P
IMP
DmeFBgn0026722
ISS
DmeFBgn0026722
GO:0031137 regulation of conjugation with cellular
fusion		 P
IMP
SpoSPBC119.11c
GO:0034473 U1 snRNA 3'-end processing P
IMP
SceS000004852
GO:0034475 U4 snRNA 3'-end processing P
IMP
SceS000004852
GO:0034476 U5 snRNA 3'-end processing P
IMP
SceS000004852

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39989

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) hcs
(SPAC4F8.14c)		 GI:19112084 P54874
Saccharomyces cerevisiae (Sce) RNT1
(S000004852)		 GI:6323895 Q02555
Kluyveromyces lactis (Kla) KLLA0F24816g GI:50312305
Eremothecium gossypii (Ego) AGOS_AFR538C GI:45199056


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC4F8.14c
GO:0005654 nucleoplasm C
IDA
SceS000004852
GO:0005730 nucleolus C
IDA
SceS000004852
GO:0005783 endoplasmic reticulum C
IC
SpoSPAC4F8.14c
GO:0005829 cytosol C
IDA
SpoSPAC4F8.14c
GO:0004421 hydroxymethylglutaryl-CoA synthase
activity		 F
IMP
SpoSPAC4F8.14c
GO:0004525 ribonuclease III activity F
IDA
SceS000004852
GO:0006084 acetyl-CoA metabolic process P
IMP
SpoSPAC4F8.14c
GO:0006325 chromatin organization P
IMP
SceS000004852
GO:0006364 rRNA processing P
IMP
SceS000004852
GO:0006696 ergosterol biosynthetic process P
IMP
SpoSPAC4F8.14c
GO:0009303 rRNA transcription P
IMP
SceS000004852
GO:0010142 farnesyl diphosphate biosynthetic process,
mevalonate pathway		 P
IMP
SpoSPAC4F8.14c
GO:0030847 termination of RNA polymerase II transcription,
poly(A)-independent		 P
IDA
SceS000004852
IMP
SceS000004852
IPI
SceS000004852
GO:0034473 U1 snRNA 3'-end processing P
IMP
SceS000004852
GO:0034475 U4 snRNA 3'-end processing P
IMP
SceS000004852
GO:0034476 U5 snRNA 3'-end processing P
IMP
SceS000004852
GO:0070317 negative regulation of G0 to G1
transition		 P
IMP
SpoSPAC4F8.14c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1391

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga10064 ENSANGP00000011622
Anopheles gambiae (Aga) aga10063 ENSANGP00000028563
Ashbya gossypii (Ago) ago3730 AFR538C
Arabidopsis thaliana (Ath) ath19358 At4g15417.1
Caenorhabditis elegans (Cel) cel7378 F26E4.10
Candida glabrata (Cgl) cgl2937 CAGL0I09636g
Candida glabrata (Cgl) cgl4880 CAGL0M05159g
Cryptococcus neoformans (Cne) cne1466 180.m00420
Debaryomyces hansenii (Dha) dha917 DEHA0B05181g
Drosophila melanogaster (Dme) dme3769 CG8730-PA
(FBgn0026722)
Danio rerio (Dre) dre3449 ENSDARP00000012341
Escherichia coli (Eco) eco2488 16130492
Takifugu rubripes (Fru) fru26298 SINFRUP00000159261
Gallus gallus (Gga) gga10585 ENSGALP00000021035
(RNASEN)		 Q5ZIR3
Gallus gallus (Gga) gga10586 ENSGALP00000021036
Gallus gallus (Gga) gga10587 ENSGALP00000021037
Gallus gallus (Gga) gga10588 ENSGALP00000021038
Homo sapiens (Hsa) hsa25083 ENSP00000265075
(RNASEN)		 Q9NRR4-2
Homo sapiens (Hsa) hsa25082 ENSP00000339845
(RNASEN)		 Q9NRR4-1
Kluyveromyces lactis (Kla) kla5185 KLLA0F24816g
Mus musculus (Mmu) mmu8798 ENSMUSP00000022802
(MGI:1261425)		 Q80Z69
Neurospora crassa (Ncr) ncr1714 NCU01762.2
Rattus norvegicus (Rno) rno15673 ENSRNOP00000018031
(RGD:1307626)
Rattus norvegicus (Rno) rno15674 ENSRNOP00000050633
(RGD:1307626)
Saccharomyces cerevisiae (Sce) sce5009 YMR239C
(S000004852)
Schizosaccharomyces pombe (Spo) spo716 SPBC119.11c P22192
Yarrowia lipolytica (Yli) yli2192 YALI0C11429g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt4g15417
MmuMGI:1261425
GO:0005634 nucleus C
IDA
SpoSPBC119.11c
ISS
DmeFBgn0026722
GO:0005654 nucleoplasm C
IDA
SceS000004852
GO:0005730 nucleolus C
IDA
SceS000004852
ISS
SpoSPBC119.11c
GO:0003723 RNA binding F
ISS
AthAt4g15417
SpoSPBC119.11c
GO:0003725 double-stranded RNA binding F
ISS
DmeFBgn0026722
GO:0004525 ribonuclease III activity F
IDA
SceS000004852
ISS
AthAt4g15417
DmeFBgn0026722
NAS
DmeFBgn0026722
TAS
SpoSPBC119.11c
GO:0005515 protein binding F
IPI
MmuMGI:1261425
GO:0006325 chromatin organization P
IMP
SceS000004852
GO:0006364 rRNA processing P
IMP
SceS000004852
SpoSPBC119.11c
GO:0006396 RNA processing P
ISS
AthAt4g15417
GO:0008150 biological_process P
ND
MmuMGI:1261425
GO:0009303 rRNA transcription P
IMP
SceS000004852
GO:0016180 snRNA processing P
IMP
SpoSPBC119.11c
GO:0030847 termination of RNA polymerase II transcription,
poly(A)-independent		 P
IDA
SceS000004852
IMP
SceS000004852
IPI
SceS000004852
GO:0031053 primary microRNA processing P
IMP
DmeFBgn0026722
ISS
DmeFBgn0026722
GO:0031137 regulation of conjugation with cellular
fusion		 P
IMP
SpoSPBC119.11c
GO:0034473 U1 snRNA 3'-end processing P
IMP
SceS000004852
GO:0034475 U4 snRNA 3'-end processing P
IMP
SceS000004852
GO:0034476 U5 snRNA 3'-end processing P
IMP
SceS000004852

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC119.11c
(P22192)		 YMR239C
(S000004852)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC119.11c
GO:0005654 nucleoplasm C
IDA
SceS000004852
GO:0005730 nucleolus C
IDA
SceS000004852
ISS
SpoSPBC119.11c
GO:0003723 RNA binding F
ISS
SpoSPBC119.11c
GO:0004525 ribonuclease III activity F
IDA
SceS000004852
TAS
SpoSPBC119.11c
GO:0006325 chromatin organization P
IMP
SceS000004852
GO:0006364 rRNA processing P
IMP
SceS000004852
SpoSPBC119.11c
GO:0009303 rRNA transcription P
IMP
SceS000004852
GO:0016180 snRNA processing P
IMP
SpoSPBC119.11c
GO:0030847 termination of RNA polymerase II transcription,
poly(A)-independent		 P
IDA
SceS000004852
IMP
SceS000004852
IPI
SceS000004852
GO:0031137 regulation of conjugation with cellular
fusion		 P
IMP
SpoSPBC119.11c
GO:0034473 U1 snRNA 3'-end processing P
IMP
SceS000004852
GO:0034475 U4 snRNA 3'-end processing P
IMP
SceS000004852
GO:0034476 U5 snRNA 3'-end processing P
IMP
SceS000004852

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GO info in one table:

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