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Search term: YMR240C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CUS1
SGD link S000004853
Alternative ID YMR240C
Description Protein required for assembly of U2 snRNP into the spliceosome, forms a complex with Hsh49p and Hsh155p
Synonyms YMR240C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2330 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Splicing factor 3b, subunit 2

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g11520 GI:15220415
Arabidopsis thaliana (Ath) At4g21660 GI:15234560
Caenorhabditis elegans (Cel) CE14540
(WBGene00021004)		 GI:17565032 O16997
Drosophila melanogaster (Dme) 7295859 GI:7295859
Homo sapiens (Hsa) Hs5803155 GI:5803155
Homo sapiens (Hsa) Hs20559020 GI:20559020
Saccharomyces cerevisiae (Sce) YMR240c
(S000004853)		 GI:6323896 Q02554
Schizosaccharomyces pombe (Spo) SPAC22F8.10c GI:19115645 Q9UUI3
Encephalitozoon cuniculi (Ecu) ECU11g1490 GI:19074949 Q8SQT5


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC22F8.10c
GO:0005681 spliceosomal complex C
IDA
SpoSPAC22F8.10c
GO:0005686 U2 snRNP C
IDA
SceS000004853
S000004853
ISS
SpoSPAC22F8.10c
GO:0009507 chloroplast C
IDA
AthAt1g11520
GO:0071004 U2-type prespliceosome C
IDA
SceS000004853
GO:0003674 molecular_function F
ND
AthAt1g11520
GO:0003723 RNA binding F
IDA
SceS000004853
ISS
SpoSPAC22F8.10c
GO:0005515 protein binding F
IDA
SceS000004853
GO:0000003 reproduction P
IMP
CelWBGene00021004
GO:0000245 spliceosome assembly P
IDA
SceS000004853
ISS
SpoSPAC22F8.10c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000004853
GO:0002119 nematode larval development P
IMP
CelWBGene00021004
GO:0006397 mRNA processing P
ISS
AthAt4g21660
GO:0008150 biological_process P
ND
AthAt1g11520
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00021004
GO:0016071 mRNA metabolic process P
RCA
SceS000004853
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00021004
GO:0040007 growth P
IMP
CelWBGene00021004
GO:0040011 locomotion P
IMP
CelWBGene00021004
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00021004

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68872

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) CUS1
(S000004853)		 GI:6323896 Q02554
Eremothecium gossypii (Ego) AGOS_AFR539C GI:45199057


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005686 U2 snRNP C
IDA
SceS000004853
S000004853
GO:0071004 U2-type prespliceosome C
IDA
SceS000004853
GO:0003723 RNA binding F
IDA
SceS000004853
GO:0005515 protein binding F
IDA
SceS000004853
GO:0000245 spliceosome assembly P
IDA
SceS000004853
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000004853
GO:0016071 mRNA metabolic process P
RCA
SceS000004853

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2154

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga1714 ENSANGP00000020597
Ashbya gossypii (Ago) ago3731 AFR539C
Arabidopsis thaliana (Ath) ath20082 At4g21660.1
Caenorhabditis elegans (Cel) cel16946 W03F9.10
(CE14540;
WBGene00021004)
Candida glabrata (Cgl) cgl4881 CAGL0M05181g
Cryptococcus neoformans (Cne) cne4397 177.m03148
Dictyostelium discoideum (Ddi) ddi7681 DDB0218611
Debaryomyces hansenii (Dha) dha6001 DEHA0G06743g
Drosophila melanogaster (Dme) dme522 CG3605-PA
(FBgn0031493)
Danio rerio (Dre) dre26463 ENSDARP00000007002
(LOC570994)
Encephalitozoon cuniculi (Ecu) ecu1037 19074949
Takifugu rubripes (Fru) fru22247 SINFRUP00000157254
Takifugu rubripes (Fru) fru22246 SINFRUP00000168009
Takifugu rubripes (Fru) fru22248 SINFRUP00000174712
Homo sapiens (Hsa) hsa6008 ENSP00000318861
(SF3B2)		 Q13435
Homo sapiens (Hsa) hsa6009 ENSP00000347631
(SF3B2)		 Q7Z3K9
Kluyveromyces lactis (Kla) kla4465 KLLA0F08481g
Mus musculus (Mmu) mmu13126 ENSMUSP00000025774
(MGI:2441856)		 Q3UAI4
Neurospora crassa (Ncr) ncr5295 NCU05452.2
Oryza sativa (Osa) osa25509 3848.m00201
Plasmodium falciparum (Pfa) pfa1342 PF14_0587
Rattus norvegicus (Rno) rno3492 ENSRNOP00000027668
(RGD:1307159)
Saccharomyces cerevisiae (Sce) sce5010 YMR240C
(S000004853)
Schizosaccharomyces pombe (Spo) spo2470 SPAC22F8.10c Q9UUI3
Yarrowia lipolytica (Yli) yli2933 YALI0D05577g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2441856
GO:0005634 nucleus C
IDA
SpoSPAC22F8.10c
GO:0005681 spliceosomal complex C
IDA
SpoSPAC22F8.10c
ISS
DmeFBgn0031493
GO:0005686 U2 snRNP C
IDA
SceS000004853
S000004853
ISS
DmeFBgn0031493
SpoSPAC22F8.10c
GO:0071004 U2-type prespliceosome C
IDA
SceS000004853
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0031493
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0031493
GO:0003723 RNA binding F
IDA
SceS000004853
ISS
SpoSPAC22F8.10c
GO:0005515 protein binding F
IDA
SceS000004853
IPI
MmuMGI:2441856
GO:0000003 reproduction P
IMP
CelWBGene00021004
GO:0000245 spliceosome assembly P
IDA
SceS000004853
ISS
SpoSPAC22F8.10c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0031493
IPI
SceS000004853
ISS
DmeFBgn0031493
GO:0002119 nematode larval development P
IMP
CelWBGene00021004
GO:0006397 mRNA processing P
ISS
AthAt4g21660
GO:0008150 biological_process P
ND
MmuMGI:2441856
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00021004
GO:0016071 mRNA metabolic process P
RCA
SceS000004853
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00021004
GO:0040007 growth P
IMP
CelWBGene00021004
GO:0040011 locomotion P
IMP
CelWBGene00021004
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00021004

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC22F8.10c
(Q9UUI3)		 YMR240C
(S000004853)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC22F8.10c
GO:0005681 spliceosomal complex C
IDA
SpoSPAC22F8.10c
GO:0005686 U2 snRNP C
IDA
SceS000004853
S000004853
ISS
SpoSPAC22F8.10c
GO:0071004 U2-type prespliceosome C
IDA
SceS000004853
GO:0003723 RNA binding F
IDA
SceS000004853
ISS
SpoSPAC22F8.10c
GO:0005515 protein binding F
IDA
SceS000004853
GO:0000245 spliceosome assembly P
IDA
SceS000004853
ISS
SpoSPAC22F8.10c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000004853
GO:0016071 mRNA metabolic process P
RCA
SceS000004853

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