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Search term: YMR242C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPL20A
SGD link S000004855
Alternative ID YMR242C
Description Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl20Bp and has similarity to rat L18a ribosomal protein
Synonyms YMR242C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0829 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING 60S ribosomal protein L18A

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g29970_2 GI:12324168
Arabidopsis thaliana (Ath) At2g34480 GI:15226755
Arabidopsis thaliana (Ath) At3g14600 GI:15231888
Caenorhabditis elegans (Cel) CE21392
(WBGene00004432)		 GI:17542004 O44480
Drosophila melanogaster (Dme) 7302760
(FBgn0010409)		 GI:17647885
Homo sapiens (Hsa) Hs11415026
(RPL18A)		 GI:11415026 Q02543
Homo sapiens (Hsa) Hs17444701 GI:17444701
Homo sapiens (Hsa) Hs17485619 GI:17485619
Homo sapiens (Hsa) Hs17485846 GI:17485846
Homo sapiens (Hsa) Hs17486475 GI:17486475
Homo sapiens (Hsa) Hs22041535 GI:22041535
Homo sapiens (Hsa) Hs22052485 GI:22052485
Saccharomyces cerevisiae (Sce) YMR242c
(S000004855)		 GI:6323898
Saccharomyces cerevisiae (Sce) YOR312c
(S000005839)		 GI:6324888
Schizosaccharomyces pombe (Spo) SPAC26A3.04 GI:19115059 P05732
Schizosaccharomyces pombe (Spo) SPAC3A12.10 GI:19114248 P05732
Encephalitozoon cuniculi (Ecu) ECU08g0600i GI:19173386 Q8SRD7
Arabidopsis thaliana (Ath) At1g29970_2 GI:12324168
Arabidopsis thaliana (Ath) At2g34480 GI:15226755
Arabidopsis thaliana (Ath) At3g14600 GI:15231888
Caenorhabditis elegans (Cel) CE21392
(WBGene00004432)		 GI:17542004 O44480
Drosophila melanogaster (Dme) 7302760
(FBgn0010409)		 GI:17647885
Homo sapiens (Hsa) Hs11415026
(RPL18A)		 GI:11415026 Q02543
Homo sapiens (Hsa) Hs17444701 GI:17444701
Homo sapiens (Hsa) Hs17485619 GI:17485619
Homo sapiens (Hsa) Hs17485846 GI:17485846
Homo sapiens (Hsa) Hs17486475 GI:17486475
Homo sapiens (Hsa) Hs22041535 GI:22041535
Homo sapiens (Hsa) Hs22052485 GI:22052485
Saccharomyces cerevisiae (Sce) YMR242c
(S000004855)		 GI:6323898
Saccharomyces cerevisiae (Sce) YOR312c
(S000005839)		 GI:6324888
Schizosaccharomyces pombe (Spo) SPAC26A3.04 GI:19115059 P05732
Schizosaccharomyces pombe (Spo) SPAC3A12.10 GI:19114248 P05732
Encephalitozoon cuniculi (Ecu) ECU08g0600i GI:19173386 Q8SRD7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
SpoSPAC26A3.04
GO:0005829 cytosol C
EXP
HsaRPL18A
IDA
SpoSPAC26A3.04
SPAC3A12.10
GO:0005840 ribosome C
ISS
AthAt2g34480
At3g14600
NAS
DmeFBgn0010409
GO:0005886 plasma membrane C
IDA
AthAt2g34480
GO:0016020 membrane C
IDA
AthAt3g14600
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt2g34480
At3g14600
ISS
DmeFBgn0010409
SpoSPAC3A12.10
SPAC26A3.04
TAS
HsaRPL18A
SceS000004855
S000005839
GO:0022626 cytosolic ribosome C
IDA
AthAt2g34480
At3g14600
GO:0003723 RNA binding F
TAS
HsaRPL18A
GO:0003735 structural constituent of ribosome F
ISS
AthAt2g34480
At3g14600
DmeFBgn0010409
SpoSPAC26A3.04
SPAC3A12.10
NAS
DmeFBgn0010409
TAS
SceS000004855
S000005839
GO:0005515 protein binding F
IPI
HsaRPL18A
GO:0000003 reproduction P
IMP
CelWBGene00004432
GO:0000022 mitotic spindle elongation P
IMP
DmeFBgn0010409
GO:0002119 nematode larval development P
IMP
CelWBGene00004432
GO:0006412 translation P
ISS
AthAt2g34480
At3g14600
DmeFBgn0010409
SpoSPAC26A3.04
SPAC3A12.10
TAS
HsaRPL18A
SceS000005839
S000004855
GO:0006414 translational elongation P
EXP
HsaRPL18A
GO:0006417 regulation of translation P
RCA
SceS000004855
S000005839
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0010409
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004432
GO:0040007 growth P
IMP
CelWBGene00004432
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004432
GO:0042254 ribosome biogenesis P
ISS
AthAt2g34480
At3g14600

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68104

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RPL18A GI:11415026 Q02543
Pan troglodytes (Ptr) LOC459217 GI:114577307
Canis familiaris (Cfa) RPL18A GI:57101324
Mus musculus (Mmu) Rpl18a
(MGI:1924058)		 GI:58037465 P62717
Rattus norvegicus (Rno) Rpl18a GI:47059006
Gallus gallus (Gga) RPL18A GI:118082381
Caenorhabditis elegans (Cel) rpl-20
(CE21392;
WBGene00004432)		 GI:17542004 O44480
Schizosaccharomyces pombe (Spo) rpl20 GI:19115059
Schizosaccharomyces pombe (Spo) rpl18a-2 GI:19114248
Saccharomyces cerevisiae (Sce) RPL20A
(S000004855)		 GI:154199621
Saccharomyces cerevisiae (Sce) RPL20B
(S000005839)		 GI:154200011
Kluyveromyces lactis (Kla) KLLA0F08657g GI:50310901
Eremothecium gossypii (Ego) AGOS_AFR330C GI:54299390
Magnaporthe grisea (Mgr) MGG_03653 GI:39943146
Neurospora crassa (Ncr) NCU08389.1 GI:32417914
Arabidopsis thaliana (Ath) RPL18AA GI:145324074
Arabidopsis thaliana (Ath) AT1G29965 GI:30690964
Arabidopsis thaliana (Ath) AT2G34480 GI:15226755
Arabidopsis thaliana (Ath) AT3G14600 GI:15231888
Oryza sativa (Osa) Os01g0666900 GI:115439051
Oryza sativa (Osa) Os05g0565000 GI:115465471
Oryza sativa (Osa) Os01g0752300 GI:115439969
Plasmodium falciparum (Pfa) PF13_0224 GI:124513556


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1924058
GO:0005829 cytosol C
EXP
HsaRPL18A
GO:0005840 ribosome C
ISS
AthAt2g34480
At3g14600
AT1G29965
GO:0005886 plasma membrane C
IDA
AthAt2g34480
GO:0016020 membrane C
IDA
AthAt3g14600
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt2g34480
At3g14600
AT1G29965
ISS
PfaPF13_0224
TAS
HsaRPL18A
SceS000004855
S000005839
GO:0022626 cytosolic ribosome C
IDA
AthAt2g34480
At3g14600
GO:0003674 molecular_function F
ND
MmuMGI:1924058
GO:0003723 RNA binding F
TAS
HsaRPL18A
GO:0003735 structural constituent of ribosome F
ISS
AthAt2g34480
At3g14600
AT1G29965
TAS
SceS000004855
S000005839
GO:0005515 protein binding F
IPI
HsaRPL18A
GO:0000003 reproduction P
IMP
CelWBGene00004432
GO:0002119 nematode larval development P
IMP
CelWBGene00004432
GO:0006412 translation P
ISS
AthAt2g34480
At3g14600
AT1G29965
TAS
HsaRPL18A
SceS000005839
S000004855
GO:0006414 translational elongation P
EXP
HsaRPL18A
GO:0006417 regulation of translation P
RCA
SceS000004855
S000005839
GO:0008150 biological_process P
ND
MmuMGI:1924058
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004432
GO:0040007 growth P
IMP
CelWBGene00004432
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004432
GO:0042254 ribosome biogenesis P
ISS
AthAt2g34480
At3g14600
AT1G29965

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1034

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga9485 ENSANGP00000016619
Ashbya gossypii (Ago) ago3522 AFR330C
Arabidopsis thaliana (Ath) ath3130 At1g29965.1
Arabidopsis thaliana (Ath) ath10495 At2g34480.1
Arabidopsis thaliana (Ath) ath13664 At3g14600.1
Caenorhabditis elegans (Cel) cel5298 E04A4.8
(CE21392;
WBGene00004432)
Candida glabrata (Cgl) cgl3840 CAGL0K07414g
Cryptococcus neoformans (Cne) cne3915 185.m02501
Dictyostelium discoideum (Ddi) ddi7810 DDB0186729
Debaryomyces hansenii (Dha) dha5836 DEHA0G03138
Drosophila melanogaster (Dme) dme5674 CG6510-PA
(FBgn0010409)
Danio rerio (Dre) dre31128 ENSDARP00000038658
(rpl18a)		 Q7ZWJ4
Danio rerio (Dre) dre17895 ENSDARP00000042940
Danio rerio (Dre) dre17894 ENSDARP00000044272
Encephalitozoon cuniculi (Ecu) ecu217 19173386
Takifugu rubripes (Fru) fru3328 SINFRUP00000147981
Gallus gallus (Gga) gga428 ENSGALP00000015964
(RPL18A)
Homo sapiens (Hsa) hsa15917 ENSP00000222247
(RPL18A)		 Q02543
Homo sapiens (Hsa) hsa8089 ENSP00000345843
Homo sapiens (Hsa) hsa17788 ENSP00000348088
Kluyveromyces lactis (Kla) kla4473 KLLA0F08657g
Mus musculus (Mmu) mmu26143 ENSMUSP00000058368
(MGI:1924058)		 P62717
Neurospora crassa (Ncr) ncr8176 NCU08389.2
Oryza sativa (Osa) osa12223 2815.m00177
Oryza sativa (Osa) osa31932 4396.m00160
Oryza sativa (Osa) osa32077 4399.m00178
Oryza sativa (Osa) osa35254 4726.m00197
Oryza sativa (Osa) osa39703 4999.m00090
Plasmodium falciparum (Pfa) pfa4408 PF13_0224
Rattus norvegicus (Rno) rno12199 ENSRNOP00000025421
(RGD:1302976)		 P62718
Saccharomyces cerevisiae (Sce) sce5012 YMR242C
(S000004855)
Saccharomyces cerevisiae (Sce) sce6061 YOR312C
(S000005839)
Schizosaccharomyces pombe (Spo) spo4593 SPAC26A3.04 P05732
Schizosaccharomyces pombe (Spo) spo2457 SPAC3A12.10 P05732
Yarrowia lipolytica (Yli) yli6357 YALI0F24123g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1924058
GO:0005730 nucleolus C
IDA
SpoSPAC26A3.04
GO:0005829 cytosol C
IDA
SpoSPAC26A3.04
SPAC3A12.10
GO:0005840 ribosome C
ISS
AthAt2g34480
At3g14600
AT1G29965
NAS
DmeFBgn0010409
GO:0005886 plasma membrane C
IDA
AthAt2g34480
GO:0016020 membrane C
IDA
AthAt3g14600
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt2g34480
At3g14600
AT1G29965
ISS
DmeFBgn0010409
PfaPF13_0224
SpoSPAC3A12.10
SPAC26A3.04
TAS
SceS000004855
S000005839
GO:0022626 cytosolic ribosome C
IDA
AthAt2g34480
At3g14600
GO:0003674 molecular_function F
ND
MmuMGI:1924058
GO:0003735 structural constituent of ribosome F
ISS
AthAt2g34480
At3g14600
AT1G29965
DmeFBgn0010409
SpoSPAC26A3.04
SPAC3A12.10
NAS
DmeFBgn0010409
TAS
SceS000004855
S000005839
GO:0000003 reproduction P
IMP
CelWBGene00004432
GO:0000022 mitotic spindle elongation P
IMP
DmeFBgn0010409
GO:0002119 nematode larval development P
IMP
CelWBGene00004432
GO:0006412 translation P
ISS
AthAt2g34480
At3g14600
AT1G29965
DmeFBgn0010409
SpoSPAC26A3.04
SPAC3A12.10
TAS
SceS000005839
S000004855
GO:0006417 regulation of translation P
RCA
SceS000004855
S000005839
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0010409
GO:0008150 biological_process P
ND
MmuMGI:1924058
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004432
GO:0040007 growth P
IMP
CelWBGene00004432
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004432
GO:0042254 ribosome biogenesis P
ISS
AthAt2g34480
At3g14600
AT1G29965

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC26A3.04
(P05732)		 YMR242C
(S000004855)
SPAC3A12.10
(P05732)		 YMR242C
(S000004855)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
SpoSPAC26A3.04
GO:0005829 cytosol C
IDA
SpoSPAC26A3.04
SPAC3A12.10
GO:0022625 cytosolic large ribosomal subunit C
ISS
SpoSPAC3A12.10
SPAC26A3.04
TAS
SceS000004855
GO:0003735 structural constituent of ribosome F
ISS
SpoSPAC26A3.04
SPAC3A12.10
TAS
SceS000004855
GO:0006412 translation P
ISS
SpoSPAC26A3.04
SPAC3A12.10
TAS
SceS000004855
GO:0006417 regulation of translation P
RCA
SceS000004855

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s.khadayate@ucl.ac.uk