YOGY Home YOGY Help

Search term: YMR285C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name NGL2
SGD link S000004898
Alternative ID YMR285C
Description Protein involved in 5.8S rRNA processing; Ccr4p-like RNase required for correct 3'-end formation of 5.8S rRNA at site E; similar to Ngl1p and Ngl3p
Synonyms YMR285C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2338 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Transcriptional effector CCR4-related protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g02270 GI:18378941
Arabidopsis thaliana (Ath) At3g18500 GI:15229657
Arabidopsis thaliana (Ath) At5g11350 GI:15239026
Caenorhabditis elegans (Cel) CE18318 GI:17565002
Drosophila melanogaster (Dme) 7291622
(FBgn0016762)		 GI:17137276
Homo sapiens (Hsa) Hs14784709 GI:14784709
Homo sapiens (Hsa) Hs21389341 GI:16877441 Q96AL9
Saccharomyces cerevisiae (Sce) YML118w
(S000004587)		 GI:6323517 Q03210
Saccharomyces cerevisiae (Sce) YMR285c
(S000004898)		 GI:6323941 Q03264
Schizosaccharomyces pombe (Spo) SPBC9B6.11c GI:19112545 Q9Y7M8


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g11350
DmeFBgn0016762
SceS000004587
GO:0005622 intracellular C
IDA
SceS000004898
GO:0005634 nucleus C
IDA
AthAt1g02270
SpoSPBC9B6.11c
GO:0005737 cytoplasm C
IDA
SpoSPBC9B6.11c
GO:0005829 cytosol C
IDA
SpoSPBC9B6.11c
GO:0003674 molecular_function F
ND
AthAt3g18500
DmeFBgn0016762
GO:0003824 catalytic activity F
ISS
AthAt5g11350
At1g02270
GO:0004519 endonuclease activity F
ISS
SceS000004587
GO:0004521 endoribonuclease activity F
IMP
SceS000004898
ISS
SceS000004898
SpoSPBC9B6.11c
GO:0005509 calcium ion binding F
ISS
AthAt1g02270
GO:0006364 rRNA processing P
IMP
SceS000004898
ISS
SpoSPBC9B6.11c
GO:0008150 biological_process P
ND
AthAt3g18500
At5g11350
DmeFBgn0016762
SceS000004587
GO:0009409 response to cold P
IEP
AthAt1g02270

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
40008

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPBC9B6.11c GI:19112545 Q9Y7M8
Saccharomyces cerevisiae (Sce) NGL2
(S000004898)		 GI:6323941 Q03264
Kluyveromyces lactis (Kla) KLLA0C06248g GI:50305037
Eremothecium gossypii (Ego) AGOS_ABL118W GI:45185112


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005622 intracellular C
IDA
SceS000004898
GO:0005634 nucleus C
IDA
SpoSPBC9B6.11c
GO:0005737 cytoplasm C
IDA
SpoSPBC9B6.11c
GO:0005829 cytosol C
IDA
SpoSPBC9B6.11c
GO:0004521 endoribonuclease activity F
IMP
SceS000004898
ISS
SceS000004898
SpoSPBC9B6.11c
GO:0006364 rRNA processing P
IMP
SceS000004898
ISS
SpoSPBC9B6.11c

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_9330

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago474 ABL118W
Candida glabrata (Cgl) cgl308 CAGL0B02387g
Candida glabrata (Cgl) cgl2638 CAGL0I02684g
Cryptococcus neoformans (Cne) cne1787 164.m02208
Debaryomyces hansenii (Dha) dha293 DEHA0A06633g
Danio rerio (Dre) dre8659 ENSDARP00000029734
Kluyveromyces lactis (Kla) kla1475 KLLA0C06248g
Saccharomyces cerevisiae (Sce) sce4728 YML118W
(S000004587)
Saccharomyces cerevisiae (Sce) sce5059 YMR285C
(S000004898)
Schizosaccharomyces pombe (Spo) spo1919 SPBC9B6.11c Q9Y7M8
Yarrowia lipolytica (Yli) yli2071 YALI0C08657g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
SceS000004587
GO:0005622 intracellular C
IDA
SceS000004898
GO:0005634 nucleus C
IDA
SpoSPBC9B6.11c
GO:0005737 cytoplasm C
IDA
SpoSPBC9B6.11c
GO:0005829 cytosol C
IDA
SpoSPBC9B6.11c
GO:0004519 endonuclease activity F
ISS
SceS000004587
GO:0004521 endoribonuclease activity F
IMP
SceS000004898
ISS
SceS000004898
SpoSPBC9B6.11c
GO:0006364 rRNA processing P
IMP
SceS000004898
ISS
SpoSPBC9B6.11c
GO:0008150 biological_process P
ND
SceS000004587

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC9B6.11c
(Q9Y7M8)		 YMR285C
(S000004898)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005622 intracellular C
IDA
SceS000004898
GO:0005634 nucleus C
IDA
SpoSPBC9B6.11c
GO:0005737 cytoplasm C
IDA
SpoSPBC9B6.11c
GO:0005829 cytosol C
IDA
SpoSPBC9B6.11c
GO:0004521 endoribonuclease activity F
IMP
SceS000004898
ISS
SceS000004898
SpoSPBC9B6.11c
GO:0006364 rRNA processing P
IMP
SceS000004898
ISS
SpoSPBC9B6.11c

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk