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Search term: YMR290C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name HAS1
SGD link S000004903
Alternative ID YMR290C
Description ATP-dependent RNA helicase; localizes to both the nuclear periphery and nucleolus; highly enriched in nuclear pore complex fractions; constituent of 66S pre-ribosomal particles
Synonyms YMR290C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0342 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING ATP-dependent RNA helicase pitchoune

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g63250 GI:15221724
Arabidopsis thaliana (Ath) At2g07750 GI:15226161
Arabidopsis thaliana (Ath) At2g37920_2 GI:4895192
Arabidopsis thaliana (Ath) At3g18600 GI:15229677
Arabidopsis thaliana (Ath) At5g08610 GI:15242321
Arabidopsis thaliana (Ath) At5g08620 GI:15242323
Arabidopsis thaliana (Ath) At5g63630 GI:15242854
Arabidopsis thaliana (Ath) At5g65900 GI:15239187
Caenorhabditis elegans (Cel) CE26853
(WBGene00015232)		 GI:17505370 O61815
Drosophila melanogaster (Dme) 7300808 GI:13124440
Homo sapiens (Hsa) Hs13787206 GI:13787206
Homo sapiens (Hsa) Hs17436931 GI:17436931
Homo sapiens (Hsa) Hs22041318 GI:22041318
Homo sapiens (Hsa) Hs22054507 GI:22054507
Homo sapiens (Hsa) Hs22070384 GI:22070384
Saccharomyces cerevisiae (Sce) YDR194c
(S000002602)		 GI:6320400 P15424
Saccharomyces cerevisiae (Sce) YMR290c
(S000004903)		 GI:6323947 Q03532
Schizosaccharomyces pombe (Spo) SPAC1F7.02c GI:19115400 Q09916
Schizosaccharomyces pombe (Spo) SPBC691.04 GI:19112388 O13622
Arabidopsis thaliana (Ath) At1g63250 GI:15221724
Arabidopsis thaliana (Ath) At2g07750 GI:15226161
Arabidopsis thaliana (Ath) At2g37920_2 GI:4895192
Arabidopsis thaliana (Ath) At3g18600 GI:15229677
Arabidopsis thaliana (Ath) At5g08610 GI:15242321
Arabidopsis thaliana (Ath) At5g08620 GI:15242323
Arabidopsis thaliana (Ath) At5g63630 GI:15242854
Arabidopsis thaliana (Ath) At5g65900 GI:15239187
Caenorhabditis elegans (Cel) CE26853
(WBGene00015232)		 GI:17505370 O61815
Drosophila melanogaster (Dme) 7300808 GI:13124440
Homo sapiens (Hsa) Hs13787206 GI:13787206
Homo sapiens (Hsa) Hs17436931 GI:17436931
Homo sapiens (Hsa) Hs22041318 GI:22041318
Homo sapiens (Hsa) Hs22054507 GI:22054507
Homo sapiens (Hsa) Hs22070384 GI:22070384
Saccharomyces cerevisiae (Sce) YDR194c
(S000002602)		 GI:6320400 P15424
Saccharomyces cerevisiae (Sce) YMR290c
(S000004903)		 GI:6323947 Q03532
Schizosaccharomyces pombe (Spo) SPAC1F7.02c GI:19115400 Q09916
Schizosaccharomyces pombe (Spo) SPBC691.04 GI:19112388 O13622
Arabidopsis thaliana (Ath) At1g63250 GI:15221724
Arabidopsis thaliana (Ath) At2g07750 GI:15226161
Arabidopsis thaliana (Ath) At2g37920_2 GI:4895192
Arabidopsis thaliana (Ath) At3g18600 GI:15229677
Arabidopsis thaliana (Ath) At5g08610 GI:15242321
Arabidopsis thaliana (Ath) At5g08620 GI:15242323
Arabidopsis thaliana (Ath) At5g63630 GI:15242854
Arabidopsis thaliana (Ath) At5g65900 GI:15239187
Caenorhabditis elegans (Cel) CE26853
(WBGene00015232)		 GI:17505370 O61815
Drosophila melanogaster (Dme) 7300808 GI:13124440
Homo sapiens (Hsa) Hs13787206 GI:13787206
Homo sapiens (Hsa) Hs17436931 GI:17436931
Homo sapiens (Hsa) Hs22041318 GI:22041318
Homo sapiens (Hsa) Hs22054507 GI:22054507
Homo sapiens (Hsa) Hs22070384 GI:22070384
Saccharomyces cerevisiae (Sce) YDR194c
(S000002602)		 GI:6320400 P15424
Saccharomyces cerevisiae (Sce) YMR290c
(S000004903)		 GI:6323947 Q03532
Schizosaccharomyces pombe (Spo) SPAC1F7.02c GI:19115400 Q09916
Schizosaccharomyces pombe (Spo) SPBC691.04 GI:19112388 O13622


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g63250
At5g65900
At5g63630
At5g08620
GO:0005634 nucleus C
IDA
SpoSPAC1F7.02c
GO:0005635 nuclear envelope C
IDA
SceS000004903
GO:0005730 nucleolus C
IDA
AthAt3g18600
SceS000004903
SpoSPAC1F7.02c
GO:0005739 mitochondrion C
IDA
SceS000002602
SpoSPBC691.04
GO:0005759 mitochondrial matrix C
IMP
SceS000002602
ISS
SpoSPBC691.04
GO:0009507 chloroplast C
IDA
AthAt5g08610
GO:0030686 90S preribosome C
IDA
SceS000004903
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000004903
GO:0003723 RNA binding F
IDA
AthAt5g08620
SceS000002602
S000004903
ISS
SpoSPAC1F7.02c
GO:0004004 ATP-dependent RNA helicase activity F
IDA
SceS000002602
S000004903
ISS
SpoSPAC1F7.02c
SPBC691.04
GO:0005375 copper ion transmembrane transporter
activity		 F
ISS
AthAt2g37920
GO:0005524 ATP binding F
ISS
SpoSPBC691.04
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt1g63250
At5g08610
At3g18600
At5g65900
At5g08620
At2g07750
At5g63630
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000004903
GO:0033592 RNA strand annealing activity F
IDA
SceS000002602
GO:0000027 ribosomal large subunit assembly P
RCA
SceS000004903
GO:0000372 Group I intron splicing P
IMP
SceS000002602
GO:0000373 Group II intron splicing P
IDA
SceS000002602
IMP
SceS000002602
GO:0002119 nematode larval development P
IMP
CelWBGene00015232
GO:0006364 rRNA processing P
IMP
SceS000004903
ISS
SpoSPAC1F7.02c
GO:0008150 biological_process P
ND
AthAt5g63630
At1g63250
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00015232
GO:0008380 RNA splicing P
ISS
SpoSPBC691.04
GO:0009409 response to cold P
IEP
AthAt5g08620
GO:0009414 response to water deprivation P
IMP
AthAt5g08620
GO:0009651 response to salt stress P
IMP
AthAt5g08620
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt2g37920
GO:0032543 mitochondrial translation P
NAS
SpoSPBC691.04
GO:0040007 growth P
IMP
CelWBGene00015232
GO:0042255 ribosome assembly P
RCA
SceS000004903
GO:0042257 ribosomal subunit assembly P
RCA
SceS000004903

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6697

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DDX18 GI:38327634
Pan troglodytes (Ptr) DDX18 GI:114580554
Canis familiaris (Cfa) DDX18 GI:73984192
Mus musculus (Mmu) Ddx18
(MGI:1914192)		 GI:31981163 B2RUM8
Rattus norvegicus (Rno) Ddx18
(RGD:1549712)		 GI:55741498
Gallus gallus (Gga) DDX18 GI:50750746
Drosophila melanogaster (Dme) pit
(FBgn0025140)		 GI:28571808
Anopheles gambiae (Aga) AgaP_AGAP008601 GI:158293341
Caenorhabditis elegans (Cel) helicase GI:17505370 O61815
Schizosaccharomyces pombe (Spo) SPAC1F7.02c GI:19115400 Q09916
Saccharomyces cerevisiae (Sce) HAS1
(S000004903)		 GI:6323947 Q03532
Kluyveromyces lactis (Kla) KLLA0A09669g GI:50302969
Eremothecium gossypii (Ego) AGOS_AGR333C GI:45201429
Magnaporthe grisea (Mgr) MGG_06522 GI:39977239
Neurospora crassa (Ncr) NCU09349.1 GI:32423207
Arabidopsis thaliana (Ath) AT5G65900 GI:15239187
Arabidopsis thaliana (Ath) AT3G18600 GI:15229677
Oryza sativa (Osa) Os03g0802700 GI:115456005
Plasmodium falciparum (Pfa) PFF1500c GI:86171847


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g65900
MmuMGI:1914192
GO:0005634 nucleus C
IDA
SpoSPAC1F7.02c
NAS
DmeFBgn0025140
GO:0005635 nuclear envelope C
IDA
SceS000004903
GO:0005730 nucleolus C
IDA
AthAt3g18600
SceS000004903
SpoSPAC1F7.02c
NAS
DmeFBgn0025140
GO:0030686 90S preribosome C
IDA
SceS000004903
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000004903
GO:0003674 molecular_function F
ND
MmuMGI:1914192
GO:0003723 RNA binding F
IDA
SceS000004903
ISS
SpoSPAC1F7.02c
GO:0003724 RNA helicase activity F
ISS
DmeFBgn0025140
GO:0004004 ATP-dependent RNA helicase activity F
IDA
SceS000004903
ISS
DmeFBgn0025140
PfaPFF1500c
SpoSPAC1F7.02c
NAS
DmeFBgn0025140
TAS
HsaDDX18
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt3g18600
At5g65900
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000004903
GO:0000027 ribosomal large subunit assembly P
RCA
SceS000004903
GO:0006364 rRNA processing P
IMP
SceS000004903
ISS
SpoSPAC1F7.02c
GO:0008150 biological_process P
ND
MmuMGI:1914192
GO:0016070 RNA metabolic process P
ISS
PfaPFF1500c
GO:0042255 ribosome assembly P
RCA
SceS000004903
GO:0042257 ribosomal subunit assembly P
RCA
SceS000004903

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1863

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga10623 ENSANGP00000013137
Ashbya gossypii (Ago) ago4644 AGR333C
Arabidopsis thaliana (Ath) ath14129 At3g18600.1
Arabidopsis thaliana (Ath) ath28748 At5g65900.1
Caenorhabditis elegans (Cel) cel581 B0511.6
(CE26853;
WBGene00015232)
Candida glabrata (Cgl) cgl5245 CAGL0M13519g
Cryptococcus neoformans (Cne) cne4673 186.m03524
Dictyostelium discoideum (Ddi) ddi6802 DDB0204960
Debaryomyces hansenii (Dha) dha6667 DEHA0G21659g
Drosophila melanogaster (Dme) dme13786 CG6375-PA
(FBgn0025140)
Drosophila melanogaster (Dme) dme13785 CG6375-PB
(FBgn0025140)
Danio rerio (Dre) dre3046 ENSDARP00000048752
(LOC573149)
Danio rerio (Dre) dre3047 ENSDARP00000050292
Takifugu rubripes (Fru) fru26396 SINFRUP00000136232
Takifugu rubripes (Fru) fru26395 SINFRUP00000171871
Takifugu rubripes (Fru) fru26394 SINFRUP00000175640
Gallus gallus (Gga) gga21908 ENSGALP00000019814
(DDX18)
Homo sapiens (Hsa) hsa18499 ENSP00000263239
(DDX18)		 Q9NVP1
Kluyveromyces lactis (Kla) kla419 KLLA0A09669g
Mus musculus (Mmu) mmu962 ENSMUSP00000001724
(MGI:1914192)		 Q8K363
Neurospora crassa (Ncr) ncr9109 NCU09349.2
Oryza sativa (Osa) osa53297 5957.m00158
Oryza sativa (Osa) osa64382 6706.m00171
Plasmodium falciparum (Pfa) pfa3195 PFF1500c
Rattus norvegicus (Rno) rno8988 ENSRNOP00000028172
(RGD:1549712)
Rattus norvegicus (Rno) rno8987 ENSRNOP00000038728
(RGD:1549712)		 Q5XHY0
Saccharomyces cerevisiae (Sce) sce5064 YMR290C
(S000004903)
Schizosaccharomyces pombe (Spo) spo3358 SPAC1F7.02c Q09916
Yarrowia lipolytica (Yli) yli3932 YALI0E01782g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g65900
MmuMGI:1914192
GO:0005634 nucleus C
IDA
SpoSPAC1F7.02c
NAS
DmeFBgn0025140
GO:0005635 nuclear envelope C
IDA
SceS000004903
GO:0005730 nucleolus C
IDA
AthAt3g18600
SceS000004903
SpoSPAC1F7.02c
NAS
DmeFBgn0025140
GO:0030686 90S preribosome C
IDA
SceS000004903
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000004903
GO:0003674 molecular_function F
ND
MmuMGI:1914192
GO:0003723 RNA binding F
IDA
SceS000004903
ISS
SpoSPAC1F7.02c
GO:0003724 RNA helicase activity F
ISS
DmeFBgn0025140
GO:0004004 ATP-dependent RNA helicase activity F
IDA
SceS000004903
ISS
DmeFBgn0025140
PfaPFF1500c
SpoSPAC1F7.02c
NAS
DmeFBgn0025140
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt3g18600
At5g65900
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000004903
GO:0000027 ribosomal large subunit assembly P
RCA
SceS000004903
GO:0002119 nematode larval development P
IMP
CelWBGene00015232
GO:0006364 rRNA processing P
IMP
SceS000004903
ISS
SpoSPAC1F7.02c
GO:0008150 biological_process P
ND
MmuMGI:1914192
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00015232
GO:0016070 RNA metabolic process P
ISS
PfaPFF1500c
GO:0040007 growth P
IMP
CelWBGene00015232
GO:0042255 ribosome assembly P
RCA
SceS000004903
GO:0042257 ribosomal subunit assembly P
RCA
SceS000004903

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC1F7.02c
(Q09916)		 YMR290C
(S000004903)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC1F7.02c
GO:0005635 nuclear envelope C
IDA
SceS000004903
GO:0005730 nucleolus C
IDA
SceS000004903
SpoSPAC1F7.02c
GO:0030686 90S preribosome C
IDA
SceS000004903
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000004903
GO:0003723 RNA binding F
IDA
SceS000004903
ISS
SpoSPAC1F7.02c
GO:0004004 ATP-dependent RNA helicase activity F
IDA
SceS000004903
ISS
SpoSPAC1F7.02c
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000004903
GO:0000027 ribosomal large subunit assembly P
RCA
SceS000004903
GO:0006364 rRNA processing P
IMP
SceS000004903
ISS
SpoSPAC1F7.02c
GO:0042255 ribosome assembly P
RCA
SceS000004903
GO:0042257 ribosomal subunit assembly P
RCA
SceS000004903

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