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Search term: YMR309C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name NIP1
SGD link S000004926
Alternative ID YMR309C
Description eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), involved in the assembly of preinitiation complex and start codon selection
Synonyms YMR309C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1076 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Translation initiation factor 3, subunit c (eIF-3c)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g22860 GI:15228885
Arabidopsis thaliana (Ath) At3g56150 GI:15228840
Caenorhabditis elegans (Cel) CE18958
(WBGene00001226)		 GI:17509197 O02328
Drosophila melanogaster (Dme) 7302740
(FBgn0034258)		 GI:19922464
Homo sapiens (Hsa) Hs4503525
(EIF3C)		 GI:4503525 Q99613
Saccharomyces cerevisiae (Sce) YMR309c
(S000004926)		 GI:6323969 P32497
Schizosaccharomyces pombe (Spo) SPAC4A8.16c GI:19114740 O14164
Arabidopsis thaliana (Ath) At3g22860 GI:15228885
Arabidopsis thaliana (Ath) At3g56150 GI:15228840
Caenorhabditis elegans (Cel) CE18958
(WBGene00001226)		 GI:17509197 O02328
Drosophila melanogaster (Dme) 7302740
(FBgn0034258)		 GI:19922464
Homo sapiens (Hsa) Hs4503525
(EIF3C)		 GI:4503525 Q99613
Saccharomyces cerevisiae (Sce) YMR309c
(S000004926)		 GI:6323969 P32497
Schizosaccharomyces pombe (Spo) SPAC4A8.16c GI:19114740 O14164


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt3g56150
GO:0005737 cytoplasm C
IDA
SceS000004926
GO:0005829 cytosol C
EXP
HsaEIF3C
IDA
AthAt3g56150
SpoSPAC4A8.16c
ISS
DmeFBgn0034258
GO:0005852 eukaryotic translation initiation factor 3
complex		 C
IDA
HsaEIF3C
SceS000004926
IPI
SceS000004926
ISS
AthAt3g22860
DmeFBgn0034258
GO:0010494 stress granule C
IDA
SceS000004926
GO:0043614 multi-eIF complex C
IDA
SceS000004926
GO:0071540 eukaryotic translation initiation factor 3
complex, eIF3e		 C
IDA
SpoSPAC4A8.16c
GO:0071541 eukaryotic translation initiation factor 3
complex, eIF3m		 C
IDA
SpoSPAC4A8.16c
GO:0003743 translation initiation factor activity F
IC
HsaEIF3C
SpoSPAC4A8.16c
IDA
HsaEIF3C
SceS000004926
ISS
AthAt3g56150
At3g22860
DmeFBgn0034258
GO:0005515 protein binding F
IPI
HsaEIF3C
GO:0000003 reproduction P
IMP
CelWBGene00001226
GO:0006413 translational initiation P
IC
HsaEIF3C
IDA
HsaEIF3C
SceS000004926
IGI
SceS000004926
IMP
SceS000004926
ISS
AthAt3g22860
DmeFBgn0034258
NAS
SpoSPAC4A8.16c
GO:0006417 regulation of translation P
RCA
SceS000004926

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
2781

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) EIF3C GI:4503525 Q99613
Homo sapiens (Hsa) EIF3CL GI:153791492
Canis familiaris (Cfa) EIF3C GI:73958588
Mus musculus (Mmu) Eif3c
(MGI:1926966)		 GI:22203755 P97398
Rattus norvegicus (Rno) Eif3c GI:109459395
Gallus gallus (Gga) EIF3C GI:118112064
Drosophila melanogaster (Dme) eIF3-S8
(FBgn0034258)		 GI:19922464
Anopheles gambiae (Aga) AgaP_AGAP004725 GI:158297996
Caenorhabditis elegans (Cel) eif-3.C
(CE18958;
WBGene00001226)		 GI:17509197 O02328
Schizosaccharomyces pombe (Spo) tif33
(SPAC4A8.16c)		 GI:63054571 O14164
Saccharomyces cerevisiae (Sce) NIP1
(S000004926)		 GI:6323969 P32497
Kluyveromyces lactis (Kla) KLLA0F03014g GI:50310393
Eremothecium gossypii (Ego) AGOS_AGL344C GI:45200753
Magnaporthe grisea (Mgr) MGG_05243 GI:39939994
Neurospora crassa (Ncr) NCU07831.1 GI:32416118
Arabidopsis thaliana (Ath) EIF3C GI:15228840
Oryza sativa (Osa) Os07g0124500 GI:115470411
Oryza sativa (Osa) Os02g0123300 GI:115443907
Plasmodium falciparum (Pfa) PFL0310c GI:124805548


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SceS000004926
GO:0005829 cytosol C
EXP
HsaEIF3C
IDA
SpoSPAC4A8.16c
ISS
DmeFBgn0034258
GO:0005852 eukaryotic translation initiation factor 3
complex		 C
IDA
HsaEIF3C
MmuMGI:1926966
SceS000004926
IPI
SceS000004926
ISS
DmeFBgn0034258
GO:0010494 stress granule C
IDA
SceS000004926
GO:0043614 multi-eIF complex C
IDA
SceS000004926
GO:0071540 eukaryotic translation initiation factor 3
complex, eIF3e		 C
IDA
SpoSPAC4A8.16c
GO:0071541 eukaryotic translation initiation factor 3
complex, eIF3m		 C
IDA
SpoSPAC4A8.16c
GO:0003743 translation initiation factor activity F
IC
HsaEIF3C
SpoSPAC4A8.16c
IDA
HsaEIF3C
MmuMGI:1926966
SceS000004926
ISS
DmeFBgn0034258
GO:0005515 protein binding F
IPI
HsaEIF3C
GO:0043022 ribosome binding F
ISO
MmuMGI:1926966
GO:0000003 reproduction P
IMP
CelWBGene00001226
GO:0006413 translational initiation P
IC
HsaEIF3C
IDA
HsaEIF3C
MmuMGI:1926966
SceS000004926
IGI
SceS000004926
IMP
SceS000004926
ISS
DmeFBgn0034258
NAS
SpoSPAC4A8.16c
GO:0006417 regulation of translation P
RCA
SceS000004926
GO:0006446 regulation of translational initiation P
ISS
PfaPFL0310c
GO:0045948 positive regulation of translational
initiation		 P
IDA
MmuMGI:1926966

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1706

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga61 ENSANGP00000017513
Ashbya gossypii (Ago) ago3968 AGL344C
Arabidopsis thaliana (Ath) ath14599 At3g22860.1
Arabidopsis thaliana (Ath) ath17005 At3g56150.1
Caenorhabditis elegans (Cel) cel16113 T23D8.4
(CE18958;
WBGene00001226)
Candida glabrata (Cgl) cgl5262 CAGL0M13893g
Cryptococcus neoformans (Cne) cne2965 167.m03259
Dictyostelium discoideum (Ddi) ddi5033 DDB0205040
Debaryomyces hansenii (Dha) dha5841 DEHA0G03234g
Drosophila melanogaster (Dme) dme5698 CG4954-PA
(FBgn0034258)
Danio rerio (Dre) dre9911 ENSDARP00000011344
(eif3s8)		 Q6PFQ2
Takifugu rubripes (Fru) fru19075 SINFRUP00000144501
Takifugu rubripes (Fru) fru19080 SINFRUP00000144512
Takifugu rubripes (Fru) fru19081 SINFRUP00000168608
Takifugu rubripes (Fru) fru19078 SINFRUP00000168786
Takifugu rubripes (Fru) fru19079 SINFRUP00000171405
Takifugu rubripes (Fru) fru19076 SINFRUP00000173816
Takifugu rubripes (Fru) fru19077 SINFRUP00000174407
Homo sapiens (Hsa) hsa11900 ENSP00000332604
(EIF3C)		 Q99613
Kluyveromyces lactis (Kla) kla4216 KLLA0F03014g
Mus musculus (Mmu) mmu25082 ENSMUSP00000032992
(MGI:1926966)		 Q8R1B4
Neurospora crassa (Ncr) ncr7627 NCU07831.2
Oryza sativa (Osa) osa30047 4295.m00172
Oryza sativa (Osa) osa72018 7046.m00181
Plasmodium falciparum (Pfa) pfa4848 PFL0310c
Rattus norvegicus (Rno) rno2975 ENSRNOP00000025782
(RGD:1308871)		 B5DFC8
Saccharomyces cerevisiae (Sce) sce5088 YMR309C
(S000004926)
Schizosaccharomyces pombe (Spo) spo4704 SPAC4A8.16c O14164
Yarrowia lipolytica (Yli) yli3651 YALI0D22572g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt3g56150
GO:0005737 cytoplasm C
IDA
SceS000004926
GO:0005829 cytosol C
IDA
AthAt3g56150
SpoSPAC4A8.16c
ISS
DmeFBgn0034258
GO:0005852 eukaryotic translation initiation factor 3
complex		 C
IDA
MmuMGI:1926966
SceS000004926
IPI
SceS000004926
ISS
AthAt3g22860
DmeFBgn0034258
GO:0010494 stress granule C
IDA
SceS000004926
GO:0043614 multi-eIF complex C
IDA
SceS000004926
GO:0071540 eukaryotic translation initiation factor 3
complex, eIF3e		 C
IDA
SpoSPAC4A8.16c
GO:0071541 eukaryotic translation initiation factor 3
complex, eIF3m		 C
IDA
SpoSPAC4A8.16c
GO:0003743 translation initiation factor activity F
IC
SpoSPAC4A8.16c
IDA
MmuMGI:1926966
SceS000004926
ISS
AthAt3g56150
At3g22860
DmeFBgn0034258
GO:0043022 ribosome binding F
ISO
MmuMGI:1926966
GO:0000003 reproduction P
IMP
CelWBGene00001226
GO:0006413 translational initiation P
IDA
MmuMGI:1926966
SceS000004926
IGI
SceS000004926
IMP
SceS000004926
ISS
AthAt3g22860
DmeFBgn0034258
NAS
SpoSPAC4A8.16c
GO:0006417 regulation of translation P
RCA
SceS000004926
GO:0006446 regulation of translational initiation P
ISS
PfaPFL0310c
GO:0045948 positive regulation of translational
initiation		 P
IDA
MmuMGI:1926966

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC4A8.16c
(O14164)		 YMR309C
(S000004926)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SceS000004926
GO:0005829 cytosol C
IDA
SpoSPAC4A8.16c
GO:0005852 eukaryotic translation initiation factor 3
complex		 C
IDA
SceS000004926
IPI
SceS000004926
GO:0010494 stress granule C
IDA
SceS000004926
GO:0043614 multi-eIF complex C
IDA
SceS000004926
GO:0071540 eukaryotic translation initiation factor 3
complex, eIF3e		 C
IDA
SpoSPAC4A8.16c
GO:0071541 eukaryotic translation initiation factor 3
complex, eIF3m		 C
IDA
SpoSPAC4A8.16c
GO:0003743 translation initiation factor activity F
IC
SpoSPAC4A8.16c
IDA
SceS000004926
GO:0006413 translational initiation P
IDA
SceS000004926
IGI
SceS000004926
IMP
SceS000004926
NAS
SpoSPAC4A8.16c
GO:0006417 regulation of translation P
RCA
SceS000004926

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Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk