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Search term: YNL025C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SSN8
SGD link S000004970
Alternative ID YNL025C
Description Cyclin-like component of the RNA polymerase II holoenzyme, involved in phosphorylation of the RNA polymerase II C-terminal domain; involved in glucose repression and telomere maintenance
Synonyms YNL025C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0794 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING CDK8 kinase-activating protein cyclin C

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g48630 GI:15239664
Arabidopsis thaliana (Ath) At5g48640 GI:15239665
Caenorhabditis elegans (Cel) CE20970 GI:17553900
Drosophila melanogaster (Dme) 7299935
(FBgn0004597)
GI:17136688
Homo sapiens (Hsa) Hs4885119 GI:4885119
Saccharomyces cerevisiae (Sce) YNL025c
(S000004970)
GI:6324303 P47821
Schizosaccharomyces pombe (Spo) SPBC12D12.06 GI:19112745 O94503
Arabidopsis thaliana (Ath) At5g48630 GI:15239664
Arabidopsis thaliana (Ath) At5g48640 GI:15239665
Caenorhabditis elegans (Cel) CE20970 GI:17553900
Drosophila melanogaster (Dme) 7299935
(FBgn0004597)
GI:17136688
Homo sapiens (Hsa) Hs4885119 GI:4885119
Saccharomyces cerevisiae (Sce) YNL025c
(S000004970)
GI:6324303 P47821
Schizosaccharomyces pombe (Spo) SPBC12D12.06 GI:19112745 O94503


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g48640
GO:0005667 transcription factor complex C
TAS
SceS000004970
GO:0016592 mediator complex C
IDA
DmeFBgn0004597
SpoSPBC12D12.06
ISS
DmeFBgn0004597
RCA
SceS000004970
GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme
complex
C
NAS
DmeFBgn0004597
GO:0003674 molecular_function F
ND
SpoSPBC12D12.06
GO:0004693 cyclin-dependent protein kinase
activity
F
ISS
AthAt5g48630
At5g48640
GO:0005515 protein binding F
IPI
DmeFBgn0004597
GO:0016251 general RNA polymerase II transcription factor
activity
F
TAS
SceS000004970
GO:0016455 RNA polymerase II transcription mediator
activity
F
IMP
DmeFBgn0004597
ISS
DmeFBgn0004597
RCA
SceS000004970
GO:0016538 cyclin-dependent protein kinase regulator
activity
F
IDA
DmeFBgn0004597
ISS
DmeFBgn0004597
NAS
DmeFBgn0004597
TAS
SceS000004970
GO:0000082 G1/S transition of mitotic cell
cycle
P
NAS
DmeFBgn0004597
GO:0000122 negative regulation of transcription from RNA
polymerase II promoter
P
TAS
SceS000004970
GO:0006350 transcription P
RCA
SceS000004970
GO:0006351 transcription, DNA-dependent P
RCA
SceS000004970
GO:0006357 regulation of transcription from RNA polymerase II
promoter
P
IMP
DmeFBgn0004597
GO:0006366 transcription from RNA polymerase II
promoter
P
RCA
SceS000004970
GO:0006367 transcription initiation from RNA polymerase II
promoter
P
ISS
DmeFBgn0004597
GO:0007126 meiosis P
IGI
SceS000004970
IMP
SceS000004970
GO:0009415 response to water P
RCA
SceS000004970
GO:0032569 gene-specific transcription from RNA polymerase II
promoter
P
IC
SpoSPBC12D12.06
GO:0032774 RNA biosynthetic process P
RCA
SceS000004970
GO:0051726 regulation of cell cycle P
ISS
AthAt5g48630
At5g48640

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
101635

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SSN8
(S000004970)
GI:6324303 P47821
Kluyveromyces lactis (Kla) KLLA0E08151g GI:50308633
Eremothecium gossypii (Ego) AGOS_ADL207W GI:45187666
Magnaporthe grisea (Mgr) MGG_01071 GI:39973565
Neurospora crassa (Ncr) NCU01563.1 GI:32415045


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005667 transcription factor complex C
TAS
SceS000004970
GO:0016592 mediator complex C
RCA
SceS000004970
GO:0016251 general RNA polymerase II transcription factor
activity
F
TAS
SceS000004970
GO:0016455 RNA polymerase II transcription mediator
activity
F
RCA
SceS000004970
GO:0016538 cyclin-dependent protein kinase regulator
activity
F
TAS
SceS000004970
GO:0000122 negative regulation of transcription from RNA
polymerase II promoter
P
TAS
SceS000004970
GO:0006350 transcription P
RCA
SceS000004970
GO:0006351 transcription, DNA-dependent P
RCA
SceS000004970
GO:0006366 transcription from RNA polymerase II
promoter
P
RCA
SceS000004970
GO:0007126 meiosis P
IGI
SceS000004970
IMP
SceS000004970
GO:0009415 response to water P
RCA
SceS000004970
GO:0032774 RNA biosynthetic process P
RCA
SceS000004970

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3232

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga6762 ENSANGP00000013964
Ashbya gossypii (Ago) ago1534 ADL207W
Arabidopsis thaliana (Ath) ath26765 At5g48630.1
Arabidopsis thaliana (Ath) ath26766 At5g48640.1
Caenorhabditis elegans (Cel) cel11326 H14E04.5
(CE34571;
WBGene00000506)
Candida glabrata (Cgl) cgl4956 CAGL0M06875g
Cryptococcus neoformans (Cne) cne2164 181.m08181
Dictyostelium discoideum (Ddi) ddi13673 DDB0231775
Debaryomyces hansenii (Dha) dha451 DEHA0A10131g
Drosophila melanogaster (Dme) dme12646 CG7281-PA
(FBgn0004597)
Danio rerio (Dre) dre18024 ENSDARP00000017380
Takifugu rubripes (Fru) fru18663 SINFRUP00000147020
Gallus gallus (Gga) gga15647 ENSGALP00000024901
(CCNC)
P55168
Homo sapiens (Hsa) hsa27526 ENSP00000319027
(CCNC)
B4DPZ1
Kluyveromyces lactis (Kla) kla3318 KLLA0E08151g
Mus musculus (Mmu) mmu17875 ENSMUSP00000029916
(MGI:1858199)
Q62447
Mus musculus (Mmu) mmu17876 ENSMUSP00000050966
(MGI:1858199)
Q497T2
Neurospora crassa (Ncr) ncr1518 NCU01563.2
Oryza sativa (Osa) osa21444 3601.m00263
Rattus norvegicus (Rno) rno22868 ENSRNOP00000010655
(RGD:70905)
Rattus norvegicus (Rno) rno22870 ENSRNOP00000011442
(RGD:70905)
P39947
Rattus norvegicus (Rno) rno22869 ENSRNOP00000048420
(RGD:70905)
Saccharomyces cerevisiae (Sce) sce5134 YNL025C
(S000004970)
Schizosaccharomyces pombe (Spo) spo3801 SPBC12D12.06 O94503
Yarrowia lipolytica (Yli) yli2869 YALI0D04004g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g48640
GO:0005667 transcription factor complex C
TAS
SceS000004970
GO:0016592 mediator complex C
IDA
DmeFBgn0004597
SpoSPBC12D12.06
ISS
DmeFBgn0004597
RCA
SceS000004970
GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme
complex
C
NAS
DmeFBgn0004597
GO:0003674 molecular_function F
ND
SpoSPBC12D12.06
GO:0004693 cyclin-dependent protein kinase
activity
F
ISS
AthAt5g48630
At5g48640
GO:0005515 protein binding F
IPI
DmeFBgn0004597
GO:0016251 general RNA polymerase II transcription factor
activity
F
TAS
SceS000004970
GO:0016455 RNA polymerase II transcription mediator
activity
F
IMP
DmeFBgn0004597
ISS
DmeFBgn0004597
RCA
SceS000004970
GO:0016538 cyclin-dependent protein kinase regulator
activity
F
IDA
DmeFBgn0004597
ISS
DmeFBgn0004597
NAS
DmeFBgn0004597
TAS
SceS000004970
GO:0000082 G1/S transition of mitotic cell
cycle
P
NAS
DmeFBgn0004597
GO:0000122 negative regulation of transcription from RNA
polymerase II promoter
P
TAS
SceS000004970
GO:0006350 transcription P
RCA
SceS000004970
GO:0006351 transcription, DNA-dependent P
RCA
SceS000004970
GO:0006357 regulation of transcription from RNA polymerase II
promoter
P
IMP
DmeFBgn0004597
GO:0006366 transcription from RNA polymerase II
promoter
P
RCA
SceS000004970
GO:0006367 transcription initiation from RNA polymerase II
promoter
P
ISS
DmeFBgn0004597
GO:0007126 meiosis P
IGI
SceS000004970
IMP
SceS000004970
GO:0009415 response to water P
RCA
SceS000004970
GO:0032569 gene-specific transcription from RNA polymerase II
promoter
P
IC
SpoSPBC12D12.06
GO:0032774 RNA biosynthetic process P
RCA
SceS000004970
GO:0051726 regulation of cell cycle P
ISS
AthAt5g48630
At5g48640

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC12D12.06
(O94503)
YNL025C
(S000004970)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005667 transcription factor complex C
TAS
SceS000004970
GO:0016592 mediator complex C
IDA
SpoSPBC12D12.06
RCA
SceS000004970
GO:0003674 molecular_function F
ND
SpoSPBC12D12.06
GO:0016251 general RNA polymerase II transcription factor
activity
F
TAS
SceS000004970
GO:0016455 RNA polymerase II transcription mediator
activity
F
RCA
SceS000004970
GO:0016538 cyclin-dependent protein kinase regulator
activity
F
TAS
SceS000004970
GO:0000122 negative regulation of transcription from RNA
polymerase II promoter
P
TAS
SceS000004970
GO:0006350 transcription P
RCA
SceS000004970
GO:0006351 transcription, DNA-dependent P
RCA
SceS000004970
GO:0006366 transcription from RNA polymerase II
promoter
P
RCA
SceS000004970
GO:0007126 meiosis P
IGI
SceS000004970
IMP
SceS000004970
GO:0009415 response to water P
RCA
SceS000004970
GO:0032569 gene-specific transcription from RNA polymerase II
promoter
P
IC
SpoSPBC12D12.06
GO:0032774 RNA biosynthetic process P
RCA
SceS000004970

Back to the top
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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk