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Search term: YNL044W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name YIP3
SGD link S000004989
Alternative ID YNL044W
Description Protein localized to COPII vesicles, proposed to be involved in ER to Golgi transport; interacts with members of the Rab GTPase family and Yip1p; also interacts with Rtn1p
Synonyms YNL044W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3142 A-DHYPE

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Prenylated rab acceptor 1

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g04260 GI:18379300
Arabidopsis thaliana (Ath) At1g08770 GI:18390939
Arabidopsis thaliana (Ath) At1g17700 GI:15220814
Arabidopsis thaliana (Ath) At1g55190 GI:18405248
Arabidopsis thaliana (Ath) At1g55640 GI:15222754
Arabidopsis thaliana (Ath) At2g38360 GI:15224494
Arabidopsis thaliana (Ath) At2g40380 GI:15226664
Arabidopsis thaliana (Ath) At3g13710 GI:15231332
Arabidopsis thaliana (Ath) At3g13720 GI:18400140
Arabidopsis thaliana (Ath) At3g56110 GI:15228824
Arabidopsis thaliana (Ath) At4g29660 GI:7487097
Arabidopsis thaliana (Ath) At5g01640 GI:15241022
Arabidopsis thaliana (Ath) At5g05380 GI:15239101
Arabidopsis thaliana (Ath) At5g07110 GI:15240698
Arabidopsis thaliana (Ath) At5g56230 GI:15241155
Drosophila melanogaster (Dme) 7303822 GI:7303822 A1Z823
Homo sapiens (Hsa) Hs5453960 GI:5453960
Saccharomyces cerevisiae (Sce) YNL044w
(S000004989)		 GI:6681850 P53633
Schizosaccharomyces pombe (Spo) SPCC306.02c GI:19075310 Q9UUN5
Encephalitozoon cuniculi (Ecu) ECU02g1470 GI:19074066 Q8SW90


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt4g29660
GO:0005737 cytoplasm C
IDA
AthAt1g04260
GO:0005783 endoplasmic reticulum C
IDA
AthAt5g01640
At3g56110
At5g05380
At1g55190
At1g17700
At3g13720
At2g38360
At1g08770
At1g55640
At3g13710
At5g56230
At5g07110
At2g40380
At1g04260
SceS000004989
GO:0005794 Golgi apparatus C
IDA
SceS000004989
GO:0005886 plasma membrane C
IDA
AthAt1g55190
GO:0030134 ER to Golgi transport vesicle C
IDA
SceS000004989
ISS
SpoSPCC306.02c
GO:0003674 molecular_function F
ND
AthAt5g07110
At5g56230
At3g56110
At1g17700
At5g05380
At4g29660
At5g01640
At1g55640
At2g38360
At1g08770
At3g13710
At3g13720
At2g40380
SceS000004989
GO:0005515 protein binding F
IPI
AthAt1g04260
GO:0017137 Rab GTPase binding F
ISS
SpoSPCC306.02c
GO:0006888 ER to Golgi vesicle-mediated transport P
IPI
SceS000004989
ISS
SpoSPCC306.02c
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt4g29660
GO:0016192 vesicle-mediated transport P
IDA
AthAt5g01640
At5g05380
At1g55190
At1g08770
At1g17700
At5g56230
At1g04260
At2g38360
At1g55640
At3g56110
At5g07110
At3g13720
At2g40380
At3g13710
RCA
SceS000004989
GO:0045184 establishment of protein localization P
RCA
SceS000004989
GO:0046739 spread of virus in host P
TAS
AthAt1g04260

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
31885

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPCC306.02c GI:19075310 Q9UUN5
Saccharomyces cerevisiae (Sce) YIP3
(S000004989)		 GI:6681850 P53633
Kluyveromyces lactis (Kla) KLLA0F03905g GI:50310475


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005783 endoplasmic reticulum C
IDA
SceS000004989
GO:0005794 Golgi apparatus C
IDA
SceS000004989
GO:0030134 ER to Golgi transport vesicle C
IDA
SceS000004989
ISS
SpoSPCC306.02c
GO:0003674 molecular_function F
ND
SceS000004989
GO:0017137 Rab GTPase binding F
ISS
SpoSPCC306.02c
GO:0006888 ER to Golgi vesicle-mediated transport P
IPI
SceS000004989
ISS
SpoSPCC306.02c
GO:0016192 vesicle-mediated transport P
RCA
SceS000004989
GO:0045184 establishment of protein localization P
RCA
SceS000004989

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_5044

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga6122 ENSANGP00000027718
Ashbya gossypii (Ago) ago1509 ADL232W
Arabidopsis thaliana (Ath) ath22919 At5g07110.1
Candida glabrata (Cgl) cgl1686 CAGL0G01452g
Cryptococcus neoformans (Cne) cne2337 181.m08361
Dictyostelium discoideum (Ddi) ddi6570 DDB0206263
Debaryomyces hansenii (Dha) dha6435 DEHA0G16478g
Drosophila melanogaster (Dme) dme4193 CG1418-PA
(FBgn0033468)
Danio rerio (Dre) dre9288 ENSDARP00000028630
(zgc:86749)		 Q6TNR4
Encephalitozoon cuniculi (Ecu) ecu145 19074066
Takifugu rubripes (Fru) fru16486 SINFRUP00000130719
Homo sapiens (Hsa) hsa16480 ENSP00000222008
(RABAC1)		 Q9UI14
Kluyveromyces lactis (Kla) kla4257 KLLA0F03905g
Mus musculus (Mmu) mmu23371 ENSMUSP00000076227
(MGI:1201692)		 Q9Z0S9
Neurospora crassa (Ncr) ncr2439 NCU02518.2
Rattus norvegicus (Rno) rno1287 ENSRNOP00000027435
(RGD:621002)		 O35394
Saccharomyces cerevisiae (Sce) sce5154 YNL044W
(S000004989)
Schizosaccharomyces pombe (Spo) spo2994 SPCC306.02c Q9UUN5


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005783 endoplasmic reticulum C
IDA
AthAt5g07110
SceS000004989
GO:0005794 Golgi apparatus C
IDA
MmuMGI:1201692
SceS000004989
GO:0016021 integral to membrane C
IDA
MmuMGI:1201692
GO:0030134 ER to Golgi transport vesicle C
IDA
SceS000004989
ISS
SpoSPCC306.02c
GO:0003674 molecular_function F
ND
AthAt5g07110
SceS000004989
GO:0005515 protein binding F
IPI
MmuMGI:1201692
GO:0017137 Rab GTPase binding F
ISS
DmeFBgn0033468
SpoSPCC306.02c
GO:0006888 ER to Golgi vesicle-mediated transport P
IPI
SceS000004989
ISS
SpoSPCC306.02c
GO:0016192 vesicle-mediated transport P
IDA
AthAt5g07110
RCA
SceS000004989
GO:0045184 establishment of protein localization P
RCA
SceS000004989

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC306.02c
(Q9UUN5)		 YNL044W
(S000004989)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005783 endoplasmic reticulum C
IDA
SceS000004989
GO:0005794 Golgi apparatus C
IDA
SceS000004989
GO:0030134 ER to Golgi transport vesicle C
IDA
SceS000004989
ISS
SpoSPCC306.02c
GO:0003674 molecular_function F
ND
SceS000004989
GO:0017137 Rab GTPase binding F
ISS
SpoSPCC306.02c
GO:0006888 ER to Golgi vesicle-mediated transport P
IPI
SceS000004989
ISS
SpoSPCC306.02c
GO:0016192 vesicle-mediated transport P
RCA
SceS000004989
GO:0045184 establishment of protein localization P
RCA
SceS000004989

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