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Search term: YNL075W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name IMP4
SGD link S000005019
Alternative ID YNL075W
Description Component of the SSU processome, which is required for pre-18S rRNA processing; interacts with Mpp10p; member of a superfamily of proteins that contain a sigma(70)-like motif and associate with RNAs
Synonyms YNL075W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2781 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING U3 small nucleolar ribonucleoprotein (snoRNP) component

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g63780 GI:15222534
Caenorhabditis elegans (Cel) CE18464
(WBGene00014083)		 GI:17544642 O62518
Drosophila melanogaster (Dme) 7301265 GI:7301265
Homo sapiens (Hsa) Hs15529982
(IMP4)		 GI:15529982 Q96G21
Saccharomyces cerevisiae (Sce) YNL075w
(S000005019)		 GI:6324254 P53941
Schizosaccharomyces pombe (Spo) SPAC19A8.07c GI:19114697 O13823
Encephalitozoon cuniculi (Ecu) ECU11g1910 GI:19074991 Q8SQR5


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC19A8.07c
GO:0005730 nucleolus C
IDA
HsaIMP4
SpoSPAC19A8.07c
ISS
SpoSPAC19A8.07c
TAS
AthAt1g63780
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPAC19A8.07c
TAS
AthAt1g63780
GO:0015030 Cajal body C
TAS
AthAt1g63780
GO:0016363 nuclear matrix C
IDA
AthAt1g63780
GO:0030686 90S preribosome C
IDA
SceS000005019
GO:0032040 small-subunit processome C
IDA
SceS000005019
GO:0034457 Mpp10 complex C
IDA
SceS000005019
GO:0003674 molecular_function F
ND
AthAt1g63780
GO:0003723 RNA binding F
ISS
SpoSPAC19A8.07c
GO:0005515 protein binding F
IPI
HsaIMP4
GO:0030515 snoRNA binding F
IDA
SceS000005019
GO:0042134 rRNA primary transcript binding F
IPI
SceS000005019
GO:0043047 single-stranded telomeric DNA binding F
IDA
SceS000005019
GO:0000003 reproduction P
IMP
CelWBGene00014083
GO:0002119 nematode larval development P
IMP
CelWBGene00014083
GO:0006364 rRNA processing P
ISS
SpoSPAC19A8.07c
NAS
HsaIMP4
TAS
AthAt1g63780
SceS000005019
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00014083
GO:0009451 RNA modification P
RCA
SceS000005019
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00014083
GO:0040007 growth P
IMP
CelWBGene00014083
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00014083
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC19A8.07c
GO:0042274 ribosomal small subunit biogenesis P
RCA
SceS000005019

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68891

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) IMP4 GI:15529982 Q96G21
Canis familiaris (Cfa) IMP4 GI:73993566
Mus musculus (Mmu) Imp4
(MGI:106572)		 GI:30519917 Q8VHZ7
Rattus norvegicus (Rno) Imp4
(RGD:1308463)		 GI:57527503
Drosophila melanogaster (Dme) CG11920
(FBgn0039274)		 GI:24649922
Anopheles gambiae (Aga) AgaP_AGAP003890 GI:118777519
Caenorhabditis elegans (Cel) ZK795.3
(CE18464;
WBGene00014083)		 GI:17544642 O62518
Schizosaccharomyces pombe (Spo) SPAC19A8.07c GI:19114697 O13823
Saccharomyces cerevisiae (Sce) IMP4
(S000005019)		 GI:6324254 P53941
Kluyveromyces lactis (Kla) KLLA0E07788g GI:50308599
Eremothecium gossypii (Ego) AGOS_AER430W GI:45191031
Magnaporthe grisea (Mgr) MGG_00977 GI:39973753
Neurospora crassa (Ncr) NCU04243.1 GI:32405940
Arabidopsis thaliana (Ath) IMP4 GI:15222534
Oryza sativa (Osa) Os08g0155000 GI:115474843
Plasmodium falciparum (Pfa) PF08_0055 GI:124512408


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC19A8.07c
GO:0005730 nucleolus C
IDA
HsaIMP4
SpoSPAC19A8.07c
ISA
MmuMGI:106572
ISS
SpoSPAC19A8.07c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
PfaPF08_0055
SpoSPAC19A8.07c
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0039274
GO:0030686 90S preribosome C
IDA
SceS000005019
GO:0032040 small-subunit processome C
IDA
SceS000005019
GO:0034457 Mpp10 complex C
IDA
SceS000005019
GO:0003723 RNA binding F
ISA
MmuMGI:106572
ISS
SpoSPAC19A8.07c
GO:0005515 protein binding F
IPI
HsaIMP4
GO:0030515 snoRNA binding F
IDA
SceS000005019
GO:0030519 snoRNP binding F
ISA
MmuMGI:106572
GO:0042134 rRNA primary transcript binding F
IPI
SceS000005019
GO:0043047 single-stranded telomeric DNA binding F
IDA
SceS000005019
GO:0000003 reproduction P
IMP
CelWBGene00014083
GO:0002119 nematode larval development P
IMP
CelWBGene00014083
GO:0006364 rRNA processing P
ISS
SpoSPAC19A8.07c
NAS
HsaIMP4
TAS
MmuMGI:106572
SceS000005019
GO:0006396 RNA processing P
ISS
PfaPF08_0055
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00014083
GO:0009451 RNA modification P
RCA
SceS000005019
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00014083
GO:0040007 growth P
IMP
CelWBGene00014083
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00014083
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC19A8.07c
GO:0042274 ribosomal small subunit biogenesis P
RCA
SceS000005019

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2376

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga6395 ENSANGP00000017149
Ashbya gossypii (Ago) ago2930 AER430W
Arabidopsis thaliana (Ath) ath5583 At1g63780.1
Caenorhabditis elegans (Cel) cel22229 ZK795.3
(CE18464;
WBGene00014083)
Candida glabrata (Cgl) cgl3442 CAGL0J10252g
Cryptococcus neoformans (Cne) cne3398 167.m05944
Debaryomyces hansenii (Dha) dha475 DEHA0A10626g
Drosophila melanogaster (Dme) dme14368 CG11920-PA
(FBgn0039274)
Danio rerio (Dre) dre19135 ENSDARP00000003916
Encephalitozoon cuniculi (Ecu) ecu1079 19074991
Takifugu rubripes (Fru) fru8020 SINFRUP00000129804
Homo sapiens (Hsa) hsa18595 ENSP00000259239
(IMP4)		 Q96G21
Kluyveromyces lactis (Kla) kla3301 KLLA0E07788g
Mus musculus (Mmu) mmu169 ENSMUSP00000027303
(MGI:106572)		 Q8VHZ7
Neurospora crassa (Ncr) ncr4119 NCU04243.2
Oryza sativa (Osa) osa69690 7085.m00049
Plasmodium falciparum (Pfa) pfa2149 PF08_0055
Rattus norvegicus (Rno) rno29854 ENSRNOP00000017897
Rattus norvegicus (Rno) rno29855 ENSRNOP00000041951
(RGD:1308463)		 Q6TXI2
Saccharomyces cerevisiae (Sce) sce5188 YNL075W
(S000005019)
Schizosaccharomyces pombe (Spo) spo3034 SPAC19A8.07c O13823
Yarrowia lipolytica (Yli) yli3704 YALI0D23859g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC19A8.07c
GO:0005730 nucleolus C
IDA
SpoSPAC19A8.07c
ISA
MmuMGI:106572
ISS
SpoSPAC19A8.07c
TAS
AthAt1g63780
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
PfaPF08_0055
SpoSPAC19A8.07c
TAS
AthAt1g63780
GO:0015030 Cajal body C
TAS
AthAt1g63780
GO:0016363 nuclear matrix C
IDA
AthAt1g63780
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0039274
GO:0030686 90S preribosome C
IDA
SceS000005019
GO:0032040 small-subunit processome C
IDA
SceS000005019
GO:0034457 Mpp10 complex C
IDA
SceS000005019
GO:0003674 molecular_function F
ND
AthAt1g63780
GO:0003723 RNA binding F
ISA
MmuMGI:106572
ISS
SpoSPAC19A8.07c
GO:0030515 snoRNA binding F
IDA
SceS000005019
GO:0030519 snoRNP binding F
ISA
MmuMGI:106572
GO:0042134 rRNA primary transcript binding F
IPI
SceS000005019
GO:0043047 single-stranded telomeric DNA binding F
IDA
SceS000005019
GO:0000003 reproduction P
IMP
CelWBGene00014083
GO:0002119 nematode larval development P
IMP
CelWBGene00014083
GO:0006364 rRNA processing P
ISS
SpoSPAC19A8.07c
TAS
AthAt1g63780
MmuMGI:106572
SceS000005019
GO:0006396 RNA processing P
ISS
PfaPF08_0055
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00014083
GO:0009451 RNA modification P
RCA
SceS000005019
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00014083
GO:0040007 growth P
IMP
CelWBGene00014083
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00014083
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC19A8.07c
GO:0042274 ribosomal small subunit biogenesis P
RCA
SceS000005019

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC19A8.07c
(O13823)		 YNL075W
(S000005019)