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Search term: YNL113W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPC19
SGD link S000005057
Alternative ID YNL113W
Description RNA polymerase subunit AC19, common to RNA polymerases I and III
Synonyms YNL113W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3438 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING DNA-directed RNA polymerase, subunit L

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g29540 GI:15227556
Caenorhabditis elegans (Cel) CE00225
(WBGene00010230)		 GI:17553746 P34476
Drosophila melanogaster (Dme) 7298551 GI:7298551
Homo sapiens (Hsa) Hs7705740
(POLR1D)		 GI:7705740 Q9Y2S0
Saccharomyces cerevisiae (Sce) YNL113w
(S000005057)		 GI:6324215 P28000
Schizosaccharomyces pombe (Spo) SPAC1687.01 GI:19114031 Q09177
Encephalitozoon cuniculi (Ecu) ECU11g0590 GI:19074859 Q8SQY2


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005654 nucleoplasm C
EXP
HsaPOLR1D
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
AthAt2g29540
SceS000005057
IGI
SpoSPAC1687.01
ISS
AthAt2g29540
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
SceS000005057
IGI
SpoSPAC1687.01
GO:0003677 DNA binding F
ISS
AthAt2g29540
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000005057
IGI
SpoSPAC1687.01
ISS
AthAt2g29540
GO:0006360 transcription from RNA polymerase I
promoter		 P
IC
SceS000005057
IGI
SpoSPAC1687.01
RCA
SceS000005057
GO:0006383 transcription from RNA polymerase III
promoter		 P
IGI
SpoSPAC1687.01
RCA
SceS000005057
GO:0009304 tRNA transcription P
TAS
AthAt2g29540
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IDA
SceS000005057

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
22239

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) POLR1D GI:7705740 Q9Y2S0
Mus musculus (Mmu) Polr1d
(MGI:108403)		 GI:6677791 P97304
Gallus gallus (Gga) POLR1D GI:118089544
Schizosaccharomyces pombe (Spo) SPAPYUL23.01 GI:63054500
Saccharomyces cerevisiae (Sce) RPC19
(S000005057)		 GI:6324215 P28000
Kluyveromyces lactis (Kla) KLLA0F23760g GI:50312213
Eremothecium gossypii (Ego) AGOS_AFL220C GI:45198301
Magnaporthe grisea (Mgr) MGG_06311 GI:145608868
Neurospora crassa (Ncr) NCU00419.1 GI:32403784


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005654 nucleoplasm C
EXP
HsaPOLR1D
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
SceS000005057
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
MmuMGI:108403
SceS000005057
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000005057
GO:0005515 protein binding F
IPI
MmuMGI:108403
GO:0006360 transcription from RNA polymerase I
promoter		 P
IC
SceS000005057
RCA
SceS000005057
GO:0006383 transcription from RNA polymerase III
promoter		 P
RCA
SceS000005057
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IDA
SceS000005057

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2703

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga11839 ENSANGP00000022241
Ashbya gossypii (Ago) ago2975 AFL220C
Arabidopsis thaliana (Ath) ath9923 At2g29540.1
Caenorhabditis elegans (Cel) cel10839 F58A4.9
(CE00225;
WBGene00010230)
Candida glabrata (Cgl) cgl4246 CAGL0L03872g
Cryptococcus neoformans (Cne) cne4702 186.m03558
Dictyostelium discoideum (Ddi) ddi13576 DDB0216286
Debaryomyces hansenii (Dha) dha599 DEHA0A13409g
Drosophila melanogaster (Dme) dme2947 CG10685-PA
(FBgn0032762)
Danio rerio (Dre) dre4932 ENSDARP00000018459
Encephalitozoon cuniculi (Ecu) ecu947 19074859
Homo sapiens (Hsa) hsa8609 ENSP00000302478
(POLR1D)		 Q9Y2S0-1
Kluyveromyces lactis (Kla) kla5138 KLLA0F23760g
Mus musculus (Mmu) mmu21337 ENSMUSP00000058355
(MGI:108403)		 P97304
Neurospora crassa (Ncr) ncr405 NCU00419.2
Oryza sativa (Osa) osa68601 7023.m00119
Oryza sativa (Osa) osa79025 7398.m00141
Plasmodium falciparum (Pfa) pfa1513 PF14_0150
Rattus norvegicus (Rno) rno8013 ENSRNOP00000001262
(RGD:1564358)
Saccharomyces cerevisiae (Sce) sce5229 YNL113W
(S000005057)
Schizosaccharomyces pombe (Spo) spo2907 SPAC1687.01 Q09177
Yarrowia lipolytica (Yli) yli5002 YALI0E27676g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
PfaPF14_0150
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
AthAt2g29540
SceS000005057
IGI
SpoSPAC1687.01
ISS
AthAt2g29540
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
MmuMGI:108403
SceS000005057
IGI
SpoSPAC1687.01
GO:0003677 DNA binding F
ISS
AthAt2g29540
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000005057
IGI
SpoSPAC1687.01
ISS
AthAt2g29540
GO:0005515 protein binding F
IPI
MmuMGI:108403
GO:0006360 transcription from RNA polymerase I
promoter		 P
IC
SceS000005057
IGI
SpoSPAC1687.01
RCA
SceS000005057
GO:0006383 transcription from RNA polymerase III
promoter		 P
IGI
SpoSPAC1687.01
RCA
SceS000005057
GO:0009304 tRNA transcription P
TAS
AthAt2g29540
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IDA
SceS000005057

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC1687.01
(Q09177)		 YNL113W
(S000005057)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
SceS000005057
IGI
SpoSPAC1687.01
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
SceS000005057
IGI
SpoSPAC1687.01
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000005057
IGI
SpoSPAC1687.01
GO:0006360 transcription from RNA polymerase I
promoter		 P
IC
SceS000005057
IGI
SpoSPAC1687.01
RCA
SceS000005057
GO:0006383 transcription from RNA polymerase III
promoter		 P
IGI
SpoSPAC1687.01
RCA
SceS000005057
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IDA
SceS000005057

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