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Search term: YNL138W-A

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name YSF3
SGD link S000028509
Alternative ID YNL138W-A
Description Component of the SF3b subcomplex of the U2 snRNP, essential protein required for for splicing and for assembly of SF3b
Synonyms YNL138W-A
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3373

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga9050 ENSANGP00000021330
Ashbya gossypii (Ago) ago3251 AFR059W
Arabidopsis thaliana (Ath) ath14653 At3g23325.1
Arabidopsis thaliana (Ath) ath19213 At4g14342.1
Cryptococcus neoformans (Cne) cne5867 179.m05152
Dictyostelium discoideum (Ddi) ddi4266 DDB0202854
Debaryomyces hansenii (Dha) dha4887 DEHA0F11363g
Drosophila melanogaster (Dme) dme11622 CG11985-PA
(FBgn0040534)
Danio rerio (Dre) dre4222 ENSDARP00000016634
(sf3b5)		 Q6ZM78
Takifugu rubripes (Fru) fru4747 SINFRUP00000136967
Homo sapiens (Hsa) hsa27865 ENSP00000302004
Mus musculus (Mmu) mmu1844 ENSMUSP00000077860
Neurospora crassa (Ncr) ncr1944 NCU02000.2
Oryza sativa (Osa) osa24315 3795.m00190
Plasmodium falciparum (Pfa) pfa3812 PF13_0296
Rattus norvegicus (Rno) rno154 ENSRNOP00000019994
(RGD:1586993)
Saccharomyces cerevisiae (Sce) sce5256 YNL138W-A
(S000028509)
Schizosaccharomyces pombe (Spo) spo3079 SPBC211.05 Q9P7R6
Yarrowia lipolytica (Yli) yli545 YALI0A16566g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt4g14342
At3g23325
GO:0005634 nucleus C
IDA
SpoSPBC211.05
ISS
DmeFBgn0040534
GO:0005681 spliceosomal complex C
ISS
SpoSPBC211.05
GO:0005686 U2 snRNP C
IDA
SceS000028509
S000028509
GO:0005829 cytosol C
IDA
SpoSPBC211.05
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0040534
GO:0003674 molecular_function F
ND
AthAt4g14342
At3g23325
SceS000028509
SpoSPBC211.05
GO:0000245 spliceosome assembly P
IMP
SceS000028509
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0040534
IPI
SceS000028509
ISS
AthAt4g14342
DmeFBgn0040534
SpoSPBC211.05
GO:0006397 mRNA processing P
ISS
AthAt3g23325
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0040534

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC211.05
(Q9P7R6)		 YNL138W-A
(S000028509)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC211.05
GO:0005681 spliceosomal complex C
ISS
SpoSPBC211.05
GO:0005686 U2 snRNP C
IDA
SceS000028509
S000028509
GO:0005829 cytosol C
IDA
SpoSPBC211.05
GO:0003674 molecular_function F
ND
SceS000028509
SpoSPBC211.05
GO:0000245 spliceosome assembly P
IMP
SceS000028509
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000028509
ISS
SpoSPBC211.05

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