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Search term: YNL147W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name LSM7
SGD link S000005091
Alternative ID YNL147W
Description Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA
Synonyms YNL147W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1781 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Small Nuclear ribonucleoprotein splicing factor

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g03870 GI:15227722
Caenorhabditis elegans (Cel) CE06628
(WBGene00003081)		 GI:17544592 Q23543
Drosophila melanogaster (Dme) 7298334
(FBgn0032599)		 GI:20129565
Homo sapiens (Hsa) Hs7706423
(LSM7)		 GI:7706423 O75243
Saccharomyces cerevisiae (Sce) YNL147w
(S000005091)		 GI:6324182
Schizosaccharomyces pombe (Spo) SPCC285.12 GI:19075840 O74499


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
RCA
SceS000005091
GO:0005634 nucleus C
IDA
SpoSPCC285.12
ISS
AthAt2g03870
NAS
HsaLSM7
GO:0005681 spliceosomal complex C
NAS
SpoSPCC285.12
GO:0005688 U6 snRNP C
IDA
SceS000005091
ISS
SpoSPCC285.12
GO:0005730 nucleolus C
IDA
SceS000005091
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000005091
ISS
AthAt2g03870
GO:0005737 cytoplasm C
IDA
SceS000005091
GO:0005829 cytosol C
IDA
SpoSPCC285.12
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000005091
ISS
SpoSPCC285.12
NAS
SceS000005091
GO:0003674 molecular_function F
ND
AthAt2g03870
GO:0003723 RNA binding F
IPI
SceS000005091
ISS
SpoSPCC285.12
TAS
SceS000005091
GO:0005515 protein binding F
IPI
HsaLSM7
GO:0017070 U6 snRNA binding F
NAS
HsaLSM7
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000005091
ISS
SpoSPCC285.12
NAS
HsaLSM7
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
IMP
SceS000005091
IPI
SceS000005091
GO:0002119 nematode larval development P
IMP
CelWBGene00003081
GO:0006402 mRNA catabolic process P
ISS
SpoSPCC285.12
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00003081
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003081
GO:0030490 maturation of SSU-rRNA P
IMP
SceS000005091
ISS
SpoSPCC285.12
GO:0040007 growth P
IMP
CelWBGene00003081

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6781

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) LSM7 GI:7706423 O75243
Pan troglodytes (Ptr) LSM7 GI:114674535
Canis familiaris (Cfa) LSM7 GI:73987505
Mus musculus (Mmu) Lsm7
(MGI:1913344)		 GI:13384714 Q9CQQ8
Mus musculus (Mmu) Gm10146 GI:149260998
Rattus norvegicus (Rno) Lsm7 GI:34862278
Gallus gallus (Gga) LSM7 GI:57530588
Drosophila melanogaster (Dme) CG13277
(FBgn0032599)		 GI:20129565
Anopheles gambiae (Aga) AgaP_AGAP008122 GI:118789320
Caenorhabditis elegans (Cel) lsm-7
(CE06628;
WBGene00003081)		 GI:17544592 Q23543
Schizosaccharomyces pombe (Spo) lsm7
(SPCC285.12)		 GI:19075840 O74499
Saccharomyces cerevisiae (Sce) LSM7
(S000005091)		 GI:158267618
Kluyveromyces lactis (Kla) KLLA0E22968g GI:50309941
Eremothecium gossypii (Ego) AGOS_AFR053C GI:45198571
Magnaporthe grisea (Mgr) MGG_02938 GI:39970943
Neurospora crassa (Ncr) NCU01930.1 GI:32417284
Arabidopsis thaliana (Ath) AT2G03870 GI:15227722
Oryza sativa (Osa) Os08g0177700 GI:115475055
Plasmodium falciparum (Pfa) PFL0460w GI:124805657


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
RCA
SceS000005091
GO:0005634 nucleus C
IDA
SpoSPCC285.12
ISS
AthAt2g03870
PfaPFL0460w
NAS
HsaLSM7
GO:0005681 spliceosomal complex C
ISS
PfaPFL0460w
NAS
SpoSPCC285.12
GO:0005688 U6 snRNP C
IDA
SceS000005091
ISS
SpoSPCC285.12
GO:0005730 nucleolus C
IDA
SceS000005091
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000005091
ISS
AthAt2g03870
PfaPFL0460w
GO:0005737 cytoplasm C
IDA
SceS000005091
ISO
MmuMGI:1913344
GO:0005829 cytosol C
IDA
SpoSPCC285.12
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000005091
ISS
SpoSPCC285.12
NAS
SceS000005091
GO:0003674 molecular_function F
ND
AthAt2g03870
GO:0003723 RNA binding F
IPI
SceS000005091
ISS
SpoSPCC285.12
TAS
SceS000005091
GO:0005515 protein binding F
IPI
HsaLSM7
MmuMGI:1913344
GO:0017070 U6 snRNA binding F
NAS
HsaLSM7
GO:0046982 protein heterodimerization activity F
ISO
MmuMGI:1913344
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000005091
ISS
PfaPFL0460w
SpoSPCC285.12
NAS
HsaLSM7
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
IMP
SceS000005091
IPI
SceS000005091
GO:0002119 nematode larval development P
IMP
CelWBGene00003081
GO:0006402 mRNA catabolic process P
ISO
MmuMGI:1913344
ISS
SpoSPCC285.12
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00003081
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003081
GO:0030490 maturation of SSU-rRNA P
IMP
SceS000005091
ISS
SpoSPCC285.12
GO:0040007 growth P
IMP
CelWBGene00003081

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2454

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga10099 ENSANGP00000010565
Ashbya gossypii (Ago) ago3245 AFR053C
Arabidopsis thaliana (Ath) ath7794 At2g03870.1
Arabidopsis thaliana (Ath) ath7795 At2g03870.2
Caenorhabditis elegans (Cel) cel22017 ZK593.7
(CE06628;
WBGene00003081)
Candida glabrata (Cgl) cgl3241 CAGL0J05764g
Dictyostelium discoideum (Ddi) ddi8153 DDB0188448
Debaryomyces hansenii (Dha) dha3693 DEHA0E10222
Debaryomyces hansenii (Dha) dha3694 DEHA0E10230g
Drosophila melanogaster (Dme) dme2668 CG13277-PA
(FBgn0032599)
Danio rerio (Dre) dre14169 ENSDARP00000047663
Danio rerio (Dre) dre14200 ENSDARP00000048695
Takifugu rubripes (Fru) fru27675 SINFRUP00000127322
Homo sapiens (Hsa) hsa15273 ENSP00000252622
(LSM7)		 Q9UK45
Kluyveromyces lactis (Kla) kla3983 KLLA0E22968g
Mus musculus (Mmu) mmu2542 ENSMUSP00000044993
(MGI:1913344)		 Q9CQQ8
Mus musculus (Mmu) mmu2409 ENSMUSP00000071938
Mus musculus (Mmu) mmu14020 ENSMUSP00000072521
(MGI:1913344)		 Q9CQQ8
Neurospora crassa (Ncr) ncr1879 NCU01930.2
Oryza sativa (Osa) osa15579 3040.m00136
Oryza sativa (Osa) osa26225 3921.m00123
Plasmodium falciparum (Pfa) pfa4878 PFL0460w
Rattus norvegicus (Rno) rno26226 ENSRNOP00000026551
(RGD:1305354)
Saccharomyces cerevisiae (Sce) sce5267 YNL147W
(S000005091)
Schizosaccharomyces pombe (Spo) spo1319 SPCC285.12 O74499


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
RCA
SceS000005091
GO:0005634 nucleus C
IDA
SpoSPCC285.12
ISS
AthAt2g03870
PfaPFL0460w
GO:0005681 spliceosomal complex C
ISS
PfaPFL0460w
NAS
SpoSPCC285.12
GO:0005688 U6 snRNP C
IDA
SceS000005091
ISS
SpoSPCC285.12
GO:0005730 nucleolus C
IDA
SceS000005091
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000005091
ISS
AthAt2g03870
PfaPFL0460w
GO:0005737 cytoplasm C
IDA
SceS000005091
ISO
MmuMGI:1913344
GO:0005829 cytosol C
IDA
SpoSPCC285.12
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000005091
ISS
SpoSPCC285.12
NAS
SceS000005091
GO:0003674 molecular_function F
ND
AthAt2g03870
GO:0003723 RNA binding F
IPI
SceS000005091
ISS
SpoSPCC285.12
TAS
SceS000005091
GO:0005515 protein binding F
IPI
MmuMGI:1913344
GO:0046982 protein heterodimerization activity F
ISO
MmuMGI:1913344
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000005091
ISS
PfaPFL0460w
SpoSPCC285.12
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
IMP
SceS000005091
IPI
SceS000005091
GO:0002119 nematode larval development P
IMP
CelWBGene00003081
GO:0006402 mRNA catabolic process P
ISO
MmuMGI:1913344
ISS
SpoSPCC285.12
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00003081
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003081
GO:0030490 maturation of SSU-rRNA P
IMP
SceS000005091
ISS
SpoSPCC285.12
GO:0040007 growth P
IMP
CelWBGene00003081

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC285.12
(O74499)		 YNL147W
(S000005091)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
RCA
SceS000005091
GO:0005634 nucleus C
IDA
SpoSPCC285.12
GO:0005681 spliceosomal complex C
NAS
SpoSPCC285.12
GO:0005688 U6 snRNP C
IDA
SceS000005091
ISS
SpoSPCC285.12
GO:0005730 nucleolus C
IDA
SceS000005091
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000005091
GO:0005737 cytoplasm C
IDA
SceS000005091
GO:0005829 cytosol C
IDA
SpoSPCC285.12
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000005091
ISS
SpoSPCC285.12
NAS
SceS000005091
GO:0003723 RNA binding F
IPI
SceS000005091
ISS
SpoSPCC285.12
TAS
SceS000005091
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000005091
ISS
SpoSPCC285.12
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
IMP
SceS000005091
IPI
SceS000005091
GO:0006402 mRNA catabolic process P
ISS
SpoSPCC285.12
GO:0030490 maturation of SSU-rRNA P
IMP
SceS000005091
ISS
SpoSPCC285.12

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk