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Search term: YNL162W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPL42A
SGD link S000005106
Alternative ID YNL162W
Description Protein component of the large (60S) ribosomal subunit, identical to Rpl42Bp and has similarity to rat L44 ribosomal protein
Synonyms YNL162W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3464 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING 60S ribosomal protein L44

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g23390 GI:15229438
Arabidopsis thaliana (Ath) At4g14320 GI:15236469
Caenorhabditis elegans (Cel) CE02131
(WBGene00004454)		 GI:17531725 P48166
Drosophila melanogaster (Dme) 7297335 GI:20129351
Homo sapiens (Hsa) Hs10445223 GI:9845295
Homo sapiens (Hsa) Hs17437316 GI:17437316
Homo sapiens (Hsa) Hs17442298 GI:17442298
Homo sapiens (Hsa) Hs18573385_2 GI:18573385
Homo sapiens (Hsa) Hs18601762 GI:18601762
Homo sapiens (Hsa) Hs20555200 GI:20555200
Homo sapiens (Hsa) Hs22047108 GI:22047108
Homo sapiens (Hsa) Hs22048689 GI:22048689
Homo sapiens (Hsa) Hs22058363 GI:22058363
Homo sapiens (Hsa) Hs22065075 GI:22065075
Homo sapiens (Hsa) Hs22065135 GI:22065135
Homo sapiens (Hsa) Hs22066131 GI:22066131
Homo sapiens (Hsa) Hs22066175_1 GI:22066175
Homo sapiens (Hsa) Hs4506651
(RPL36AL)		 GI:4506651 Q969Q0
Saccharomyces cerevisiae (Sce) YHR141c
(S000001183)		 GI:6321934 P02405
Saccharomyces cerevisiae (Sce) YNL162w
(S000005106)		 GI:6681849 P02405
Schizosaccharomyces pombe (Spo) SPAC15E1.03 GI:19115216 Q9UTI8
Encephalitozoon cuniculi (Ecu) ECU10g1300 GI:19074739 Q8SR18


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005829 cytosol C
IDA
SpoSPAC15E1.03
GO:0005840 ribosome C
ISS
AthAt4g14320
At3g23390
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt4g14320
At3g23390
ISS
SpoSPAC15E1.03
TAS
SceS000001183
S000005106
GO:0003735 structural constituent of ribosome F
ISS
AthAt4g14320
At3g23390
SpoSPAC15E1.03
TAS
SceS000001183
S000005106
GO:0000003 reproduction P
IMP
CelWBGene00004454
GO:0002119 nematode larval development P
IMP
CelWBGene00004454
GO:0006412 translation P
ISS
AthAt4g14320
At3g23390
SpoSPAC15E1.03
TAS
SceS000005106
S000001183
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004454
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00004454
GO:0040007 growth P
IMP
CelWBGene00004454
GO:0040018 positive regulation of multicellular organism
growth		 P
IMP
CelWBGene00004454
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004454

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
776

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RPL36AL GI:4506651 Q969Q0
Pan troglodytes (Ptr) RPL36AL GI:114652881
Canis familiaris (Cfa) RPL36AL GI:57090125
Rattus norvegicus (Rno) Rpl36al GI:13592061
Rattus norvegicus (Rno) Rpl36a
(RGD:621156)		 GI:27731749
Rattus norvegicus (Rno) Rpl36a-ps1 GI:62643486
Rattus norvegicus (Rno) Rpl36a-ps2 GI:109488407
Drosophila melanogaster (Dme) RpL36A
(FBgn0031980)		 GI:24582672
Anopheles gambiae (Aga) AgaP_AGAP003538 GI:118783847
Caenorhabditis elegans (Cel) rpl-41
(CE02131;
WBGene00004454)		 GI:17531725 P48166
Schizosaccharomyces pombe (Spo) rpl36a
(SPAC15E1.03)		 GI:19115216 Q9UTI8
Saccharomyces cerevisiae (Sce) RPL42A
(S000005106)		 GI:6681849 P02405
Saccharomyces cerevisiae (Sce) RPL42B
(S000001183)		 GI:6321934 P02405
Kluyveromyces lactis (Kla) KLLA0D07832g GI:50306873
Eremothecium gossypii (Ego) AGOS_AFR034W GI:45198552
Magnaporthe grisea (Mgr) MGG_00546 GI:145611252
Neurospora crassa (Ncr) NCU00706.1 GI:32408813
Arabidopsis thaliana (Ath) AT3G23390 GI:15229438
Arabidopsis thaliana (Ath) AT4G14320 GI:15236469
Oryza sativa (Osa) Os07g0450000 GI:115471897
Oryza sativa (Osa) Os07g0523100 GI:115472435
Plasmodium falciparum (Pfa) PFC0200w GI:124504755


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005829 cytosol C
IDA
SpoSPAC15E1.03
GO:0005840 ribosome C
ISS
AthAt4g14320
At3g23390
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt4g14320
At3g23390
ISS
DmeFBgn0031980
PfaPFC0200w
SpoSPAC15E1.03
TAS
SceS000001183
S000005106
GO:0003735 structural constituent of ribosome F
ISS
AthAt4g14320
At3g23390
DmeFBgn0031980
SpoSPAC15E1.03
TAS
SceS000001183
S000005106
GO:0000003 reproduction P
IMP
CelWBGene00004454
GO:0000022 mitotic spindle elongation P
IMP
DmeFBgn0031980
GO:0002119 nematode larval development P
IMP
CelWBGene00004454
GO:0006412 translation P
ISS
AthAt4g14320
At3g23390
DmeFBgn0031980
SpoSPAC15E1.03
TAS
SceS000005106
S000001183
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0031980
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004454
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00004454
GO:0040007 growth P
IMP
CelWBGene00004454
GO:0040018 positive regulation of multicellular organism
growth		 P
IMP
CelWBGene00004454
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004454

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_727

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago3226 AFR034W
Arabidopsis thaliana (Ath) ath14660 At3g23390.1
Arabidopsis thaliana (Ath) ath19210 At4g14320.1
Caenorhabditis elegans (Cel) cel1690 C09H10.2
(CE02131;
WBGene00004454)
Candida glabrata (Cgl) cgl1881 CAGL0G05940g
Dictyostelium discoideum (Ddi) ddi11748 DDB0231154
Debaryomyces hansenii (Dha) dha5003 DEHA0F13937g
Drosophila melanogaster (Dme) dme1346 CG7424-PA
(FBgn0031980)
Danio rerio (Dre) dre18808 ENSDARP00000024618
Encephalitozoon cuniculi (Ecu) ecu655 19074739
Takifugu rubripes (Fru) fru9464 SINFRUP00000156782
Gallus gallus (Gga) gga16725 ENSGALP00000007927
Homo sapiens (Hsa) hsa9483 ENSP00000346012
(RPL36AL)		 Q969Q0
Homo sapiens (Hsa) hsa33106 ENSP00000346013
Kluyveromyces lactis (Kla) kla2411 KLLA0D07832g
Mus musculus (Mmu) mmu5776 ENSMUSP00000059766
(MGI:1201789)		 P83882
Mus musculus (Mmu) mmu22943 ENSMUSP00000074765
Mus musculus (Mmu) mmu16831 ENSMUSP00000080648
Neurospora crassa (Ncr) ncr684 NCU00706.2
Oryza sativa (Osa) osa3195 2009.m00146
Oryza sativa (Osa) osa3197 2009.m00148
Oryza sativa (Osa) osa3198 2009.m00149
Oryza sativa (Osa) osa3201 2009.m00150
Oryza sativa (Osa) osa39090 5086.m00052
Oryza sativa (Osa) osa70732 7149.m00192
Oryza sativa (Osa) osa70733 7149.m00193
Oryza sativa (Osa) osa70734 7149.m00194
Oryza sativa (Osa) osa70738 7149.m00196
Oryza sativa (Osa) osa70743 7149.m00199
Oryza sativa (Osa) osa70748 7149.m00201
Oryza sativa (Osa) osa70752 7149.m00204
Oryza sativa (Osa) osa70755 7149.m00206
Plasmodium falciparum (Pfa) pfa2698 PFC0200w
Rattus norvegicus (Rno) rno31976 ENSRNOP00000015292
Rattus norvegicus (Rno) rno8914 ENSRNOP00000039301
Rattus norvegicus (Rno) rno5418 ENSRNOP00000042127
(RGD:1566373)
Rattus norvegicus (Rno) rno16093 ENSRNOP00000045722
Rattus norvegicus (Rno) rno25193 ENSRNOP00000049014
(RGD:1566235)		 P83883
Saccharomyces cerevisiae (Sce) sce2911 YHR141C
(S000001183)
Saccharomyces cerevisiae (Sce) sce5282 YNL162W
(S000005106)
Schizosaccharomyces pombe (Spo) spo2539 SPAC15E1.03 Q9UTI8
Yarrowia lipolytica (Yli) yli914 YALI0B04224g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1201789
GO:0005829 cytosol C
IDA
SpoSPAC15E1.03
GO:0005840 ribosome C
ISS
AthAt4g14320
At3g23390
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt4g14320
At3g23390
ISS
DmeFBgn0031980
PfaPFC0200w
SpoSPAC15E1.03
TAS
SceS000001183
S000005106
GO:0003674 molecular_function F
ND
MmuMGI:1201789
GO:0003735 structural constituent of ribosome F
ISS
AthAt4g14320
At3g23390
DmeFBgn0031980
SpoSPAC15E1.03
TAS
SceS000001183
S000005106
GO:0000003 reproduction P
IMP
CelWBGene00004454
GO:0000022 mitotic spindle elongation P
IMP
DmeFBgn0031980
GO:0002119 nematode larval development P
IMP
CelWBGene00004454
GO:0006412 translation P
ISS
AthAt4g14320
At3g23390
DmeFBgn0031980
SpoSPAC15E1.03
TAS
SceS000005106
S000001183
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0031980
GO:0008150 biological_process P
ND
MmuMGI:1201789
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004454
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00004454
GO:0040007 growth P
IMP
CelWBGene00004454
GO:0040018 positive regulation of multicellular organism
growth		 P
IMP
CelWBGene00004454
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004454

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC15E1.03
(Q9UTI8)		 YNL162W
(S000005106)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005829 cytosol C
IDA
SpoSPAC15E1.03
GO:0022625 cytosolic large ribosomal subunit C
ISS
SpoSPAC15E1.03
TAS
SceS000005106
GO:0003735 structural constituent of ribosome F
ISS
SpoSPAC15E1.03
TAS
SceS000005106
GO:0006412 translation P
ISS
SpoSPAC15E1.03
TAS
SceS000005106

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Search for gene by ID or name:

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GO info in one table:

s.khadayate@ucl.ac.uk