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Search term: YNL175C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name NOP13
SGD link S000005119
Alternative ID YNL175C
Description Nucleolar protein found in preribosomal complexes; contains an RNA recognition motif (RRM)
Synonyms YNL175C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4210 A---YP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Nuclear localization sequence binding protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g48920 GI:15222009
Arabidopsis thaliana (Ath) At1g72800 GI:18410189
Arabidopsis thaliana (Ath) At1g73490 GI:15219480
Arabidopsis thaliana (Ath) At2g24550 GI:15224161
Arabidopsis thaliana (Ath) At3g03170 GI:6714420
Arabidopsis thaliana (Ath) At3g18610 GI:15229678
Arabidopsis thaliana (Ath) At3g43850 GI:15229793
Arabidopsis thaliana (Ath) At4g08760_1 GI:15236604
Arabidopsis thaliana (Ath) At4g31510 GI:15235970
Arabidopsis thaliana (Ath) At5g24890 GI:15238642
Arabidopsis thaliana (Ath) At5g51730 GI:15242166
Arabidopsis thaliana (Ath) At5g56550 GI:15241248
Saccharomyces cerevisiae (Sce) YGR159c
(S000003391)		 GI:6321599 P27476
Saccharomyces cerevisiae (Sce) YNL175c
(S000005119)		 GI:6324155 P53883
Schizosaccharomyces pombe (Spo) SPAC140.02 GI:19114443 P41891
Schizosaccharomyces pombe (Spo) SPAC3G6.04 GI:19115882 Q09100


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g51730
At4g08760
At1g72800
At1g73490
At2g24550
At5g24890
At3g03170
GO:0005634 nucleus C
IDA
SceS000003391
SpoSPAC3G6.04
GO:0005730 nucleolus C
IDA
AthAt1g48920
SceS000005119
SpoSPAC3G6.04
SPAC140.02
ISS
SpoSPAC3G6.04
TAS
SceS000003391
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPAC140.02
GO:0005739 mitochondrion C
IDA
SceS000003391
GO:0005773 vacuole C
IDA
AthAt3g43850
GO:0016607 nuclear speck C
IDA
AthAt5g56550
GO:0030684 preribosome C
IDA
SceS000005119
GO:0003674 molecular_function F
ND
AthAt5g24890
At5g51730
At4g31510
At2g24550
At3g43850
At4g08760
At5g56550
GO:0003676 nucleic acid binding F
ISS
AthAt1g48920
At3g18610
GO:0003697 single-stranded DNA binding F
IDA
SceS000003391
GO:0003723 RNA binding F
IDA
SceS000003391
ISS
AthAt1g73490
SceS000005119
S000003391
SpoSPAC3G6.04
TAS
SpoSPAC140.02
GO:0000028 ribosomal small subunit assembly P
TAS
SceS000003391
GO:0000478 endonucleolytic cleavage involved in rRNA
processing		 P
IMP
AthAt1g48920
GO:0006364 rRNA processing P
IMP
AthAt1g48920
SpoSPAC140.02
ISS
SpoSPAC3G6.04
TAS
SceS000003391
GO:0006950 response to stress P
IMP
AthAt5g56550
GO:0006979 response to oxidative stress P
IMP
AthAt5g56550
GO:0007000 nucleolus organization P
IMP
SpoSPAC140.02
GO:0008150 biological_process P
ND
AthAt5g24890
At4g31510
At1g72800
At5g51730
At4g08760
At1g73490
At2g24550
At3g43850
SceS000005119
GO:0010305 leaf vascular tissue pattern formation P
IMP
AthAt1g48920
GO:0010588 cotyledon vascular tissue pattern
formation		 P
IMP
AthAt1g48920
GO:0042254 ribosome biogenesis P
IMP
SpoSPAC140.02
TAS
AthAt1g48920
GO:0046686 response to cadmium ion P
IMP
AthAt5g56550
GO:0048364 root development P
IMP
AthAt1g48920
GO:0048366 leaf development P
IMP
AthAt1g48920
GO:0048367 shoot development P
IMP
AthAt1g48920
GO:0080056 petal vascular tissue pattern formation P
IMP
AthAt1g48920
GO:0080057 sepal vascular tissue pattern formation P
IMP
AthAt1g48920

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
40089

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) rnp24
(SPAC3G6.04)		 GI:19115882 Q09100
Saccharomyces cerevisiae (Sce) NOP13
(S000005119)		 GI:6324155 P53883
Kluyveromyces lactis (Kla) KLLA0D08206g GI:50306903
Eremothecium gossypii (Ego) AGOS_ABL134C GI:45185096
Magnaporthe grisea (Mgr) MGG_00985 GI:39973737
Neurospora crassa (Ncr) NCU04273.1 GI:32406000


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC3G6.04
GO:0005730 nucleolus C
IDA
SceS000005119
SpoSPAC3G6.04
ISS
SpoSPAC3G6.04
GO:0030684 preribosome C
IDA
SceS000005119
GO:0003723 RNA binding F
ISS
SceS000005119
SpoSPAC3G6.04
GO:0006364 rRNA processing P
ISS
SpoSPAC3G6.04
GO:0008150 biological_process P
ND
SceS000005119

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_11584

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago458 ABL134C
Candida glabrata (Cgl) cgl3482 CAGL0J11154g
Cryptococcus neoformans (Cne) cne2392 181.m08428
Debaryomyces hansenii (Dha) dha4532 DEHA0F03256g
Gallus gallus (Gga) gga11719 ENSGALP00000002354
Kluyveromyces lactis (Kla) kla2426 KLLA0D08206g
Neurospora crassa (Ncr) ncr4149 NCU04273.2
Saccharomyces cerevisiae (Sce) sce5296 YNL175C
(S000005119)
Schizosaccharomyces pombe (Spo) spo4641 SPAC3G6.04 Q09100
Yarrowia lipolytica (Yli) yli137 YALI0A03773g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC3G6.04
GO:0005730 nucleolus C
IDA
SceS000005119
SpoSPAC3G6.04
ISS
SpoSPAC3G6.04
GO:0030684 preribosome C
IDA
SceS000005119
GO:0003723 RNA binding F
ISS
SceS000005119
SpoSPAC3G6.04
GO:0006364 rRNA processing P
ISS
SpoSPAC3G6.04
GO:0008150 biological_process P
ND
SceS000005119

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC3G6.04
(Q09100)		 YNL175C
(S000005119)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC3G6.04
GO:0005730 nucleolus C
IDA
SceS000005119
SpoSPAC3G6.04
ISS
SpoSPAC3G6.04
GO:0030684 preribosome C
IDA
SceS000005119
GO:0003723 RNA binding F
ISS
SceS000005119
SpoSPAC3G6.04
GO:0006364 rRNA processing P
ISS
SpoSPAC3G6.04
GO:0008150 biological_process P
ND
SceS000005119

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s.khadayate@ucl.ac.uk