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Search term: YNL216W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RAP1
SGD link S000005160
Alternative ID YNL216W
Description DNA-binding protein involved in either activation or repression of transcription, depending on binding site context; also binds telomere sequences and plays a role in telomeric position effect (silencing) and telomere structure
Synonyms YNL216W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
40076

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RAP1
(S000005160)
GI:6324113
Kluyveromyces lactis (Kla) KLLA0D19294g GI:50307849
Eremothecium gossypii (Ego) AGOS_ABL180W GI:45185050


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000781 chromosome, telomeric region C
IDA
SceS000005160
GO:0000783 nuclear telomere cap complex C
IDA
SceS000005160
GO:0005635 nuclear envelope C
IDA
SceS000005160
GO:0003677 DNA binding F
IDA
SceS000005160
GO:0003700 transcription factor activity F
IDA
SceS000005160
GO:0008301 DNA bending activity F
IDA
SceS000005160
GO:0042162 telomeric DNA binding F
IDA
SceS000005160
GO:0043565 sequence-specific DNA binding F
IDA
SceS000005160
GO:0006342 chromatin silencing P
IMP
SceS000005160
GO:0006348 chromatin silencing at telomere P
IMP
SceS000005160
GO:0007004 telomere maintenance via telomerase P
IMP
SceS000005160
GO:0009890 negative regulation of biosynthetic
process
P
RCA
SceS000005160
GO:0016481 negative regulation of transcription P
RCA
SceS000005160
GO:0031848 protection from non-homologous end joining at
telomere
P
IMP
SceS000005160
GO:0045941 positive regulation of transcription P
RCA
SceS000005160

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_24626

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Ashbya gossypii (Ago) ago412 ABL180W
Candida glabrata (Cgl) cgl3735 CAGL0K04917g
Debaryomyces hansenii (Dha) dha2046 DEHA0C13959g
Kluyveromyces lactis (Kla) kla2917 KLLA0D19294g
Saccharomyces cerevisiae (Sce) sce5337 YNL216W
(S000005160)


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000781 chromosome, telomeric region C
IDA
SceS000005160
GO:0000783 nuclear telomere cap complex C
IDA
SceS000005160
GO:0005635 nuclear envelope C
IDA
SceS000005160
GO:0003677 DNA binding F
IDA
SceS000005160
GO:0003700 transcription factor activity F
IDA
SceS000005160
GO:0008301 DNA bending activity F
IDA
SceS000005160
GO:0042162 telomeric DNA binding F
IDA
SceS000005160
GO:0043565 sequence-specific DNA binding F
IDA
SceS000005160
GO:0006342 chromatin silencing P
IMP
SceS000005160
GO:0006348 chromatin silencing at telomere P
IMP
SceS000005160
GO:0007004 telomere maintenance via telomerase P
IMP
SceS000005160
GO:0009890 negative regulation of biosynthetic
process
P
RCA
SceS000005160
GO:0016481 negative regulation of transcription P
RCA
SceS000005160
GO:0031848 protection from non-homologous end joining at
telomere
P
IMP
SceS000005160
GO:0045941 positive regulation of transcription P
RCA
SceS000005160

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC1778.02
(Q96TL7)
YNL216W
(S000005160)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000978
ISS
SpoSPBC1778.02
GO:0000781 chromosome, telomeric region C
IDA
SceS000005160
SpoSPBC1778.02
GO:0000783 nuclear telomere cap complex C
IDA
SceS000005160
GO:0005634 nucleus C
IDA
SpoSPBC1778.02
GO:0005635 nuclear envelope C
IDA
SceS000005160
GO:0005724 nuclear telomeric heterochromatin C
ISS
SpoSPBC1778.02
GO:0070187 telosome C
ISS
SpoSPBC1778.02
GO:0003677 DNA binding F
IDA
SceS000005160
GO:0003700 transcription factor activity F
IDA
SceS000005160
GO:0003704 specific RNA polymerase II transcription factor
activity
F
IC
SpoSPBC1778.02
GO:0005515 protein binding F
IPI
SpoSPBC1778.02
GO:0008301 DNA bending activity F
IDA
SceS000005160
GO:0042162 telomeric DNA binding F
IDA
SceS000005160
GO:0043565 sequence-specific DNA binding F
IDA
SceS000005160
GO:0000723 telomere maintenance P
IGI
SpoSPBC1778.02
GO:0006342 chromatin silencing P
IMP
SceS000005160
GO:0006348 chromatin silencing at telomere P
IMP
SceS000005160
SpoSPBC1778.02
GO:0006366 transcription from RNA polymerase II
promoter
P
ISS
SpoSPBC1778.02
GO:0007004 telomere maintenance via telomerase P
IMP
SceS000005160
GO:0009890 negative regulation of biosynthetic
process
P
RCA
SceS000005160
GO:0016233 telomere capping P
IC
SpoSPBC1778.02
GO:0016481 negative regulation of transcription P
RCA
SceS000005160
GO:0031848 protection from non-homologous end joining at
telomere
P
IGI
SpoSPBC1778.02
IMP
SceS000005160
GO:0031860 telomeric 3' overhang formation P
IGI
SpoSPBC1778.02
GO:0045141 meiotic telomere clustering P
IMP
SpoSPBC1778.02
GO:0045941 positive regulation of transcription P
RCA
SceS000005160

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