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Search term: YNL251C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name NRD1
SGD link S000005195
Alternative ID YNL251C
Description RNA-binding protein that interacts with the C-terminal domain of the RNA polymerase II large subunit (Rpo21p), preferentially at phosphorylated Ser5; required for transcription termination and 3' end maturation of nonpolyadenylated RNAs
Synonyms YNL251C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0132 -CDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSINGINFORMATION STORAGE AND PROCESSING RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains

Species KOG link NCBI link UniProt link
Caenorhabditis elegans (Cel) CE26916
(WBGene00017004)		 GI:17506321 O01864
Drosophila melanogaster (Dme) 7291255 GI:20130205
Homo sapiens (Hsa) Hs22066990 GI:22066990
Homo sapiens (Hsa) Hs7662492 GI:7662492
Saccharomyces cerevisiae (Sce) YNL251c
(S000005195)		 GI:6324078 P53617
Schizosaccharomyces pombe (Spo) SPAC222.09 GI:19114060 Q9UTE3
Caenorhabditis elegans (Cel) CE26916
(WBGene00017004)		 GI:17506321 O01864
Drosophila melanogaster (Dme) 7291255 GI:20130205
Homo sapiens (Hsa) Hs22066990 GI:22066990
Homo sapiens (Hsa) Hs7662492 GI:7662492
Saccharomyces cerevisiae (Sce) YNL251c
(S000005195)		 GI:6324078 P53617
Schizosaccharomyces pombe (Spo) SPAC222.09 GI:19114060 Q9UTE3
Caenorhabditis elegans (Cel) CE26916
(WBGene00017004)		 GI:17506321 O01864
Drosophila melanogaster (Dme) 7291255 GI:20130205
Homo sapiens (Hsa) Hs22066990 GI:22066990
Homo sapiens (Hsa) Hs7662492 GI:7662492
Saccharomyces cerevisiae (Sce) YNL251c
(S000005195)		 GI:6324078 P53617
Schizosaccharomyces pombe (Spo) SPAC222.09 GI:19114060 Q9UTE3


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IPI
SceS000005195
GO:0005634 nucleus C
IDA
SpoSPAC222.09
IPI
SceS000005195
ISS
SpoSPAC222.09
GO:0003723 RNA binding F
IDA
SceS000005195
ISS
SpoSPAC222.09
GO:0003729 mRNA binding F
RCA
SceS000005195
GO:0005515 protein binding F
IPI
SpoSPAC222.09
GO:0006415 translational termination P
RCA
SceS000005195
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00017004
GO:0030847 termination of RNA polymerase II transcription,
poly(A)-independent		 P
IGI
SceS000005195
IMP
SceS000005195
IPI
SceS000005195
ISS
SpoSPAC222.09
GO:0031123 RNA 3'-end processing P
ISS
SpoSPAC222.09

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6748

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) seb1
(SPAC222.09)		 GI:19114060 Q9UTE3
Saccharomyces cerevisiae (Sce) NRD1
(S000005195)		 GI:6324078 P53617
Kluyveromyces lactis (Kla) KLLA0C02893g GI:50304741
Eremothecium gossypii (Ego) AGOS_AFR636C GI:45199154
Magnaporthe grisea (Mgr) MGG_07203 GI:145612549


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IPI
SceS000005195
GO:0005634 nucleus C
IDA
SpoSPAC222.09
IPI
SceS000005195
ISS
SpoSPAC222.09
GO:0003723 RNA binding F
IDA
SceS000005195
ISS
SpoSPAC222.09
GO:0003729 mRNA binding F
RCA
SceS000005195
GO:0005515 protein binding F
IPI
SpoSPAC222.09
GO:0006415 translational termination P
RCA
SceS000005195
GO:0030847 termination of RNA polymerase II transcription,
poly(A)-independent		 P
IGI
SceS000005195
IMP
SceS000005195
IPI
SceS000005195
ISS
SpoSPAC222.09
GO:0031123 RNA 3'-end processing P
ISS
SpoSPAC222.09

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_15176

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago3828 AFR636C
Candida glabrata (Cgl) cgl3332 CAGL0J07810g
Cryptococcus neoformans (Cne) cne532 163.m06485
Debaryomyces hansenii (Dha) dha3787 DEHA0E12364g
Kluyveromyces lactis (Kla) kla1325 KLLA0C02893g
Saccharomyces cerevisiae (Sce) sce5372 YNL251C
(S000005195)
Schizosaccharomyces pombe (Spo) spo2427 SPAC222.09 Q9UTE3
Yarrowia lipolytica (Yli) yli4893 YALI0E24849g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IPI
SceS000005195
GO:0005634 nucleus C
IDA
SpoSPAC222.09
IPI
SceS000005195
ISS
SpoSPAC222.09
GO:0003723 RNA binding F
IDA
SceS000005195
ISS
SpoSPAC222.09
GO:0003729 mRNA binding F
RCA
SceS000005195
GO:0005515 protein binding F
IPI
SpoSPAC222.09
GO:0006415 translational termination P
RCA
SceS000005195
GO:0030847 termination of RNA polymerase II transcription,
poly(A)-independent		 P
IGI
SceS000005195
IMP
SceS000005195
IPI
SceS000005195
ISS
SpoSPAC222.09
GO:0031123 RNA 3'-end processing P
ISS
SpoSPAC222.09

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC222.09
(Q9UTE3)		 YNL251C
(S000005195)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IPI
SceS000005195
GO:0005634 nucleus C
IDA
SpoSPAC222.09
IPI
SceS000005195
ISS
SpoSPAC222.09
GO:0003723 RNA binding F
IDA
SceS000005195
ISS
SpoSPAC222.09
GO:0003729 mRNA binding F
RCA
SceS000005195
GO:0005515 protein binding F
IPI
SpoSPAC222.09
GO:0006415 translational termination P
RCA
SceS000005195
GO:0030847 termination of RNA polymerase II transcription,
poly(A)-independent		 P
IGI
SceS000005195
IMP
SceS000005195
IPI
SceS000005195
ISS
SpoSPAC222.09
GO:0031123 RNA 3'-end processing P
ISS
SpoSPAC222.09

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