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Search term: YNL263C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name YIF1
SGD link S000005207
Alternative ID YNL263C
Description Integral membrane protein required for the fusion of ER-derived COPII transport vesicles with the Golgi; interacts with Yip1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles
Synonyms YNL263C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3094 ACDHYPE

KOGs classification KOGs description
POORLY CHARACTERIZED Predicted membrane protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g30890 GI:15221537
Arabidopsis thaliana (Ath) At3g59500 GI:15231694
Caenorhabditis elegans (Cel) CE05983 GI:17561518
Drosophila melanogaster (Dme) 7301494 GI:7301494 Q9VBC5
Homo sapiens (Hsa) Hs20545322 GI:20545322
Homo sapiens (Hsa) Hs22062544 GI:12654907 O00606
Homo sapiens (Hsa) Hs9994169 GI:9994169
Saccharomyces cerevisiae (Sce) YNL263c
(S000005207)		 GI:6324066 P53845
Schizosaccharomyces pombe (Spo) SPBC25H2.06c GI:19113152 P87148
Encephalitozoon cuniculi (Ecu) ECU09g1590 GI:19173280


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005783 endoplasmic reticulum C
IDA
AthAt3g59500
GO:0005789 endoplasmic reticulum membrane C
IPI
SceS000005207
ISS
SpoSPBC25H2.06c
GO:0016021 integral to membrane C
ISS
AthAt3g59500
At1g30890
GO:0030134 ER to Golgi transport vesicle C
IDA
SceS000005207
ISS
SpoSPBC25H2.06c
GO:0030173 integral to Golgi membrane C
IDA
SceS000005207
ISS
SpoSPBC25H2.06c
GO:0003674 molecular_function F
ND
AthAt1g30890
SceS000005207
SpoSPBC25H2.06c
GO:0006886 intracellular protein transport P
NAS
SpoSPBC25H2.06c
GO:0006888 ER to Golgi vesicle-mediated transport P
IPI
SceS000005207
ISS
SpoSPBC25H2.06c
GO:0008150 biological_process P
ND
AthAt1g30890
GO:0070317 negative regulation of G0 to G1
transition		 P
IMP
SpoSPBC25H2.06c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
56295

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) YIF1A GI:170932464
Pan troglodytes (Ptr) YIF1A GI:114638673
Canis familiaris (Cfa) YIF1A GI:73982992
Mus musculus (Mmu) Yif1a
(MGI:1915340)		 GI:25282409 Q91XB7
Caenorhabditis elegans (Cel) F57A8.2
(CE31547;
WBGene00010178)		 GI:115533208
Schizosaccharomyces pombe (Spo) hfr1 GI:19113152
Saccharomyces cerevisiae (Sce) YIF1
(S000005207)		 GI:6324066 P53845
Kluyveromyces lactis (Kla) KLLA0C02563g GI:50304711
Eremothecium gossypii (Ego) AGOS_AFR658W GI:45199177
Magnaporthe grisea (Mgr) MGG_12628 GI:145610181
Neurospora crassa (Ncr) NCU00624.1 GI:32408647
Oryza sativa (Osa) Os06g0620600 GI:115468982


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1915340
GO:0005737 cytoplasm C
IDA
HsaYIF1A
GO:0005789 endoplasmic reticulum membrane C
IPI
SceS000005207
GO:0005793 ER-Golgi intermediate compartment C
IDA
HsaYIF1A
GO:0005794 Golgi apparatus C
IDA
HsaYIF1A
GO:0030134 ER to Golgi transport vesicle C
IDA
SceS000005207
GO:0030173 integral to Golgi membrane C
IDA
SceS000005207
GO:0003674 molecular_function F
ND
MmuMGI:1915340
SceS000005207
GO:0006888 ER to Golgi vesicle-mediated transport P
IPI
SceS000005207
GO:0008150 biological_process P
ND
MmuMGI:1915340

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1287

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga4305 ENSANGP00000019342
Ashbya gossypii (Ago) ago3851 AFR658W
Arabidopsis thaliana (Ath) ath3232 At1g30890.1
Arabidopsis thaliana (Ath) ath17369 At3g59500.1
Caenorhabditis elegans (Cel) cel10692 F57A8.2
(CE31547;
WBGene00010178)
Candida glabrata (Cgl) cgl3343 CAGL0J08052g
Cryptococcus neoformans (Cne) cne5321 179.m00172
Dictyostelium discoideum (Ddi) ddi5185 DDB0218115
Debaryomyces hansenii (Dha) dha4262 DEHA0E23232g
Drosophila melanogaster (Dme) dme14633 CG5484-PA
(FBgn0039450)
Drosophila melanogaster (Dme) dme14634 CG5484-PB
(FBgn0039450)
Drosophila melanogaster (Dme) dme14635 CG5484-PC
(FBgn0039450)
Danio rerio (Dre) dre5414 ENSDARP00000018303
(zgc:73136)		 Q6PC24
Danio rerio (Dre) dre5415 ENSDARP00000025061
(zgc:73136)
Encephalitozoon cuniculi (Ecu) ecu1431 19173280
Takifugu rubripes (Fru) fru31507 SINFRUP00000134398
Takifugu rubripes (Fru) fru1426 SINFRUP00000156514
Homo sapiens (Hsa) hsa16308 ENSP00000301248
Homo sapiens (Hsa) hsa6015 ENSP00000309372
Homo sapiens (Hsa) hsa16307 ENSP00000329559
(YIF1B)
Homo sapiens (Hsa) hsa16309 ENSP00000337411
(YIF1B)		 Q5BJH7-4
Homo sapiens (Hsa) hsa16306 ENSP00000343435
(YIF1B)		 Q5BJH7-1
Kluyveromyces lactis (Kla) kla1310 KLLA0C02563g
Mus musculus (Mmu) mmu13120 ENSMUSP00000025811
(MGI:1915340)		 Q91XB7
Mus musculus (Mmu) mmu23552 ENSMUSP00000032809
(MGI:1924504)		 Q9CX30-1
Neurospora crassa (Ncr) ncr605 NCU00624.2
Oryza sativa (Osa) osa1068 1917.m00177
Oryza sativa (Osa) osa2028 1937.m00137
Oryza sativa (Osa) osa2074 1937.m00197
Oryza sativa (Osa) osa2075 1937.m00198
Oryza sativa (Osa) osa13877 2956.m00081
Oryza sativa (Osa) osa83956 8304.m00128
Rattus norvegicus (Rno) rno3483 ENSRNOP00000027406
(RGD:628749)		 B0BMV4
Rattus norvegicus (Rno) rno1454 ENSRNOP00000027987
(RGD:735199)		 Q6PEC3-1
Saccharomyces cerevisiae (Sce) sce5384 YNL263C
(S000005207)
Schizosaccharomyces pombe (Spo) spo4360 SPBC25H2.06c P87148
Yarrowia lipolytica (Yli) yli4944 YALI0E26323g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1915340
MGI:1924504
GO:0005783 endoplasmic reticulum C
IDA
AthAt3g59500
GO:0005789 endoplasmic reticulum membrane C
IPI
SceS000005207
ISS
SpoSPBC25H2.06c
GO:0016021 integral to membrane C
ISS
AthAt3g59500
At1g30890
GO:0030134 ER to Golgi transport vesicle C
IDA
SceS000005207
ISS
SpoSPBC25H2.06c
GO:0030173 integral to Golgi membrane C
IDA
SceS000005207
ISS
SpoSPBC25H2.06c
GO:0003674 molecular_function F
ND
AthAt1g30890
MmuMGI:1915340
MGI:1924504
SceS000005207
SpoSPBC25H2.06c
GO:0006886 intracellular protein transport P
NAS
SpoSPBC25H2.06c
GO:0006888 ER to Golgi vesicle-mediated transport P
IPI
SceS000005207
ISS
SpoSPBC25H2.06c
GO:0008150 biological_process P
ND
AthAt1g30890
MmuMGI:1915340
MGI:1924504
GO:0070317 negative regulation of G0 to G1
transition		 P
IMP
SpoSPBC25H2.06c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC25H2.06c
(P87148)		 YNL263C
(S000005207)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005789 endoplasmic reticulum membrane C
IPI
SceS000005207
ISS
SpoSPBC25H2.06c
GO:0030134 ER to Golgi transport vesicle C
IDA
SceS000005207
ISS
SpoSPBC25H2.06c
GO:0030173 integral to Golgi membrane C
IDA
SceS000005207
ISS
SpoSPBC25H2.06c
GO:0003674 molecular_function F
ND
SceS000005207
SpoSPBC25H2.06c
GO:0006886 intracellular protein transport P
NAS
SpoSPBC25H2.06c
GO:0006888 ER to Golgi vesicle-mediated transport P
IPI
SceS000005207
ISS
SpoSPBC25H2.06c
GO:0070317 negative regulation of G0 to G1
transition		 P
IMP
SpoSPBC25H2.06c

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GO info in one table:

s.khadayate@ucl.ac.uk