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Search term: YNL288W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CAF40
SGD link S000005232
Alternative ID YNL288W
Description Evolutionarily conserved subunit of the CCR4-NOT complex involved in controlling mRNA initiation, elongation and degradation; binds Cdc39p
Synonyms YNL288W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3036 ACDHYPE

KOGs classification KOGs description
POORLY CHARACTERIZED Protein involved in cell differentiation/sexual development

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g32550 GI:15225705
Arabidopsis thaliana (Ath) At3g20800 GI:15232369
Arabidopsis thaliana (Ath) At5g12980 GI:15239962
Caenorhabditis elegans (Cel) CE01161 GI:17552302
Drosophila melanogaster (Dme) 7293619
(FBgn0031047)		 GI:20129055
Drosophila melanogaster (Dme) 7297484 GI:19920984
Drosophila melanogaster (Dme) 7302111 GI:7302111
Homo sapiens (Hsa) Hs4885579
(RQCD1)		 GI:4885579 Q92600
Saccharomyces cerevisiae (Sce) YNL288w
(S000005232)		 GI:6324041 P53829
Schizosaccharomyces pombe (Spo) SPAC29B12.06c GI:19115896 Q92368
Encephalitozoon cuniculi (Ecu) ECU01g0380 GI:19075047


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g20800
At2g32550
GO:0005634 nucleus C
IDA
SpoSPAC29B12.06c
GO:0005737 cytoplasm C
IDA
SpoSPAC29B12.06c
GO:0030014 CCR4-NOT complex C
ISS
SpoSPAC29B12.06c
GO:0030015 CCR4-NOT core complex C
IPI
SceS000005232
GO:0003674 molecular_function F
ND
AthAt5g12980
At3g20800
SceS000005232
GO:0003723 RNA binding F
TAS
SpoSPAC29B12.06c
GO:0005515 protein binding F
IPI
HsaRQCD1
GO:0000122 negative regulation of transcription from RNA
polymerase II promoter		 P
IMP
SpoSPAC29B12.06c
GO:0006354 RNA elongation P
IC
SpoSPAC29B12.06c
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IPI
SceS000005232
GO:0006402 mRNA catabolic process P
IC
SpoSPAC29B12.06c
GO:0007275 multicellular organismal development P
ISS
AthAt5g12980
At2g32550
At3g20800
GO:0007548 sex differentiation P
TAS
HsaRQCD1
GO:0010515 negative regulation of induction of conjugation
with cellular fusion		 P
IMP
SpoSPAC29B12.06c
GO:0031138 negative regulation of conjugation with cellular
fusion		 P
IGI
SpoSPAC29B12.06c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
3973

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RQCD1 GI:4885579 Q92600
Pan troglodytes (Ptr) RQCD1 GI:114583332
Canis familiaris (Cfa) RQCD1 GI:74005731
Mus musculus (Mmu) Rqcd1
(MGI:1928902)		 GI:10946722 Q9JKY0
Rattus norvegicus (Rno) Rqcd1
(RGD:1311495)		 GI:57164127
Gallus gallus (Gga) RQCD1 GI:57529747
Drosophila melanogaster (Dme) CG14213
(FBgn0031047)		 GI:20129055
Anopheles gambiae (Aga) AgaP_AGAP012050 GI:158300598
Caenorhabditis elegans (Cel) C26E6.3
(CE32144;
WBGene00016139)		 GI:32565508
Schizosaccharomyces pombe (Spo) rcd1
(SPAC29B12.06c)		 GI:19115896 Q92368
Saccharomyces cerevisiae (Sce) CAF40
(S000005232)		 GI:6324041 P53829
Kluyveromyces lactis (Kla) KLLA0E13277g GI:50309083
Eremothecium gossypii (Ego) AGOS_AEL194W GI:45190413
Magnaporthe grisea (Mgr) MGG_00632 GI:145611130
Neurospora crassa (Ncr) NCU07071.1 GI:32413755
Arabidopsis thaliana (Ath) AT3G20800 GI:15232369
Arabidopsis thaliana (Ath) AT5G12980 GI:15239962
Oryza sativa (Osa) Os03g0784800 GI:115455753
Oryza sativa (Osa) Os04g0613400 GI:115460508
Plasmodium falciparum (Pfa) PFE0375w GI:124506073


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g20800
MmuMGI:1928902
GO:0005634 nucleus C
IDA
SpoSPAC29B12.06c
GO:0005737 cytoplasm C
IDA
SpoSPAC29B12.06c
GO:0030014 CCR4-NOT complex C
ISS
SpoSPAC29B12.06c
GO:0030015 CCR4-NOT core complex C
IPI
SceS000005232
GO:0003674 molecular_function F
ND
AthAt5g12980
At3g20800
SceS000005232
GO:0003723 RNA binding F
TAS
SpoSPAC29B12.06c
GO:0005515 protein binding F
IPI
HsaRQCD1
MmuMGI:1928902
GO:0000122 negative regulation of transcription from RNA
polymerase II promoter		 P
IMP
SpoSPAC29B12.06c
GO:0006354 RNA elongation P
IC
SpoSPAC29B12.06c
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IPI
SceS000005232
GO:0006402 mRNA catabolic process P
IC
SpoSPAC29B12.06c
GO:0007275 multicellular organismal development P
ISS
AthAt5g12980
At3g20800
GO:0007548 sex differentiation P
TAS
HsaRQCD1
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00016139
GO:0010515 negative regulation of induction of conjugation
with cellular fusion		 P
IMP
SpoSPAC29B12.06c
GO:0019221 cytokine-mediated signaling pathway P
IDA
MmuMGI:1928902
GO:0030154 cell differentiation P
ISS
PfaPFE0375w
GO:0031138 negative regulation of conjugation with cellular
fusion		 P
IGI
SpoSPAC29B12.06c
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00016139

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1503

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga9232 ENSANGP00000015668
Anopheles gambiae (Aga) aga9231 ENSANGP00000028470
Ashbya gossypii (Ago) ago2312 AEL194W
Arabidopsis thaliana (Ath) ath14377 At3g20800.1
Arabidopsis thaliana (Ath) ath23486 At5g12980.1
Caenorhabditis elegans (Cel) cel2772 C26E6.3
(CE32144;
WBGene00016139)
Candida glabrata (Cgl) cgl4810 CAGL0M03553g
Cryptococcus neoformans (Cne) cne5355 179.m00207
Dictyostelium discoideum (Ddi) ddi11560 DDB0216421
Debaryomyces hansenii (Dha) dha205 DEHA0A04620g
Drosophila melanogaster (Dme) dme18673 CG14213-PA
(FBgn0031047)
Drosophila melanogaster (Dme) dme18672 CG14213-PB
(FBgn0031047)
Danio rerio (Dre) dre25140 ENSDARP00000021591
Danio rerio (Dre) dre14244 ENSDARP00000047463
(rqcd1)		 Q6NWL4
Encephalitozoon cuniculi (Ecu) ecu1684 19075047
Takifugu rubripes (Fru) fru23621 SINFRUP00000166275
Gallus gallus (Gga) gga21756 ENSGALP00000018575
(RQCD1)		 Q5ZK60
Gallus gallus (Gga) gga21757 ENSGALP00000018576
(RQCD1)
Homo sapiens (Hsa) hsa19282 ENSP00000273064
(RQCD1)		 Q92600
Kluyveromyces lactis (Kla) kla3546 KLLA0E13277g
Mus musculus (Mmu) mmu551 ENSMUSP00000027363
Neurospora crassa (Ncr) ncr6881 NCU07071.2
Oryza sativa (Osa) osa1471 1519.m00099
Oryza sativa (Osa) osa44346 5329.m00153
Oryza sativa (Osa) osa65345 6756.m00117
Oryza sativa (Osa) osa68065 6900.m00125
Oryza sativa (Osa) osa80804 8113.m00057
Plasmodium falciparum (Pfa) pfa3526 PFE0375w
Rattus norvegicus (Rno) rno30242 ENSRNOP00000021548
(RGD:1311495)		 Q5PQL2
Saccharomyces cerevisiae (Sce) sce5412 YNL288W
(S000005232)
Schizosaccharomyces pombe (Spo) spo2093 SPAC29B12.06c Q92368
Yarrowia lipolytica (Yli) yli5479 YALI0F03344g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g20800
GO:0005634 nucleus C
IDA
SpoSPAC29B12.06c
GO:0005737 cytoplasm C
IDA
SpoSPAC29B12.06c
GO:0030014 CCR4-NOT complex C
ISS
SpoSPAC29B12.06c
GO:0030015 CCR4-NOT core complex C
IPI
SceS000005232
GO:0003674 molecular_function F
ND
AthAt5g12980
At3g20800
SceS000005232
GO:0003723 RNA binding F
TAS
SpoSPAC29B12.06c
GO:0000122 negative regulation of transcription from RNA
polymerase II promoter		 P
IMP
SpoSPAC29B12.06c
GO:0006354 RNA elongation P
IC
SpoSPAC29B12.06c
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IPI
SceS000005232
GO:0006402 mRNA catabolic process P
IC
SpoSPAC29B12.06c
GO:0007275 multicellular organismal development P
ISS
AthAt5g12980
At3g20800
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00016139
GO:0010515 negative regulation of induction of conjugation
with cellular fusion		 P
IMP
SpoSPAC29B12.06c
GO:0030154 cell differentiation P
ISS
PfaPFE0375w
GO:0031138 negative regulation of conjugation with cellular
fusion		 P
IGI
SpoSPAC29B12.06c
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00016139

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC29B12.06c
(Q92368)		 YNL288W
(S000005232)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC29B12.06c
GO:0005737 cytoplasm C
IDA
SpoSPAC29B12.06c
GO:0030014 CCR4-NOT complex C
ISS
SpoSPAC29B12.06c
GO:0030015 CCR4-NOT core complex C
IPI
SceS000005232
GO:0003674 molecular_function F
ND
SceS000005232
GO:0003723 RNA binding F
TAS
SpoSPAC29B12.06c
GO:0000122 negative regulation of transcription from RNA
polymerase II promoter		 P
IMP
SpoSPAC29B12.06c
GO:0006354 RNA elongation P
IC
SpoSPAC29B12.06c
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IPI
SceS000005232
GO:0006402 mRNA catabolic process P
IC
SpoSPAC29B12.06c
GO:0010515 negative regulation of induction of conjugation
with cellular fusion		 P
IMP
SpoSPAC29B12.06c
GO:0031138 negative regulation of conjugation with cellular
fusion		 P
IGI
SpoSPAC29B12.06c

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Query species:

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Search for GO info:  

GO info in one table:

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