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Search term: YNL290W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RFC3
SGD link S000005234
Alternative ID YNL290W
Description Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon
Synonyms YNL290W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0990 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Replication factor C, subunit RFC5

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g77470 GI:15223967
Caenorhabditis elegans (Cel) CE29043
(WBGene00004125)
GI:17553434 P34428
Caenorhabditis elegans (Cel) CE29044 GI:17553436
Drosophila melanogaster (Dme) 7297692 GI:7297692
Homo sapiens (Hsa) Hs22058826 GI:22058826
Homo sapiens (Hsa) Hs6677723
(RFC5)
GI:6677723 P40937
Saccharomyces cerevisiae (Sce) YNL290w
(S000005234)
GI:6324039 P38629
Schizosaccharomyces pombe (Spo) SPAC27E2.10c GI:19115323 O14003
Schizosaccharomyces pombe (Spo) SPAPJ698.01c GI:19115324
Encephalitozoon cuniculi (Ecu) ECU02g0290 GI:19073950 Q8SSI2
Arabidopsis thaliana (Ath) At1g77470 GI:15223967
Caenorhabditis elegans (Cel) CE29043
(WBGene00004125)
GI:17553434 P34428
Caenorhabditis elegans (Cel) CE29044 GI:17553436
Drosophila melanogaster (Dme) 7297692 GI:7297692
Homo sapiens (Hsa) Hs22058826 GI:22058826
Homo sapiens (Hsa) Hs6677723
(RFC5)
GI:6677723 P40937
Saccharomyces cerevisiae (Sce) YNL290w
(S000005234)
GI:6324039 P38629
Schizosaccharomyces pombe (Spo) SPAC27E2.10c GI:19115323 O14003
Schizosaccharomyces pombe (Spo) SPAPJ698.01c GI:19115324
Encephalitozoon cuniculi (Ecu) ECU02g0290 GI:19073950 Q8SSI2


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPAC27E2.10c
GO:0005634 nucleus C
IC
SpoSPAC27E2.10c
IDA
SceS000005234
SpoSPAC27E2.10c
GO:0005654 nucleoplasm C
EXP
HsaRFC5
GO:0005663 DNA replication factor C complex C
IDA
HsaRFC5
SceS000005234
ISS
AthAt1g77470
TAS
SpoSPAC27E2.10c
GO:0005829 cytosol C
IDA
SpoSPAC27E2.10c
GO:0031389 Rad17 RFC-like complex C
IDA
SceS000005234
TAS
SpoSPAC27E2.10c
GO:0031390 Ctf18 RFC-like complex C
IPI
SceS000005234
TAS
SpoSPAC27E2.10c
GO:0031391 Elg1 RFC-like complex C
IDA
SpoSPAC27E2.10c
IPI
SceS000005234
GO:0043596 nuclear replication fork C
IC
SpoSPAC27E2.10c
GO:0000166 nucleotide binding F
RCA
SceS000005234
GO:0003689 DNA clamp loader activity F
IDA
SceS000005234
TAS
SpoSPAC27E2.10c
GO:0005515 protein binding F
IPI
HsaRFC5
GO:0005524 ATP binding F
ISS
SpoSPAC27E2.10c
GO:0016887 ATPase activity F
IDA
SceS000005234
ISS
AthAt1g77470
GO:0017076 purine nucleotide binding F
RCA
SceS000005234
GO:0019899 enzyme binding F
NAS
HsaRFC5
GO:0000077 DNA damage checkpoint P
IMP
SpoSPAC27E2.10c
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00004125
GO:0006260 DNA replication P
EXP
HsaRFC5
NAS
HsaRFC5
GO:0006261 DNA-dependent DNA replication P
IC
SpoSPAC27E2.10c
GO:0006272 leading strand elongation P
IDA
SceS000005234
GO:0006281 DNA repair P
NAS
HsaRFC5
GO:0006297 nucleotide-excision repair, DNA gap
filling
P
EXP
HsaRFC5
GO:0006298 mismatch repair P
TAS
SceS000005234
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00004125
GO:0007062 sister chromatid cohesion P
IPI
SceS000005234
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004125
GO:0010171 body morphogenesis P
IMP
CelWBGene00004125
GO:0031348 negative regulation of defense
response
P
IMP
AthAt1g77470
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004125
GO:0040011 locomotion P
IMP
CelWBGene00004125

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6730

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RFC5 GI:6677723 P40937
Pan troglodytes (Ptr) RFC5 GI:114647197
Canis familiaris (Cfa) RFC5 GI:73995285
Mus musculus (Mmu) Rfc5
(MGI:1919401)
GI:110625924 Q3UDK3
Rattus norvegicus (Rno) Rfc5 GI:109496047
Drosophila melanogaster (Dme) RfC3
(FBgn0032244)
GI:19921076
Anopheles gambiae (Aga) AgaP_AGAP005144 GI:158292645
Caenorhabditis elegans (Cel) ARPA GI:71986063
Schizosaccharomyces pombe (Spo) SPAPJ698.01c GI:63054626
Saccharomyces cerevisiae (Sce) RFC3
(S000005234)
GI:6324039 P38629
Kluyveromyces lactis (Kla) KLLA0E13233g GI:50309079
Eremothecium gossypii (Ego) AGOS_AEL196W GI:45190411
Magnaporthe grisea (Mgr) MGG_13023 GI:145615073
Neurospora crassa (Ncr) NCU08427.1 GI:32417990
Arabidopsis thaliana (Ath) AT1G77470 GI:15223967
Oryza sativa (Osa) Os02g0775200 GI:115449001
Plasmodium falciparum (Pfa) PF14_0601 GI:124810138


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000005234
GO:0005654 nucleoplasm C
EXP
HsaRFC5
GO:0005663 DNA replication factor C complex C
IDA
HsaRFC5
SceS000005234
ISS
AthAt1g77470
DmeFBgn0032244
PfaPF14_0601
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0032244
GO:0031389 Rad17 RFC-like complex C
IDA
SceS000005234
GO:0031390 Ctf18 RFC-like complex C
IPI
SceS000005234
GO:0031391 Elg1 RFC-like complex C
IPI
SceS000005234
GO:0043626 PCNA complex C
ISS
PfaPF14_0601
GO:0000166 nucleotide binding F
RCA
SceS000005234
GO:0003677 DNA binding F
ISS
DmeFBgn0032244
GO:0003689 DNA clamp loader activity F
IDA
SceS000005234
GO:0005515 protein binding F
IPI
HsaRFC5
GO:0016887 ATPase activity F
IDA
SceS000005234
ISS
AthAt1g77470
GO:0017076 purine nucleotide binding F
RCA
SceS000005234
GO:0019899 enzyme binding F
NAS
HsaRFC5
GO:0006260 DNA replication P
EXP
HsaRFC5
ISS
DmeFBgn0032244
NAS
HsaRFC5
GO:0006271 DNA strand elongation involved in DNA
replication
P
ISS
PfaPF14_0601
GO:0006272 leading strand elongation P
IDA
SceS000005234
GO:0006281 DNA repair P
NAS
HsaRFC5
GO:0006297 nucleotide-excision repair, DNA gap
filling
P
EXP
HsaRFC5
GO:0006298 mismatch repair P
TAS
SceS000005234
GO:0007062 sister chromatid cohesion P
IPI
SceS000005234
GO:0031348 negative regulation of defense
response
P
IMP
AthAt1g77470

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_622

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga525 ENSANGP00000009970
Ashbya gossypii (Ago) ago2310 AEL196W
Arabidopsis thaliana (Ath) ath1528 At1g14460.1
Arabidopsis thaliana (Ath) ath7085 At1g77470.1
Arabidopsis thaliana (Ath) ath7650 At2g02480.1
Arabidopsis thaliana (Ath) ath20450 At4g24790.1
Caenorhabditis elegans (Cel) cel9079 F44B9.8
(CE37518;
WBGene00018409)
Candida glabrata (Cgl) cgl4811 CAGL0M03575g
Cryptococcus neoformans (Cne) cne2704 183.m01850
Cryptococcus neoformans (Cne) cne2705 183.m01858
Dictyostelium discoideum (Ddi) ddi6727 DDB0205283
Debaryomyces hansenii (Dha) dha4280 DEHA0E23595g
Drosophila melanogaster (Dme) dme1828 CG5313-PA
(FBgn0032244)
Escherichia coli (Eco) eco459 16128454
Encephalitozoon cuniculi (Ecu) ecu29 19073950
Takifugu rubripes (Fru) fru4676 SINFRUP00000164364
Homo sapiens (Hsa) hsa8268 ENSP00000229043
(RFC5)
Kluyveromyces lactis (Kla) kla3544 KLLA0E13233g
Mus musculus (Mmu) mmu20792 ENSMUSP00000031308
(MGI:3642170)
Q3UWJ4
Neurospora crassa (Ncr) ncr8212 NCU08427.2
Oryza sativa (Osa) osa28776 4256.m00167
Oryza sativa (Osa) osa46015 5513.m00174
Oryza sativa (Osa) osa54956 6321.m00109
Oryza sativa (Osa) osa59491 6351.m00044
Oryza sativa (Osa) osa76526 7406.m00125
Plasmodium falciparum (Pfa) pfa1356 PF14_0601
Rattus norvegicus (Rno) rno8693 ENSRNOP00000001498
(RGD:1309280)
B5DF29
Saccharomyces cerevisiae (Sce) sce5414 YNL290W
(S000005234)
Schizosaccharomyces pombe (Spo) spo73 SPAC27E2.10c O14003
Yarrowia lipolytica (Yli) yli75 YALI0A02068g