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Search term: YNL299W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TRF5
SGD link S000005243
Alternative ID YNL299W
Description Non-canonical poly(A) polymerase, involved in nuclear RNA degradation as a component of the TRAMP complex; catalyzes polyadenylation of hypomodified tRNAs, and snoRNA and rRNA precursors; overlapping but non-redundant functions with Pap2p
Synonyms YNL299W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1906 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING DNA polymerase sigma

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g40520 GI:15226708
Arabidopsis thaliana (Ath) At3g51620 GI:15230537
Arabidopsis thaliana (Ath) At3g56320 GI:15228893
Arabidopsis thaliana (Ath) At3g61690 GI:15233183
Arabidopsis thaliana (Ath) At4g00060 GI:15236698
Arabidopsis thaliana (Ath) At5g53770 GI:9759071
Caenorhabditis elegans (Cel) CE15421 GI:17511111
Drosophila melanogaster (Dme) 7290950 GI:7290950
Drosophila melanogaster (Dme) 7301238 GI:7301238
Homo sapiens (Hsa) Hs13937361 GI:13937361
Homo sapiens (Hsa) Hs5902142
(POLS)
GI:5902142 Q5XG87
Saccharomyces cerevisiae (Sce) YNL299w
(S000005243)
GI:6324030
Saccharomyces cerevisiae (Sce) YOL115w
(S000005475)
GI:6324457 P53632
Schizosaccharomyces pombe (Spo) SPAC12G12.13c_2 GI:19113797 Q9UTN3
Schizosaccharomyces pombe (Spo) SPCC663.12 GI:19075773 O74518
Encephalitozoon cuniculi (Ecu) ECU06g1520 GI:19074403 Q8SRM8


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g53770
At3g51620
At2g40520
GO:0005634 nucleus C
IDA
SceS000005475
SpoSPCC663.12
SPAC12G12.13c
GO:0005681 spliceosomal complex C
IDA
SpoSPCC663.12
GO:0005730 nucleolus C
IDA
SceS000005243
S000005475
SpoSPAC12G12.13c
GO:0005829 cytosol C
IDA
SpoSPCC663.12
GO:0031379 RNA-directed RNA polymerase complex C
IDA
SpoSPCC663.12
GO:0031380 nuclear RNA-directed RNA polymerase
complex
C
IDA
SpoSPCC663.12
GO:0031499 TRAMP complex C
IDA
SceS000005475
S000005243
SpoSPAC12G12.13c
GO:0043234 protein complex C
IDA
SpoSPAC12G12.13c
GO:0003674 molecular_function F
ND
AthAt3g51620
GO:0003676 nucleic acid binding F
ISS
AthAt5g53770
GO:0004652 polynucleotide adenylyltransferase
activity
F
IDA
SceS000005475
S000005243
IGI
SceS000005475
S000005243
IMP
SceS000005475
S000005243
SpoSPAC12G12.13c
ISS
SceS000005475
S000005243
SpoSPCC663.12
GO:0016779 nucleotidyltransferase activity F
ISS
AthAt3g56320
At4g00060
At2g40520
GO:0051575 5'-deoxyribose-5-phosphate lyase
activity
F
IDA
SceS000005475
IMP
SceS000005475
GO:0000077 DNA damage checkpoint P
IGI
SpoSPCC663.12
GO:0006284 base-excision repair P
IGI
SceS000005475
IMP
SceS000005475
GO:0006364 rRNA processing P
RCA
SceS000005243
GO:0007000 nucleolus organization P
IMP
SpoSPAC12G12.13c
GO:0007059 chromosome segregation P
IMP
SpoSPCC663.12
SPAC12G12.13c
GO:0007094 mitotic cell cycle spindle assembly
checkpoint
P
IGI
SpoSPCC663.12
SPAC12G12.13c
GO:0008150 biological_process P
ND
AthAt5g53770
At2g40520
At3g56320
At3g51620
GO:0009793 embryo development ending in seed
dormancy
P
IMP
AthAt4g00060
GO:0016073 snRNA metabolic process P
RCA
SceS000005475
GO:0016075 rRNA catabolic process P
IGI
SpoSPAC12G12.13c
GO:0016077 snoRNA catabolic process P
ISS
SpoSPAC12G12.13c
GO:0016078 tRNA catabolic process P
ISS
SpoSPAC12G12.13c
GO:0030702 chromatin silencing at centromere P
IMP
SpoSPCC663.12
GO:0031048 chromatin silencing by small RNA P
IGI
SpoSPCC663.12
IMP
SpoSPCC663.12
GO:0031125 rRNA 3'-end processing P
IGI
SpoSPAC12G12.13c
GO:0031134 sister chromatid biorientation P
IMP
SpoSPCC663.12
GO:0034475 U4 snRNA 3'-end processing P
IGI
SceS000005475
S000005243
IMP
SceS000005243
S000005475
GO:0040020 regulation of meiosis P
IGI
SpoSPAC12G12.13c
GO:0043629 ncRNA polyadenylation P
IDA
SceS000005475
IGI
SceS000005475
S000005243
IMP
SceS000005475
GO:0043630 ncRNA polyadenylation involved in
polyadenylation-dependent ncRNA catabolic
process
P
ISS
SpoSPAC12G12.13c
GO:0043631 RNA polyadenylation P
ISS
SpoSPCC663.12
TAS
SpoSPAC12G12.13c
GO:0045144 meiotic sister chromatid segregation P
IMP
SpoSPAC12G12.13c
GO:0051315 attachment of spindle microtubules to kinetochore
involved in mitotic sister chromatid
segregation
P
IMP
SpoSPCC663.12
GO:0071031 nuclear mRNA surveillance of mRNA 3'-end
processing
P
IGI
SceS000005475
GO:0071035 nuclear polyadenylation-dependent rRNA catabolic
process
P
IGI
SceS000005243
S000005475
IMP
SceS000005243
S000005475
GO:0071036 nuclear polyadenylation-dependent snoRNA catabolic
process
P
IGI
SceS000005243
S000005475
IMP
SceS000005475
GO:0071037 nuclear polyadenylation-dependent snRNA catabolic
process
P
IGI
SceS000005243
IMP
SceS000005475
GO:0071038 nuclear polyadenylation-dependent tRNA catabolic
process
P
IDA
SceS000005475
IGI
SceS000005243
S000005475
IMP
SceS000005475
GO:0071039 nuclear polyadenylation-dependent CUT catabolic
process
P
IGI
SceS000005243
S000005475
IMP
SceS000005475
GO:0071040 nuclear polyadenylation-dependent antisense
transcript catabolic process
P
IMP
SceS000005475
GO:0071042 nuclear polyadenylation-dependent mRNA catabolic
process
P
IGI
SceS000005243
S000005475
GO:0071044 histone mRNA catabolic process P
IGI
SceS000005243
S000005475
GO:0071047 polyadenylation-dependent mRNA catabolic
process
P
IMP
SceS000005475
GO:0071050 snoRNA polyadenylation P
IGI
SceS000005243
S000005475
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing
P
IGI
SceS000005243
S000005475

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
31857

Species Gene ID NCBI link UniProt link
Gallus gallus (Gga) POLS GI:61098442
Schizosaccharomyces pombe (Spo) cid14
(SPAC12G12.13c)
GI:67989518 Q9UTN3
Saccharomyces cerevisiae (Sce) TRF5
(S000005243)
GI:81360384
Kluyveromyces lactis (Kla) KLLA0A07359g GI:50302781
Eremothecium gossypii (Ego) AGOS_AEL207W GI:45190400


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC12G12.13c
GO:0005730 nucleolus C
IDA
SceS000005243
SpoSPAC12G12.13c
GO:0031499 TRAMP complex C
IDA
SceS000005243
SpoSPAC12G12.13c
GO:0043234 protein complex C
IDA
SpoSPAC12G12.13c
GO:0004652 polynucleotide adenylyltransferase
activity
F
IDA
SceS000005243
IGI
SceS000005243
IMP
SceS000005243
SpoSPAC12G12.13c
ISS
SceS000005243
GO:0006364 rRNA processing P
RCA
SceS000005243
GO:0007000 nucleolus organization P
IMP
SpoSPAC12G12.13c
GO:0007059 chromosome segregation P
IMP
SpoSPAC12G12.13c
GO:0007094 mitotic cell cycle spindle assembly
checkpoint
P
IGI
SpoSPAC12G12.13c
GO:0016075 rRNA catabolic process P
IGI
SpoSPAC12G12.13c
GO:0016077 snoRNA catabolic process P
ISS
SpoSPAC12G12.13c
GO:0016078 tRNA catabolic process P
ISS
SpoSPAC12G12.13c
GO:0031125 rRNA 3'-end processing P
IGI
SpoSPAC12G12.13c
GO:0034475 U4 snRNA 3'-end processing P
IGI
SceS000005243
IMP
SceS000005243
GO:0040020 regulation of meiosis P
IGI
SpoSPAC12G12.13c
GO:0043629 ncRNA polyadenylation P
IGI
SceS000005243
GO:0043630 ncRNA polyadenylation involved in
polyadenylation-dependent ncRNA catabolic
process
P
ISS
SpoSPAC12G12.13c
GO:0043631 RNA polyadenylation P
TAS
SpoSPAC12G12.13c
GO:0045144 meiotic sister chromatid segregation P
IMP
SpoSPAC12G12.13c
GO:0071035 nuclear polyadenylation-dependent rRNA catabolic
process
P
IGI
SceS000005243
IMP
SceS000005243
GO:0071036 nuclear polyadenylation-dependent snoRNA catabolic
process
P
IGI
SceS000005243
GO:0071037 nuclear polyadenylation-dependent snRNA catabolic
process
P
IGI
SceS000005243
GO:0071038 nuclear polyadenylation-dependent tRNA catabolic
process
P
IGI
SceS000005243
GO:0071039 nuclear polyadenylation-dependent CUT catabolic
process
P
IGI
SceS000005243
GO:0071042 nuclear polyadenylation-dependent mRNA catabolic
process
P
IGI
SceS000005243
GO:0071044 histone mRNA catabolic process P
IGI
SceS000005243
GO:0071050 snoRNA polyadenylation P
IGI
SceS000005243
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing
P
IGI
SceS000005243

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1104

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga3671 ENSANGP00000017407
Ashbya gossypii (Ago) ago2299 AEL207W
Arabidopsis thaliana (Ath) ath27345 At5g53770.1
Caenorhabditis elegans (Cel) cel22293 ZK858.1
(CE34234;
WBGene00014115)
Candida glabrata (Cgl) cgl1034 CAGL0E02101g
Candida glabrata (Cgl) cgl4819 CAGL0M03751g
Cryptococcus neoformans (Cne) cne3627 176.m02361
Dictyostelium discoideum (Ddi) ddi7483 DDB0219496
Debaryomyces hansenii (Dha) dha115 DEHA0A02607g
Drosophila melanogaster (Dme) dme17016 CG11265-PA
(FBgn0030049)
Drosophila melanogaster (Dme) dme17018 CG11265-PB
(FBgn0030049)
Drosophila melanogaster (Dme) dme17019 CG11265-PC
(FBgn0030049)
Drosophila melanogaster (Dme) dme17017 CG11265-PE
(FBgn0030049)
Danio rerio (Dre) dre21707 ENSDARP00000003771
Danio rerio (Dre) dre10091 ENSDARP00000014008
Danio rerio (Dre) dre10090 ENSDARP00000027801
Encephalitozoon cuniculi (Ecu) ecu1630 19074403
Takifugu rubripes (Fru) fru40 SINFRUP00000149658
Gallus gallus (Gga) gga4590 ENSGALP00000006115
(PAPD5)
Gallus gallus (Gga) gga10666 ENSGALP00000021290
(RCJMB04_10o8)
Q5ZKG9
Gallus gallus (Gga) gga10667 ENSGALP00000021291
(RCJMB04_10o8)
Homo sapiens (Hsa) hsa25021 ENSP00000230859
(PAPD7)
Q5XG87
Homo sapiens (Hsa) hsa12166 ENSP00000240560
(EDEM3)
Q9H941
Kluyveromyces lactis (Kla) kla324 KLLA0A07359g
Mus musculus (Mmu) mmu7217 ENSMUSP00000040757
(MGI:2682295)
Neurospora crassa (Ncr) ncr5429 NCU05588.2
Oryza sativa (Osa) osa12926 2905.m00127
Oryza sativa (Osa) osa42354 5150.m00137
Plasmodium falciparum (Pfa) pfa3913 MAL13P1.170
Rattus norvegicus (Rno) rno12835 ENSRNOP00000023712
(RGD:1307356)
Rattus norvegicus (Rno) rno14657 ENSRNOP00000032034
(RGD:1309587)
Saccharomyces cerevisiae (Sce) sce5423 YNL299W
(S000005243)
Saccharomyces cerevisiae (Sce) sce5673 YOL115W
(S000005475)
Schizosaccharomyces pombe (Spo) spo994 SPAC12G12.13c Q9UTN3
Yarrowia lipolytica (Yli) yli6596 YALI0F30525g