Bahler Lab

Search term: YNL304W

Gene summary:

Species Saccharomyces cerevisiae (Sce)

Primary name YPT11

SGD link S000005248

Alternative ID YNL304W

Description Rab-type small GTPase that interacts with the C-terminal tail domain of Myo2p; mediates distribution of mitochondria and endoplasmic reticuli to daughter cells

Synonyms YNL304W

Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards: Yes No

Search for GO info: Yes No

GO info in one table: Yes No

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)

KOG0087 ACDHYPE

KOGs classification KOGs description

CELLULAR PROCESSES AND SIGNALING GTPase Rab11/YPT3, small G protein superfamily

GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations

GO:0000131 incipient cellular bud site C
IDA
Sce S000005248

GO:0005575 cellular_component C
ND
Ath At4g08190

GO:0005634 nucleus C
IDA
Ath At1g01200
At5g45750
Spo SPAC18G6.03

GO:0005635 nuclear envelope C
IDA
Dme FBgn0015790

GO:0005737 cytoplasm C
IDA
Dme FBgn0015790
Spo SPAC18G6.03

GO:0005741 mitochondrial outer membrane C
IDA
Sce S000000833
S000003178

GO:0005768 endosome C
IDA
Ath At1g07410
At3g46830
At1g01200
At1g09630
At5g59150
Dme FBgn0015790
Sce S000000833
S000003178

GO:0005773 vacuole C
IDA
Ath At1g16920
At5g45750

GO:0005783 endoplasmic reticulum C
IDA
Sce S000005248

GO:0005794 Golgi apparatus C
IDA
Dme FBgn0015790
Sce S000000833
S000003178
TAS
Sce S000003178
S000000833

GO:0005795 Golgi stack C
IDA
Ath At2g43130

GO:0005798 Golgi-associated vesicle C
IDA
Ath At2g43130

GO:0005802 trans-Golgi network C
IDA
Ath At2g43130
Hsa RAB11A
NAS
Ath At1g16920

GO:0005811 lipid particle C
IDA
Dme FBgn0015790

GO:0005813 centrosome C
IDA
Dme FBgn0015790

GO:0005829 cytosol C
IDA
Spo SPAC18G6.03

GO:0005886 plasma membrane C
IDA
Ath At1g06400
At1g28550
At1g07410
At1g09630
At1g16920
At2g43130
At3g07410
At1g73640
At3g46830
At5g45750
At5g59150
At4g18430
At4g18800
At4g39990
At5g65270
At5g47520

GO:0005934 cellular bud tip C
IDA
Sce S000005248

GO:0005935 cellular bud neck C
IDA
Sce S000005248

GO:0009504 cell plate C
IDA
Ath At1g09630
At1g01200
At3g46830
At1g07410
At5g59150

GO:0016020 membrane C
IDA
Ath At5g65270

GO:0030140 trans-Golgi network transport vesicle C
IDA
Dme FBgn0015790

GO:0031982 vesicle C
IDA
Dme FBgn0015790

GO:0032154 cleavage furrow C
IDA
Dme FBgn0015790
Hsa RAB11A

GO:0043195 terminal button C
IDA
Dme FBgn0015790

GO:0045169 fusome C
IDA
Dme FBgn0015790

GO:0045177 apical part of cell C
IDA
Ath At3g12160

GO:0048471 perinuclear region of cytoplasm C
IDA
Dme FBgn0015790

GO:0060187 cell pole C
IDA
Dme FBgn0015790

GO:0070382 exocytic vesicle C
IDA
Ath At3g12160

GO:0070732 spindle envelope C
IDA
Dme FBgn0015790

GO:0003924 GTPase activity F
IDA
Hsa RAB11A
Sce S000003178
S000000833
IPI
Sce S000003178
S000005248
S000000833
ISS
Dme FBgn0015790
Sce S000003178
S000000833
Spo SPAC18G6.03
NAS
Dme FBgn0015790
TAS
Cel WBGene00004274
Hsa RABL2A

GO:0005515 protein binding F
IPI
Hsa RAB11A

GO:0005525 GTP binding F
IDA
Ath At1g16920
ISS
Ath At2g31680
At1g07410
At1g06400
At1g05810
At1g18200
At1g73640
At3g12160
At3g07410
At2g33870
At1g16920
At1g09630
At3g15060
At1g01200
At1g28550
At3g46830
At4g18800
At2g43130
At5g59150
At4g08190
At4g18430
At4g39990
At5g65270
At5g45750
At5g47520
At5g47960
At5g60860
Spo SPAC18G6.03
NAS
Dme FBgn0015790
TAS
Cel WBGene00004274

GO:0019905 syntaxin binding F
NAS
Hsa RAB11A

GO:0000001 mitochondrion inheritance P
IGI
Sce S000005248
IMP
Sce S000005248

GO:0000003 reproduction P
IMP
Cel WBGene00004274

GO:0000910 cytokinesis P
IMP
Ath At1g09630
Cel WBGene00004274
Hsa RAB11A

GO:0000916 contractile ring contraction involved in cell
cycle cytokinesis P
IMP
Dme FBgn0015790

GO:0001745 compound eye morphogenesis P
IMP
Dme FBgn0015790

GO:0002119 nematode larval development P
IMP
Cel WBGene00004274

GO:0006184 GTP catabolic process P
ISS
Spo SPAC18G6.03

GO:0006886 intracellular protein transport P
TAS
Ath At1g16920
Spo SPAC18G6.03

GO:0006887 exocytosis P
IMP
Sce S000000833
S000003178
Spo SPAC18G6.03

GO:0006897 endocytosis P
IDA
Dme FBgn0015790
IMP
Dme FBgn0015790

GO:0006898 receptor-mediated endocytosis P
IMP
Cel WBGene00004274

GO:0007047 cellular cell wall organization P
IMP
Spo SPAC18G6.03

GO:0007112 male meiosis cytokinesis P
IMP
Dme FBgn0015790

GO:0007264 small GTPase mediated signal transduction P
IC
Spo SPAC18G6.03
ISS
Ath At4g08190

GO:0007317 regulation of pole plasm oskar mRNA
localization P
IMP
Dme FBgn0015790

GO:0007349 cellularization P
IMP
Dme FBgn0015790

GO:0007391 dorsal closure P
IMP
Dme FBgn0015790

GO:0008103 oocyte microtubule cytoskeleton
polarization P
IMP
Dme FBgn0015790

GO:0009408 response to heat P
IEP
Ath At2g43130

GO:0009792 embryo development ending in birth or egg
hatching P
IMP
Cel WBGene00004274

GO:0009860 pollen tube growth P
IDA
Ath At3g12160

GO:0016192 vesicle-mediated transport P
IGI
Sce S000000833
S000003178
IMP
Sce S000003178
S000000833

GO:0016360 sensory organ precursor cell fate
determination P
IMP
Dme FBgn0015790

GO:0019730 antimicrobial humoral response P
IMP
Dme FBgn0015790

GO:0022416 bristle development P
IMP
Dme FBgn0015790

GO:0031532 actin cytoskeleton reorganization P
IMP
Dme FBgn0015790

GO:0032456 endocytic recycling P
IDA
Ath At4g39990

GO:0033205 cell cycle cytokinesis P
IMP
Spo SPAC18G6.03

GO:0040007 growth P
IMP
Cel WBGene00004274

GO:0042052 rhabdomere development P
IMP
Dme FBgn0015790

GO:0042078 germ-line stem cell division P
IMP
Dme FBgn0015790

GO:0042144 vacuole fusion, non-autophagic P
IMP
Spo SPAC18G6.03

GO:0045478 fusome organization P
IMP
Dme FBgn0015790

GO:0046686 response to cadmium ion P
IEP
Ath At3g15060

GO:0048137 spermatocyte division P
IMP
Dme FBgn0015790

GO:0048210 Golgi vesicle fusion to target
membrane P
IMP
Dme FBgn0015790

GO:0048219 inter-Golgi cisterna vesicle-mediated
transport P
TAS
Ath At2g43130

GO:0048227 plasma membrane to endosome transport P
NAS
Hsa RAB11A

GO:0048309 endoplasmic reticulum inheritance P
IMP
Sce S000005248

GO:0048313 Golgi inheritance P
IGI
Sce S000005248
IMP
Sce S000005248

GO:0048477 oogenesis P
IMP
Dme FBgn0015790

GO:0048749 compound eye development P
IGI
Dme FBgn0015790

GO:0048868 pollen tube development P
IGI
Ath At3g12160

GO:0050807 regulation of synapse organization P
IMP
Dme FBgn0015790

GO:0051301 cell division P
IMP
Cel WBGene00004274

GO:0051645 Golgi localization P
IGI
Sce S000005248
IMP
Sce S000005248

GO:0080092 regulation of pollen tube growth P
IMP
Ath At3g12160

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern

40039

Species Gene ID NCBI link UniProt link

Saccharomyces cerevisiae (Sce) YPT11
(S000005248) GI:82795261

Kluyveromyces lactis (Kla) KLLA0C12881g GI:50305627

Eremothecium gossypii (Ego) AGOS_ADL162W GI:45187711

GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations

GO:0000131 incipient cellular bud site C
IDA
Sce S000005248

GO:0005783 endoplasmic reticulum C
IDA
Sce S000005248

GO:0005934 cellular bud tip C
IDA
Sce S000005248

GO:0005935 cellular bud neck C
IDA
Sce S000005248

GO:0003924 GTPase activity F
IPI
Sce S000005248

GO:0000001 mitochondrion inheritance P
IGI
Sce S000005248
IMP
Sce S000005248

GO:0048309 endoplasmic reticulum inheritance P
IMP
Sce S000005248

GO:0048313 Golgi inheritance P
IGI
Sce S000005248
IMP
Sce S000005248

GO:0051645 Golgi localization P
IGI
Sce S000005248
IMP
Sce S000005248

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern

OG1_31685

Species OrthoMCL
sequence Model organism
protein page UniProt link

Ashbya gossypii (Ago) ago1579 ADL162W

Candida glabrata (Cgl) cgl4822 CAGL0M03817g

Kluyveromyces lactis (Kla) kla1773 KLLA0C12881g

Saccharomyces cerevisiae (Sce) sce5428 YNL304W
(S000005248)

GO terms for OrthoMCL results:

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YOGY Home

YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards: Yes No

Search for GO info: Yes No

GO info in one table: Yes No

s.khadayate@ucl.ac.uk

KOG name	Phylogenetic pattern (and link to KOGs with this pattern)
KOG0087	ACDHYPE

KOGs classification	KOGs description
CELLULAR PROCESSES AND SIGNALING	GTPase Rab11/YPT3, small G protein superfamily

Species	KOG link	NCBI link	UniProt link
Arabidopsis thaliana (Ath)	At1g01200	GI:15223343
Arabidopsis thaliana (Ath)	At1g05810	GI:18390575
Arabidopsis thaliana (Ath)	At1g06400	GI:15221477
Arabidopsis thaliana (Ath)	At1g07410	GI:15222396
Arabidopsis thaliana (Ath)	At1g09630	GI:15217568
Arabidopsis thaliana (Ath)	At1g16920	GI:15219955
Arabidopsis thaliana (Ath)	At1g18200	GI:15221005
Arabidopsis thaliana (Ath)	At1g28550	GI:15218719
Arabidopsis thaliana (Ath)	At1g47590_1	GI:15220261
Arabidopsis thaliana (Ath)	At1g73640	GI:15219515
Arabidopsis thaliana (Ath)	At2g22390	GI:15227197
Arabidopsis thaliana (Ath)	At2g31680	GI:15225121
Arabidopsis thaliana (Ath)	At2g33870	GI:15226182
Arabidopsis thaliana (Ath)	At2g43130	GI:15224226
Arabidopsis thaliana (Ath)	At3g07410	GI:15231462
Arabidopsis thaliana (Ath)	At3g12160	GI:15230422
Arabidopsis thaliana (Ath)	At3g15060	GI:15232477
Arabidopsis thaliana (Ath)	At3g46830	GI:15232652
Arabidopsis thaliana (Ath)	At4g08190	GI:15236426
Arabidopsis thaliana (Ath)	At4g18430	GI:15233873
Arabidopsis thaliana (Ath)	At4g18800	GI:15234020
Arabidopsis thaliana (Ath)	At4g39990	GI:15236099
Arabidopsis thaliana (Ath)	At5g45750	GI:15242483
Arabidopsis thaliana (Ath)	At5g47520	GI:15238115
Arabidopsis thaliana (Ath)	At5g47960	GI:15238852
Arabidopsis thaliana (Ath)	At5g59150	GI:15237828
Arabidopsis thaliana (Ath)	At5g60860	GI:15239462
Arabidopsis thaliana (Ath)	At5g65270	GI:15238392
Caenorhabditis elegans (Cel)	CE11006 (WBGene00004274)	GI:17507543	O01803
Caenorhabditis elegans (Cel)	CE14584	GI:17509579
Drosophila melanogaster (Dme)	7300703 (FBgn0015790)	GI:17137216
Homo sapiens (Hsa)	Hs4758984 (RAB11A)	GI:4758984	P62491
Homo sapiens (Hsa)	Hs4758986	GI:4758986
Homo sapiens (Hsa)	Hs5902040	GI:5902040	Q9UNT1
Homo sapiens (Hsa)	Hs9966861	GI:9966861
Homo sapiens (Hsa)	Hs15299119	GI:15299119
Homo sapiens (Hsa)	Hs17483399	GI:14249144
Homo sapiens (Hsa)	Hs17489480	GI:17489480
Homo sapiens (Hsa)	Hs5902038 (RABL2A)	GI:5902038	Q9UBK7
Saccharomyces cerevisiae (Sce)	YER031c (S000000833)	GI:6320869	P38555
Saccharomyces cerevisiae (Sce)	YGL210w (S000003178)	GI:6321228	P51996
Saccharomyces cerevisiae (Sce)	YNL304w (S000005248)	GI:6324025
Schizosaccharomyces pombe (Spo)	SPAC18G6.03	GI:19114579	P17610
Encephalitozoon cuniculi (Ecu)	ECU04g0680	GI:19074145	Q8SS52
Arabidopsis thaliana (Ath)	At1g01200	GI:15223343
Arabidopsis thaliana (Ath)	At1g05810	GI:18390575
Arabidopsis thaliana (Ath)	At1g06400	GI:15221477
Arabidopsis thaliana (Ath)	At1g07410	GI:15222396
Arabidopsis thaliana (Ath)	At1g09630	GI:15217568
Arabidopsis thaliana (Ath)	At1g16920	GI:15219955
Arabidopsis thaliana (Ath)	At1g18200	GI:15221005
Arabidopsis thaliana (Ath)	At1g28550	GI:15218719
Arabidopsis thaliana (Ath)	At1g47590_1	GI:15220261
Arabidopsis thaliana (Ath)	At1g73640	GI:15219515
Arabidopsis thaliana (Ath)	At2g22390	GI:15227197
Arabidopsis thaliana (Ath)	At2g31680	GI:15225121
Arabidopsis thaliana (Ath)	At2g33870	GI:15226182
Arabidopsis thaliana (Ath)	At2g43130	GI:15224226
Arabidopsis thaliana (Ath)	At3g07410	GI:15231462
Arabidopsis thaliana (Ath)	At3g12160	GI:15230422
Arabidopsis thaliana (Ath)	At3g15060	GI:15232477
Arabidopsis thaliana (Ath)	At3g46830	GI:15232652
Arabidopsis thaliana (Ath)	At4g08190	GI:15236426
Arabidopsis thaliana (Ath)	At4g18430	GI:15233873
Arabidopsis thaliana (Ath)	At4g18800	GI:15234020
Arabidopsis thaliana (Ath)	At4g39990	GI:15236099
Arabidopsis thaliana (Ath)	At5g45750	GI:15242483
Arabidopsis thaliana (Ath)	At5g47520	GI:15238115
Arabidopsis thaliana (Ath)	At5g47960	GI:15238852
Arabidopsis thaliana (Ath)	At5g59150	GI:15237828
Arabidopsis thaliana (Ath)	At5g60860	GI:15239462
Arabidopsis thaliana (Ath)	At5g65270	GI:15238392
Caenorhabditis elegans (Cel)	CE11006 (WBGene00004274)	GI:17507543	O01803
Caenorhabditis elegans (Cel)	CE14584	GI:17509579
Drosophila melanogaster (Dme)	7300703 (FBgn0015790)	GI:17137216
Homo sapiens (Hsa)	Hs4758984 (RAB11A)	GI:4758984	P62491
Homo sapiens (Hsa)	Hs4758986	GI:4758986
Homo sapiens (Hsa)	Hs5902040	GI:5902040	Q9UNT1
Homo sapiens (Hsa)	Hs9966861	GI:9966861
Homo sapiens (Hsa)	Hs15299119	GI:15299119
Homo sapiens (Hsa)	Hs17483399	GI:14249144
Homo sapiens (Hsa)	Hs17489480	GI:17489480
Homo sapiens (Hsa)	Hs5902038 (RABL2A)	GI:5902038	Q9UBK7
Saccharomyces cerevisiae (Sce)	YER031c (S000000833)	GI:6320869	P38555
Saccharomyces cerevisiae (Sce)	YGL210w (S000003178)	GI:6321228	P51996
Saccharomyces cerevisiae (Sce)	YNL304w (S000005248)	GI:6324025
Schizosaccharomyces pombe (Spo)	SPAC18G6.03	GI:19114579	P17610
Encephalitozoon cuniculi (Ecu)	ECU04g0680	GI:19074145	Q8SS52
Arabidopsis thaliana (Ath)	At1g01200	GI:15223343
Arabidopsis thaliana (Ath)	At1g05810	GI:18390575
Arabidopsis thaliana (Ath)	At1g06400	GI:15221477
Arabidopsis thaliana (Ath)	At1g07410	GI:15222396
Arabidopsis thaliana (Ath)	At1g09630	GI:15217568
Arabidopsis thaliana (Ath)	At1g16920	GI:15219955
Arabidopsis thaliana (Ath)	At1g18200	GI:15221005
Arabidopsis thaliana (Ath)	At1g28550	GI:15218719
Arabidopsis thaliana (Ath)	At1g47590_1	GI:15220261
Arabidopsis thaliana (Ath)	At1g73640	GI:15219515
Arabidopsis thaliana (Ath)	At2g22390	GI:15227197
Arabidopsis thaliana (Ath)	At2g31680	GI:15225121
Arabidopsis thaliana (Ath)	At2g33870	GI:15226182
Arabidopsis thaliana (Ath)	At2g43130	GI:15224226
Arabidopsis thaliana (Ath)	At3g07410	GI:15231462
Arabidopsis thaliana (Ath)	At3g12160	GI:15230422
Arabidopsis thaliana (Ath)	At3g15060	GI:15232477
Arabidopsis thaliana (Ath)	At3g46830	GI:15232652
Arabidopsis thaliana (Ath)	At4g08190	GI:15236426
Arabidopsis thaliana (Ath)	At4g18430	GI:15233873
Arabidopsis thaliana (Ath)	At4g18800	GI:15234020
Arabidopsis thaliana (Ath)	At4g39990	GI:15236099
Arabidopsis thaliana (Ath)	At5g45750	GI:15242483
Arabidopsis thaliana (Ath)	At5g47520	GI:15238115
Arabidopsis thaliana (Ath)	At5g47960	GI:15238852
Arabidopsis thaliana (Ath)	At5g59150	GI:15237828
Arabidopsis thaliana (Ath)	At5g60860	GI:15239462
Arabidopsis thaliana (Ath)	At5g65270	GI:15238392
Caenorhabditis elegans (Cel)	CE11006 (WBGene00004274)	GI:17507543	O01803
Caenorhabditis elegans (Cel)	CE14584	GI:17509579
Drosophila melanogaster (Dme)	7300703 (FBgn0015790)	GI:17137216
Homo sapiens (Hsa)	Hs4758984 (RAB11A)	GI:4758984	P62491
Homo sapiens (Hsa)	Hs4758986	GI:4758986
Homo sapiens (Hsa)	Hs5902040	GI:5902040	Q9UNT1
Homo sapiens (Hsa)	Hs9966861	GI:9966861
Homo sapiens (Hsa)	Hs15299119	GI:15299119
Homo sapiens (Hsa)	Hs17483399	GI:14249144
Homo sapiens (Hsa)	Hs17489480	GI:17489480
Homo sapiens (Hsa)	Hs5902038 (RABL2A)	GI:5902038	Q9UBK7
Saccharomyces cerevisiae (Sce)	YER031c (S000000833)	GI:6320869	P38555
Saccharomyces cerevisiae (Sce)	YGL210w (S000003178)	GI:6321228	P51996
Saccharomyces cerevisiae (Sce)	YNL304w (S000005248)	GI:6324025
Schizosaccharomyces pombe (Spo)	SPAC18G6.03	GI:19114579	P17610
Encephalitozoon cuniculi (Ecu)	ECU04g0680	GI:19074145	Q8SS52

Species	Gene ID	NCBI link	UniProt link
Saccharomyces cerevisiae (Sce)	YPT11 (S000005248)	GI:82795261
Kluyveromyces lactis (Kla)	KLLA0C12881g	GI:50305627
Eremothecium gossypii (Ego)	AGOS_ADL162W	GI:45187711

Species	OrthoMCL sequence	Model organism protein page	UniProt link
Ashbya gossypii (Ago)	ago1579	ADL162W
Candida glabrata (Cgl)	cgl4822	CAGL0M03817g
Kluyveromyces lactis (Kla)	kla1773	KLLA0C12881g
Saccharomyces cerevisiae (Sce)	sce5428	YNL304W (S000005248)