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Search term: YNR001C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CIT1
SGD link S000005284
Alternative ID YNR001C
Description Citrate synthase, catalyzes the condensation of acetyl coenzyme A and oxaloacetate to form citrate; the rate-limiting enzyme of the TCA cycle; nuclear encoded mitochondrial protein
Synonyms YNR001C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2617 ACDHYP-

KOGs classification KOGs description
METABOLISM Citrate synthase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g11270 GI:15227425
Arabidopsis thaliana (Ath) At2g42790 GI:15228003
Arabidopsis thaliana (Ath) At2g44350 GI:7436692
Arabidopsis thaliana (Ath) At3g58740 GI:15231128
Arabidopsis thaliana (Ath) At3g58750 GI:15231130
Arabidopsis thaliana (Ath) At3g60100 GI:15232248
Caenorhabditis elegans (Cel) CE00513
(WBGene00000833)
GI:17555174 P34575
Drosophila melanogaster (Dme) 7290712 GI:7290712
Drosophila melanogaster (Dme) 7299562 GI:7299562
Homo sapiens (Hsa) Hs4758076 GI:4758076
Homo sapiens (Hsa) Hs17434182 GI:17434182
Homo sapiens (Hsa) Hs18562547 GI:18562547
Saccharomyces cerevisiae (Sce) YCR005c
(S000000598)
GI:6319850 P08679
Saccharomyces cerevisiae (Sce) YNR001c
(S000005284)
GI:6324328 P00890
Saccharomyces cerevisiae (Sce) YPR001w
(S000006205)
GI:6325257 P43635
Schizosaccharomyces pombe (Spo) SPAC6C3.04 GI:19114630 Q10306


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt2g11270
GO:0005618 cell wall C
IDA
AthAt2g44350
GO:0005739 mitochondrion C
IDA
AthAt2g44350
At3g60100
SceS000000598
S000006205
S000005284
SpoSPAC6C3.04
IPI
SceS000005284
TAS
AthAt2g44350
GO:0005759 mitochondrial matrix C
ISS
SpoSPAC6C3.04
GO:0005777 peroxisome C
IDA
AthAt3g58750
At2g42790
SceS000000598
ISS
AthAt3g58740
GO:0009507 chloroplast C
IDA
AthAt2g44350
GO:0004108 citrate (Si)-synthase activity F
IDA
AthAt2g44350
SceS000005284
S000006205
SpoSPAC6C3.04
IGI
AthAt3g58750
At2g42790
IMP
SceS000005284
S000006205
ISS
AthAt2g42790
At2g44350
At3g58740
At3g60100
At3g58750
TAS
SceS000000598
GO:0005524 ATP binding F
IDA
AthAt2g44350
GO:0008270 zinc ion binding F
IDA
AthAt2g44350
GO:0050440 2-methylcitrate synthase activity F
IDA
SceS000006205
IMP
SceS000006205
GO:0002119 nematode larval development P
IMP
CelWBGene00000833
GO:0006097 glyoxylate cycle P
TAS
SceS000000598
GO:0006099 tricarboxylic acid cycle P
IDA
SpoSPAC6C3.04
ISS
AthAt2g44350
At3g60100
At3g58740
At3g58750
At2g42790
TAS
AthAt2g44350
SceS000005284
S000006205
GO:0006101 citrate metabolic process P
IDA
SpoSPAC6C3.04
TAS
SceS000000598
S000005284
S000006205
GO:0006537 glutamate biosynthetic process P
ISS
SpoSPAC6C3.04
TAS
SceS000000598
S000005284
GO:0006635 fatty acid beta-oxidation P
IGI
AthAt3g58750
At2g42790
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00000833
GO:0019541 propionate metabolic process P
IEP
SceS000006205
GO:0019629 propionate catabolic process, 2-methylcitrate
cycle
P
IGI
SceS000006205
GO:0040007 growth P
IMP
CelWBGene00000833
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00000833
GO:0044275 cellular carbohydrate catabolic
process
P
IC
SpoSPAC6C3.04
GO:0046356 acetyl-CoA catabolic process P
IDA
SceS000005284
IMP
SceS000005284
GO:0046686 response to cadmium ion P
IEP
AthAt2g44350
GO:0051186 cofactor metabolic process P
RCA
SceS000005284
GO:0055114 oxidation reduction P
RCA
SceS000005284

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
7131

Species Gene ID NCBI link UniProt link
Mus musculus (Mmu) Csl
(MGI:1919082)
GI:13386272 Q80X68
Schizosaccharomyces pombe (Spo) cit1
(SPAC6C3.04)
GI:19114630 Q10306
Saccharomyces cerevisiae (Sce) CIT1
(S000005284)
GI:6324328 P00890
Kluyveromyces lactis (Kla) KLLA0F12760g GI:50311261
Eremothecium gossypii (Ego) AGOS_AAR004C GI:45184827
Magnaporthe grisea (Mgr) MGG_07202 GI:39971773
Neurospora crassa (Ncr) NCU01692.1 GI:32415303
Arabidopsis thaliana (Ath) CSY5 GI:145339693


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005739 mitochondrion C
IDA
AthCSY5
MmuMGI:1919082
SceS000005284
SpoSPAC6C3.04
IPI
SceS000005284
GO:0005759 mitochondrial matrix C
ISS
SpoSPAC6C3.04
GO:0003674 molecular_function F
ND
MmuMGI:1919082
GO:0004108 citrate (Si)-synthase activity F
IDA
SceS000005284
SpoSPAC6C3.04
IMP
SceS000005284
ISS
AthCSY5
GO:0006099 tricarboxylic acid cycle P
IDA
SpoSPAC6C3.04
ISS
AthCSY5
TAS
SceS000005284
GO:0006101 citrate metabolic process P
IDA
SpoSPAC6C3.04
TAS
SceS000005284
GO:0006537 glutamate biosynthetic process P
ISS
SpoSPAC6C3.04
TAS
SceS000005284
GO:0008150 biological_process P
ND
MmuMGI:1919082
GO:0044275 cellular carbohydrate catabolic
process
P
IC
SpoSPAC6C3.04
GO:0046356 acetyl-CoA catabolic process P
IDA
SceS000005284
IMP
SceS000005284
GO:0051186 cofactor metabolic process P
RCA
SceS000005284
GO:0055114 oxidation reduction P
RCA
SceS000005284

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_536

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga9229 ENSANGP00000015768
Ashbya gossypii (Ago) ago190 AAR004C
Arabidopsis thaliana (Ath) ath11459 At2g42790.1
Arabidopsis thaliana (Ath) ath11646 At2g44350.1
Arabidopsis thaliana (Ath) ath11647 At2g44350.2
Arabidopsis thaliana (Ath) ath17284 At3g58750.1
Caenorhabditis elegans (Cel) cel15842 T20G5.2
(CE00513;
WBGene00000833)
Candida glabrata (Cgl) cgl365 CAGL0B03663g
Candida glabrata (Cgl) cgl2235 CAGL0H03993g
Cryptococcus neoformans (Cne) cne1867 181.m07833
Dictyostelium discoideum (Ddi) ddi11419 DDB0191110
Dictyostelium discoideum (Ddi) ddi11732 DDB0214944
Dictyostelium discoideum (Ddi) ddi12943 DDB0220637
Dictyostelium discoideum (Ddi) ddi11943 DDB0220638
Debaryomyces hansenii (Dha) dha5350 DEHA0F21692g
Drosophila melanogaster (Dme) dme12191 CG14740-PA
(FBgn0037988)
Drosophila melanogaster (Dme) dme16719 CG3861-PA
(FBgn0026708)
Drosophila melanogaster (Dme) dme16718 CG3861-PB
(FBgn0026708)
Danio rerio (Dre) dre15816 ENSDARP00000031758
Escherichia coli (Eco) eco324 16128318
Escherichia coli (Eco) eco698 16128695
Takifugu rubripes (Fru) fru9548 SINFRUP00000127671
Homo sapiens (Hsa) hsa7687 ENSP00000262034
Homo sapiens (Hsa) hsa7686 ENSP00000342056
(CS)
O75390
Kluyveromyces lactis (Kla) kla4655 KLLA0F12760g
Mus musculus (Mmu) mmu3019 ENSMUSP00000005826
(MGI:88529)
Q9CZU6
Mus musculus (Mmu) mmu2784 ENSMUSP00000052373
(MGI:1919082)
Q80X68
Neurospora crassa (Ncr) ncr1645 NCU01692.2
Oryza sativa (Osa) osa6598 2482.m00173
Oryza sativa (Osa) osa13506 2942.m00114
Plasmodium falciparum (Pfa) pfa436 PF10_0218
Rattus norvegicus (Rno) rno26003 ENSRNOP00000034921
(RGD:620330)
Q8VHF5
Saccharomyces cerevisiae (Sce) sce658 YCR005C
(S000000598)
Saccharomyces cerevisiae (Sce) sce5466 YNR001C
(S000005284)
Schizosaccharomyces pombe (Spo) spo3948 SPAC6C3.04 Q10306
Yarrowia lipolytica (Yli) yli3971 YALI0E02684g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005618 cell wall C
IDA
AthAt2g44350
GO:0005739 mitochondrion C
IDA
AthAt2g44350
MmuMGI:1919082
MGI:88529
SceS000000598
S000005284
SpoSPAC6C3.04
IPI
SceS000005284
ISA
MmuMGI:88529
ISO
MmuMGI:88529
TAS
AthAt2g44350
GO:0005759 mitochondrial matrix C
ISS
DmeFBgn0037988
PfaPF10_0218
SpoSPAC6C3.04
GO:0005777 peroxisome C
IDA
AthAt3g58750
At2g42790
SceS000000598
GO:0009507 chloroplast C
IDA
AthAt2g44350
GO:0003674 molecular_function F
ND
MmuMGI:1919082
GO:0004108 citrate (Si)-synthase activity F
IDA
AthAt2g44350
SceS000005284
SpoSPAC6C3.04
IGI
AthAt3g58750
At2g42790
IMP
SceS000005284
ISA
MmuMGI:88529
ISO
MmuMGI:88529
ISS
AthAt2g42790
At2g44350
At3g58750
DmeFBgn0037988
PfaPF10_0218
TAS
SceS000000598
GO:0005524 ATP binding F
IDA
AthAt2g44350
GO:0008270 zinc ion binding F
IDA
AthAt2g44350
GO:0046912 transferase activity, transferring acyl groups,
acyl groups converted into alkyl on
transfer
F
IDA
MmuMGI:88529
GO:0002119 nematode larval development P
IMP
CelWBGene00000833
GO:0006084 acetyl-CoA metabolic process P
ISO
MmuMGI:88529
GO:0006097 glyoxylate cycle P
TAS
SceS000000598
GO:0006099 tricarboxylic acid cycle P
IDA
SpoSPAC6C3.04
ISO
MmuMGI:88529
ISS
AthAt2g44350
At3g58750
At2g42790
DmeFBgn0037988
PfaPF10_0218
TAS
AthAt2g44350
SceS000005284
GO:0006101 citrate metabolic process P
IDA
SpoSPAC6C3.04
ISO
MmuMGI:88529
ISS
DmeFBgn0037988
PfaPF10_0218
TAS
SceS000000598
S000005284
GO:0006107 oxaloacetate metabolic process P
ISO
MmuMGI:88529
GO:0006537 glutamate biosynthetic process P
ISS
SpoSPAC6C3.04
TAS
SceS000000598
S000005284
GO:0006635 fatty acid beta-oxidation P
IGI
AthAt3g58750
At2g42790
GO:0008150 biological_process P
ND
MmuMGI:1919082
GO:0008152 metabolic process P
IDA
MmuMGI:88529
ISA
MmuMGI:88529
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00000833
GO:0040007 growth P
IMP
CelWBGene00000833
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00000833
GO:0044275 cellular carbohydrate catabolic
process
P
IC
SpoSPAC6C3.04
GO:0046356 acetyl-CoA catabolic process P
IDA
SceS000005284
IMP
SceS000005284
GO:0046686 response to cadmium ion P
IEP
AthAt2g44350
GO:0051186 cofactor metabolic process P
RCA
SceS000005284
GO:0055114 oxidation reduction P
RCA
SceS000005284

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC6C3.04
(Q10306)
YNR001C
(S000005284)