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Search term: YNR007C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ATG3
SGD link S000005290
Alternative ID YNR007C
Description E2-like enzyme involved in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; plays a role in formation of Atg8p-phosphatidylethanolamine conjugates, which are involved in membrane dynamics during autophagy and Cvt
Synonyms YNR007C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2981 ACDHYP-

KOGs classification KOGs description
POORLY CHARACTERIZED Protein involved in autophagocytosis during starvation

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g61500 GI:15240273
Caenorhabditis elegans (Cel) CE25486
(WBGene00021922)		 GI:17543646 Q9N369
Drosophila melanogaster (Dme) 7293868 GI:7293868
Homo sapiens (Hsa) Hs19526773
(ATG3)		 GI:19526773 Q9NT62
Saccharomyces cerevisiae (Sce) YNR007c
(S000005290)		 GI:6324334 P40344
Schizosaccharomyces pombe (Spo) SPBC3B9.06c GI:19113456 O43035


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000153 cytoplasmic ubiquitin ligase complex C
IPI
HsaATG3
GO:0005575 cellular_component C
ND
AthAt5g61500
GO:0005634 nucleus C
IDA
SpoSPBC3B9.06c
GO:0005737 cytoplasm C
IDA
SceS000005290
GO:0005829 cytosol C
IDA
HsaATG3
SceS000005290
SpoSPBC3B9.06c
GO:0003674 molecular_function F
ND
AthAt5g61500
GO:0005515 protein binding F
IPI
HsaATG3
GO:0019776 Atg8 ligase activity F
IMP
SceS000005290
IPI
SceS000005290
ISS
HsaATG3
SceS000005290
SpoSPBC3B9.06c
GO:0019777 Atg12 ligase activity F
ISS
HsaATG3
GO:0019787 small conjugating protein ligase
activity		 F
IDA
HsaATG3
GO:0019899 enzyme binding F
IPI
HsaATG3
GO:0000045 autophagic vacuole assembly P
IMP
SceS000005290
ISS
HsaATG3
SpoSPBC3B9.06c
GO:0000422 mitochondrion degradation P
IMP
SceS000005290
GO:0006464 protein modification process P
IDA
HsaATG3
GO:0006501 C-terminal protein lipidation P
IDA
SceS000005290
IMP
SceS000005290
ISS
SpoSPBC3B9.06c
GO:0006612 protein targeting to membrane P
ISS
HsaATG3
SpoSPBC3B9.06c
GO:0006914 autophagy P
IMP
SpoSPBC3B9.06c
ISS
AthAt5g61500
RCA
SceS000005290
GO:0006995 cellular response to nitrogen starvation P
IMP
SpoSPBC3B9.06c
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00021922
GO:0016236 macroautophagy P
IC
SpoSPBC3B9.06c
GO:0016567 protein ubiquitination P
IDA
HsaATG3
GO:0032258 CVT pathway P
IMP
SceS000005290
ISS
SpoSPBC3B9.06c
GO:0034727 piecemeal microautophagy of nucleus P
IMP
SceS000005290
GO:0043653 mitochondrial fragmentation involved in
apoptosis		 P
ISS
HsaATG3

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68900

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) ATG3
(S000005290)		 GI:6324334 P40344
Kluyveromyces lactis (Kla) KLLA0F06402g GI:50310697
Eremothecium gossypii (Ego) AGOS_AFL178W GI:45198343
Magnaporthe grisea (Mgr) MGG_02959 GI:39970985
Neurospora crassa (Ncr) NCU01955.1 GI:32417334


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SceS000005290
GO:0005829 cytosol C
IDA
SceS000005290
GO:0019776 Atg8 ligase activity F
IMP
SceS000005290
IPI
SceS000005290
ISS
SceS000005290
GO:0000045 autophagic vacuole assembly P
IMP
SceS000005290
GO:0000422 mitochondrion degradation P
IMP
SceS000005290
GO:0006501 C-terminal protein lipidation P
IDA
SceS000005290
IMP
SceS000005290
GO:0006914 autophagy P
RCA
SceS000005290
GO:0032258 CVT pathway P
IMP
SceS000005290
GO:0034727 piecemeal microautophagy of nucleus P
IMP
SceS000005290

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2006

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga8701 ENSANGP00000015092
Ashbya gossypii (Ago) ago3017 AFL178W
Arabidopsis thaliana (Ath) ath28245 At5g61500.1
Caenorhabditis elegans (Cel) cel19900 Y55F3AM.4
(CE25486;
WBGene00021922)
Candida glabrata (Cgl) cgl2773 CAGL0I05808g
Cryptococcus neoformans (Cne) cne3459 176.m02173
Dictyostelium discoideum (Ddi) ddi6940 DDB0217934
Debaryomyces hansenii (Dha) dha2778 DEHA0D10846g
Drosophila melanogaster (Dme) dme10119 CG6877-PA
(FBgn0036813)
Danio rerio (Dre) dre29735 ENSDARP00000027257
Gallus gallus (Gga) gga1773 ENSGALP00000024484
(ATG3)
Gallus gallus (Gga) gga1774 ENSGALP00000024485
Gallus gallus (Gga) gga1775 ENSGALP00000024486
Gallus gallus (Gga) gga1776 ENSGALP00000024487
Gallus gallus (Gga) gga1777 ENSGALP00000024488
Homo sapiens (Hsa) hsa22919 ENSP00000283290
(ATG3)		 Q9NT62-1
Kluyveromyces lactis (Kla) kla4370 KLLA0F06402g
Mus musculus (Mmu) mmu10383 ENSMUSP00000023343
(MGI:1915091)		 Q9CPX6
Neurospora crassa (Ncr) ncr1902 NCU01955.2
Oryza sativa (Osa) osa20825 3570.m00130
Oryza sativa (Osa) osa35854 4749.m00129
Plasmodium falciparum (Pfa) pfa4523 PFI0280c
Rattus norvegicus (Rno) rno7110 ENSRNOP00000002906
(RGD:708464)		 Q6AZ50
Saccharomyces cerevisiae (Sce) sce5474 YNR007C
(S000005290)
Schizosaccharomyces pombe (Spo) spo2864 SPBC3B9.06c O43035
Yarrowia lipolytica (Yli) yli4875 YALI0E24453g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000153 cytoplasmic ubiquitin ligase complex C
ISO
MmuMGI:1915091
GO:0005575 cellular_component C
ND
AthAt5g61500
GO:0005634 nucleus C
IDA
SpoSPBC3B9.06c
GO:0005737 cytoplasm C
IDA
SceS000005290
GO:0005829 cytosol C
IDA
SceS000005290
SpoSPBC3B9.06c
ISO
MmuMGI:1915091
GO:0003674 molecular_function F
ND
AthAt5g61500
GO:0019776 Atg8 ligase activity F
IMP
SceS000005290
IPI
SceS000005290
ISS
SceS000005290
SpoSPBC3B9.06c
GO:0019787 small conjugating protein ligase
activity		 F
ISO
MmuMGI:1915091
GO:0000045 autophagic vacuole assembly P
IMP
SceS000005290
ISS
SpoSPBC3B9.06c
GO:0000422 mitochondrion degradation P
IMP
SceS000005290
GO:0006464 protein modification process P
ISO
MmuMGI:1915091
GO:0006501 C-terminal protein lipidation P
IDA
SceS000005290
IMP
SceS000005290
ISS
SpoSPBC3B9.06c
GO:0006612 protein targeting to membrane P
ISS
SpoSPBC3B9.06c
GO:0006914 autophagy P
IMP
DmeFBgn0036813
SpoSPBC3B9.06c
ISS
AthAt5g61500
RCA
SceS000005290
GO:0006995 cellular response to nitrogen starvation P
IMP
SpoSPBC3B9.06c
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00021922
GO:0016236 macroautophagy P
IC
SpoSPBC3B9.06c
GO:0032258 CVT pathway P
IMP
SceS000005290
ISS
SpoSPBC3B9.06c
GO:0034727 piecemeal microautophagy of nucleus P
IMP
SceS000005290

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC3B9.06c
(O43035)		 YNR007C
(S000005290)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC3B9.06c
GO:0005737 cytoplasm C
IDA
SceS000005290
GO:0005829 cytosol C
IDA
SceS000005290
SpoSPBC3B9.06c
GO:0019776 Atg8 ligase activity F
IMP
SceS000005290
IPI
SceS000005290
ISS
SceS000005290
SpoSPBC3B9.06c
GO:0000045 autophagic vacuole assembly P
IMP
SceS000005290
ISS
SpoSPBC3B9.06c
GO:0000422 mitochondrion degradation P
IMP
SceS000005290
GO:0006501 C-terminal protein lipidation P
IDA
SceS000005290
IMP
SceS000005290
ISS
SpoSPBC3B9.06c
GO:0006612 protein targeting to membrane P
ISS
SpoSPBC3B9.06c
GO:0006914 autophagy P
IMP
SpoSPBC3B9.06c
RCA
SceS000005290
GO:0006995 cellular response to nitrogen starvation P
IMP
SpoSPBC3B9.06c
GO:0016236 macroautophagy P
IC
SpoSPBC3B9.06c
GO:0032258 CVT pathway P
IMP
SceS000005290
ISS
SpoSPBC3B9.06c
GO:0034727 piecemeal microautophagy of nucleus P
IMP
SceS000005290

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GO info in one table:

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